BQ623464

Overview
NameBQ623464
Unique NameBQ623464
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length558
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACT2_TRYBB (Actin B OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.892e-24
Identity = 52/65 (80.00%), Postives = 59/65 (90.77%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 197
            +R+ KEI+ LAPSS+K KVVAPPERKYSVWIGGSIL+SL+TFQ MWI+K EYDESGPSIVH KCF
Sbjct:  312 ERLGKEISNLAPSSIKPKVVAPPERKYSVWIGGSILSSLTTFQSMWITKSEYDESGPSIVHSKCF 376          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACT_LEIMA (Actin OS=Leishmania major PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.471e-24
Identity = 51/65 (78.46%), Postives = 59/65 (90.77%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 197
            +R++KEI+ LAPSS+K KVVAPPERKYSVWIGGSIL+SL+TFQ MW+ K EYDESGPSIVH KCF
Sbjct:  312 ERLAKEISNLAPSSIKPKVVAPPERKYSVWIGGSILSSLTTFQTMWVKKSEYDESGPSIVHNKCF 376          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACT2_NAEFO (Actin-2 (Fragment) OS=Naegleria fowleri PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 2.471e-24
Identity = 51/65 (78.46%), Postives = 61/65 (93.85%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 197
            +RM+KE+T +AP+SMKIKVVAPPERKYSVWIGGSILASLSTFQQMWI+K EY+++GP IVHR+ F
Sbjct:  307 ERMTKELTNMAPASMKIKVVAPPERKYSVWIGGSILASLSTFQQMWITKEEYEDAGPGIVHRESF 371          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACT_TRYCR (Actin OS=Trypanosoma cruzi PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.506e-24
Identity = 51/65 (78.46%), Postives = 58/65 (89.23%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 197
            +R+ KEI+ LAPSS+K KVVAPPERKYSVWIGGSIL+SL+TFQ MWI K EYDE+GPSIVH KCF
Sbjct:  312 ERLGKEISNLAPSSIKPKVVAPPERKYSVWIGGSILSSLTTFQTMWIKKSEYDEAGPSIVHNKCF 376          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACT1_TRYBB (Actin A OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.506e-24
Identity = 51/65 (78.46%), Postives = 59/65 (90.77%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 197
            +R++KEI+ L PSS+K KVVAPPERKYSVWIGGSIL+SL+TFQ MWI+K EYDESGPSIVH KCF
Sbjct:  312 ERLAKEISNLPPSSIKPKVVAPPERKYSVWIGGSILSSLTTFQSMWITKSEYDESGPSIVHSKCF 376          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACT_ENCCU (Actin OS=Encephalitozoon cuniculi GN=ECU01_0460 PE=1 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.227e-23
Identity = 52/65 (80.00%), Postives = 56/65 (86.15%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 197
            +R+  EI ALAP  +KI VVAPPERKYSVWIGGSILASLSTFQQMW+SK EY E GPSIVHRKCF
Sbjct:  311 ERILNEIKALAPPVIKIGVVAPPERKYSVWIGGSILASLSTFQQMWVSKAEYQEHGPSIVHRKCF 375          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACT1_NAEGR (Actin-1 OS=Naegleria gruberi GN=ACT1 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.602e-23
Identity = 49/65 (75.38%), Postives = 60/65 (92.31%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 197
            +RM+KE+TA+AP+SMKI+VVAPPERKYSVWIGGSIL+SLSTFQ MWI+  EY+++G  IVHRKCF
Sbjct:  310 ERMTKELTAMAPASMKIRVVAPPERKYSVWIGGSILSSLSTFQSMWITAEEYEDAGCGIVHRKCF 374          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACT4_LYTPI (Actin, cytoskeletal 4 (Fragment) OS=Lytechinus pictus PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.661e-23
Identity = 50/57 (87.72%), Postives = 54/57 (94.74%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGP 173
            DRM KEIT+LAP +MKIK++APPERKYSVWIGGSILASLSTFQQMWISK EYDESGP
Sbjct:   98 DRMQKEITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGP 154          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACT9_ARATH (Putative actin-9 OS=Arabidopsis thaliana GN=ACT9 PE=5 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.499e-21
Identity = 47/64 (73.44%), Postives = 55/64 (85.94%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 194
            +RM+KE+ AL PSSMK+KVV PPE + SVWIGGSILASLSTF QMWI+K EY+E G +IVHRKC
Sbjct:  302 ERMTKELNALVPSSMKVKVVVPPESECSVWIGGSILASLSTFHQMWITKDEYEEHGAAIVHRKC 365          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACTD_PHYPO (Actin, spherule isoform OS=Physarum polycephalum GN=ARDD PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 7.441e-21
Identity = 48/65 (73.85%), Postives = 56/65 (86.15%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 197
            DR+ KE+TA  P+ MKIK++APP R+YS WIGGSILASLSTF+QM ISK EY+E GPSIVHRKCF
Sbjct:  304 DRVQKELTAFEPT-MKIKIIAPPGRQYSAWIGGSILASLSTFEQMCISKKEYNECGPSIVHRKCF 367          
The following BLAST results are available for this feature:
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 388
Match NameE-valueIdentityDescription
ACT2_TRYBB1.892e-2480.00Actin B OS=Trypanosoma brucei brucei PE=3 SV=1[more]
ACT_LEIMA2.471e-2478.46Actin OS=Leishmania major PE=3 SV=1[more]
ACT2_NAEFO2.471e-2478.46Actin-2 (Fragment) OS=Naegleria fowleri PE=2 SV=1[more]
ACT_TRYCR5.506e-2478.46Actin OS=Trypanosoma cruzi PE=3 SV=1[more]
ACT1_TRYBB5.506e-2478.46Actin A OS=Trypanosoma brucei brucei PE=3 SV=1[more]
ACT_ENCCU1.227e-2380.00Actin OS=Encephalitozoon cuniculi GN=ECU01_0460 PE... [more]
ACT1_NAEGR1.602e-2375.38Actin-1 OS=Naegleria gruberi GN=ACT1 PE=3 SV=1[more]
ACT4_LYTPI4.661e-2387.72Actin, cytoskeletal 4 (Fragment) OS=Lytechinus pic... [more]
ACT9_ARATH1.499e-2173.44Putative actin-9 OS=Arabidopsis thaliana GN=ACT9 P... [more]
ACTD_PHYPO7.441e-2173.85Actin, spherule isoform OS=Physarum polycephalum G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00555 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00555 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623464 ID=BQ623464; Name=BQ623464; organism=Citrus sinensis; type=EST; length=558bp
CCGACCGTATGAGCAAGGAAATCACAGCACTTGCTCCAAGCAGCATGAAG
ATCAAGGTCGTGGCTCCACCAGAGAGAAAATACAGTGTTTGGATTGGAGG
ATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGATGTGGATCTCAAAGG
GCGAGTATGATGAGTCTGGTCCATCCATTGTCCACAGGAAATGCTTCTAA
GTTCTTTAAGTGCTTGATGGGTGAGTTCTTTTTTTCCATTTAGTTGGTTT
TTTGTGTCTCGTTTCGCGAACTCAAGTTGGTTGACATGGAGAAGTGCTAA
GGTTGGGGCCATTGAAGGAGGCATATCTCGATATTGATGTTATTATACAA
GCTTCTTACAGCGTTTGAGGGGGGCTTATTTCTGTACTCAACCGTCTTCC
TTGCCTTGCATTCATCTGGTGTTCAACCAAGTCTTTTTTCTTTTTTTTCC
TTTTTTTTTTTAAAGTAGGATGTTTGTAGCTGGAGATGAAAAAGTGGTTG
TGATGCCTTTTCTATTTCATTTTTCTAAATTTTCATATTTTGAAGGGTTT
TTTTCTTC
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