BQ623464

Overview
NameBQ623464
Unique NameBQ623464
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length558
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACT_CHOCR (Actin OS=Chondrus crispus GN=AC PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.813e-25
Identity = 52/64 (81.25%), Postives = 58/64 (90.62%), Query Frame = 3
Query:    6 RMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 197
            R+ KEI  LAP SMKIKV+APPER+YSVWIGGSIL+SLSTFQQMW+SK EYDE GPS+VHRKCF
Sbjct:  310 RVQKEIETLAPPSMKIKVIAPPERQYSVWIGGSILSSLSTFQQMWVSKTEYDEMGPSVVHRKCF 373          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACTM_BRALA (Actin, muscle OS=Branchiostoma lanceolatum PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.980e-25
Identity = 51/65 (78.46%), Postives = 58/65 (89.23%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 197
            DRM KE+ +LAPS+MKIK++APPERKYS WIGGSILASLSTF  MWI K EYDE+GP+IVHRKCF
Sbjct:  316 DRMQKEMVSLAPSTMKIKIIAPPERKYSCWIGGSILASLSTFAAMWIKKSEYDEAGPAIVHRKCF 380          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACTM_BRABE (Actin, muscle OS=Branchiostoma belcheri PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.980e-25
Identity = 51/65 (78.46%), Postives = 58/65 (89.23%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 197
            DRM KE+ +LAPS+MKIK++APPERKYS WIGGSILASLSTF  MWI K EYDE+GP+IVHRKCF
Sbjct:  315 DRMQKEMVSLAPSTMKIKIIAPPERKYSCWIGGSILASLSTFAAMWIKKSEYDEAGPAIVHRKCF 379          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACT_ENTHI (Actin OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 8.494e-25
Identity = 52/64 (81.25%), Postives = 58/64 (90.62%), Query Frame = 3
Query:    6 RMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 197
            R+ KE+  LAP +MKIKV+APPERKYSVWIGGSILASLSTFQ MWI+K EYDESGP+IVHRKCF
Sbjct:  313 RLEKEMIQLAPPTMKIKVIAPPERKYSVWIGGSILASLSTFQNMWITKEEYDESGPAIVHRKCF 376          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACT5_ARATH (Putative actin-5 OS=Arabidopsis thaliana GN=ACT5 PE=5 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 8.494e-25
Identity = 53/65 (81.54%), Postives = 58/65 (89.23%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 197
            DRM+KEI ALAP SMKIKVVAPPERKYSVW+GGSILASLS+F  MWI+K EYDE G +IVHRKCF
Sbjct:  314 DRMNKEINALAPPSMKIKVVAPPERKYSVWVGGSILASLSSFAPMWITKAEYDEQGGAIVHRKCF 378          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACT2_ECHGR (Actin-2 OS=Echinococcus granulosus GN=ACTII PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 8.494e-25
Identity = 51/65 (78.46%), Postives = 61/65 (93.85%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 197
            +RM +EI++LAP+++KI++ APPERKYSVWIGGSILASLSTFQQMWISK EY+E GPSIVHRKCF
Sbjct:  312 ERMQREISSLAPTTVKIRIAAPPERKYSVWIGGSILASLSTFQQMWISKVEYEEIGPSIVHRKCF 376          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACT1_NAEFO (Actin-1 OS=Naegleria fowleri PE=2 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 8.494e-25
Identity = 52/65 (80.00%), Postives = 61/65 (93.85%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 197
            +RM+KE+T +AP+SMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EY+++GP IVHRK F
Sbjct:  311 ERMTKELTNMAPASMKIKVVAPPERKYSVWIGGSILASLSTFQQMWITKEEYEDAGPGIVHRKSF 375          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACT_YARLI (Actin OS=Yarrowia lipolytica GN=ACT1 PE=3 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 1.449e-24
Identity = 51/65 (78.46%), Postives = 60/65 (92.31%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 197
            +RM KEI+ALAP+S+K+K+ AP ERKYSVWIGGSILASL TFQQMWISK EYDE+GP+IVHRKC+
Sbjct:  311 ERMHKEISALAPTSIKVKITAPLERKYSVWIGGSILASLGTFQQMWISKQEYDEAGPTIVHRKCY 375          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACT2_SCHCO (Actin-2 OS=Schizophyllum commune GN=ACT2 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.449e-24
Identity = 50/64 (78.12%), Postives = 58/64 (90.62%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 194
            DRM +E++ +AP++MK+K+VAPPERKYSVWIGGSILASLSTFQ MW SK EYDESGP IVHRKC
Sbjct:  311 DRMQRELSNMAPANMKVKIVAPPERKYSVWIGGSILASLSTFQNMWCSKQEYDESGPGIVHRKC 374          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACT_COPC7 (Actin OS=Coprinopsis cinerea (strain Okayama-7 / 130 / FGSC 9003) GN=ACT1 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.892e-24
Identity = 51/65 (78.46%), Postives = 58/65 (89.23%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 197
            DRM KE+ AL+P+SM++K+VAP ERKYSVWIGGSILASLSTFQ +W SK EYDESGP IVHRKCF
Sbjct:  311 DRMQKELLALSPASMRVKIVAPLERKYSVWIGGSILASLSTFQNLWCSKQEYDESGPGIVHRKCF 375          
The following BLAST results are available for this feature:
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 388
Match NameE-valueIdentityDescription
ACT_CHOCR3.813e-2581.25Actin OS=Chondrus crispus GN=AC PE=2 SV=1[more]
ACTM_BRALA4.980e-2578.46Actin, muscle OS=Branchiostoma lanceolatum PE=2 SV... [more]
ACTM_BRABE4.980e-2578.46Actin, muscle OS=Branchiostoma belcheri PE=2 SV=1[more]
ACT_ENTHI8.494e-2581.25Actin OS=Entamoeba histolytica PE=2 SV=1[more]
ACT5_ARATH8.494e-2581.54Putative actin-5 OS=Arabidopsis thaliana GN=ACT5 P... [more]
ACT2_ECHGR8.494e-2578.46Actin-2 OS=Echinococcus granulosus GN=ACTII PE=3 S... [more]
ACT1_NAEFO8.494e-2580.00Actin-1 OS=Naegleria fowleri PE=2 SV=2[more]
ACT_YARLI1.449e-2478.46Actin OS=Yarrowia lipolytica GN=ACT1 PE=3 SV=2[more]
ACT2_SCHCO1.449e-2478.13Actin-2 OS=Schizophyllum commune GN=ACT2 PE=3 SV=1[more]
ACT_COPC71.892e-2478.46Actin OS=Coprinopsis cinerea (strain Okayama-7 / 1... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00555 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00555 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623464 ID=BQ623464; Name=BQ623464; organism=Citrus sinensis; type=EST; length=558bp
CCGACCGTATGAGCAAGGAAATCACAGCACTTGCTCCAAGCAGCATGAAG
ATCAAGGTCGTGGCTCCACCAGAGAGAAAATACAGTGTTTGGATTGGAGG
ATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGATGTGGATCTCAAAGG
GCGAGTATGATGAGTCTGGTCCATCCATTGTCCACAGGAAATGCTTCTAA
GTTCTTTAAGTGCTTGATGGGTGAGTTCTTTTTTTCCATTTAGTTGGTTT
TTTGTGTCTCGTTTCGCGAACTCAAGTTGGTTGACATGGAGAAGTGCTAA
GGTTGGGGCCATTGAAGGAGGCATATCTCGATATTGATGTTATTATACAA
GCTTCTTACAGCGTTTGAGGGGGGCTTATTTCTGTACTCAACCGTCTTCC
TTGCCTTGCATTCATCTGGTGTTCAACCAAGTCTTTTTTCTTTTTTTTCC
TTTTTTTTTTTAAAGTAGGATGTTTGTAGCTGGAGATGAAAAAGTGGTTG
TGATGCCTTTTCTATTTCATTTTTCTAAATTTTCATATTTTGAAGGGTTT
TTTTCTTC
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