BQ623464

Overview
NameBQ623464
Unique NameBQ623464
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length558
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACTY_DICDI (Centractin OS=Dictyostelium discoideum GN=arpA PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.097e-19
Identity = 39/65 (60.00%), Postives = 52/65 (80.00%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 197
            DR+  E+  LAP  +KIK+ APPERKYS W+GGSILASLSTF+ +W+++ EY+E G S++HRK F
Sbjct:  319 DRLLNEVKKLAPKDIKIKITAPPERKYSAWMGGSILASLSTFKDLWVTRQEYEEDGCSVIHRKIF 383          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ARPM1_MOUSE (Actin-related protein M1 homolog OS=Mus musculus GN=Arpm1 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.515e-18
Identity = 38/64 (59.38%), Postives = 53/64 (82.81%), Query Frame = 3
Query:    6 RMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 197
            R+ K++  LAP++  ++V+APPERK SVW+GGSILASLS FQ MWI+  E++E GP+IVH++CF
Sbjct:  306 RLIKDVAKLAPANTAVQVIAPPERKISVWMGGSILASLSAFQDMWITAAEFEEVGPNIVHQRCF 369          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACT_CALFI (Actin (Fragment) OS=Calanus finmarchicus PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.314e-17
Identity = 41/46 (89.13%), Postives = 45/46 (97.83%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMW 140
            DRM KEITALAPS++KIK++APPERKYSVWIGGSILASLSTFQQMW
Sbjct:  233 DRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMW 278          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ARPM1_HUMAN (Actin-related protein M1 OS=Homo sapiens GN=ARPM1 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.716e-17
Identity = 38/64 (59.38%), Postives = 52/64 (81.25%), Query Frame = 3
Query:    6 RMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 197
            R+ K+I  +AP++  ++V+APPERK SVW+GGSILASLS FQ MWI+  E+ E GP+IVH++CF
Sbjct:  309 RLVKDIAKVAPANTAVQVIAPPERKISVWMGGSILASLSAFQDMWITAAEFKEVGPNIVHQRCF 372          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACT2_OXYNO (Actin, cytoplasmic OS=Oxytricha nova GN=MIC-ACT-1 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.241e-17
Identity = 39/64 (60.94%), Postives = 51/64 (79.69%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 194
            +R+ KEI A AP S+ +KV+A P+R+++VW GGS L SLSTF  MWI+K +YDE+G SIVHRKC
Sbjct:  311 ERLLKEIEARAPKSINVKVIASPDRRFAVWRGGSTLTSLSTFASMWITKEDYDENGASIVHRKC 374          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACT1_OXYNO (Actin, cytoplasmic OS=Oxytricha nova PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 2.241e-17
Identity = 39/64 (60.94%), Postives = 51/64 (79.69%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 194
            +R+ KEI A AP S+ +KV+A P+R+++VW GGS L SLSTF  MWI+K +YDE+G SIVHRKC
Sbjct:  311 ERLLKEIEARAPKSINVKVIASPDRRFAVWRGGSTLTSLSTFASMWITKEDYDENGASIVHRKC 374          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACT9_SOLTU (Actin-82 (Fragment) OS=Solanum tuberosum PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.926e-17
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 134
            DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ
Sbjct:  293 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 336          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACT8_SOLTU (Actin-79 (Fragment) OS=Solanum tuberosum PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.926e-17
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 134
            DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ
Sbjct:  293 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 336          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACT7_TOBAC (Actin-104 (Fragment) OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.926e-17
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 134
            DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ
Sbjct:  293 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 336          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACT6_TOBAC (Actin-103 (Fragment) OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.926e-17
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 134
            DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ
Sbjct:  293 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 336          
The following BLAST results are available for this feature:
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 388
Match NameE-valueIdentityDescription
ACTY_DICDI9.097e-1960.00Centractin OS=Dictyostelium discoideum GN=arpA PE=... [more]
ARPM1_MOUSE4.515e-1859.38Actin-related protein M1 homolog OS=Mus musculus G... [more]
ACT_CALFI1.314e-1789.13Actin (Fragment) OS=Calanus finmarchicus PE=2 SV=1[more]
ARPM1_HUMAN1.716e-1759.38Actin-related protein M1 OS=Homo sapiens GN=ARPM1 ... [more]
ACT2_OXYNO2.241e-1760.94Actin, cytoplasmic OS=Oxytricha nova GN=MIC-ACT-1 ... [more]
ACT1_OXYNO2.241e-1760.94Actin, cytoplasmic OS=Oxytricha nova PE=3 SV=1[more]
ACT9_SOLTU2.926e-17100.00Actin-82 (Fragment) OS=Solanum tuberosum PE=3 SV=1[more]
ACT8_SOLTU2.926e-17100.00Actin-79 (Fragment) OS=Solanum tuberosum PE=3 SV=1[more]
ACT7_TOBAC2.926e-17100.00Actin-104 (Fragment) OS=Nicotiana tabacum PE=3 SV=... [more]
ACT6_TOBAC2.926e-17100.00Actin-103 (Fragment) OS=Nicotiana tabacum PE=3 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00555 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00555 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623464 ID=BQ623464; Name=BQ623464; organism=Citrus sinensis; type=EST; length=558bp
CCGACCGTATGAGCAAGGAAATCACAGCACTTGCTCCAAGCAGCATGAAG
ATCAAGGTCGTGGCTCCACCAGAGAGAAAATACAGTGTTTGGATTGGAGG
ATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGATGTGGATCTCAAAGG
GCGAGTATGATGAGTCTGGTCCATCCATTGTCCACAGGAAATGCTTCTAA
GTTCTTTAAGTGCTTGATGGGTGAGTTCTTTTTTTCCATTTAGTTGGTTT
TTTGTGTCTCGTTTCGCGAACTCAAGTTGGTTGACATGGAGAAGTGCTAA
GGTTGGGGCCATTGAAGGAGGCATATCTCGATATTGATGTTATTATACAA
GCTTCTTACAGCGTTTGAGGGGGGCTTATTTCTGTACTCAACCGTCTTCC
TTGCCTTGCATTCATCTGGTGTTCAACCAAGTCTTTTTTCTTTTTTTTCC
TTTTTTTTTTTAAAGTAGGATGTTTGTAGCTGGAGATGAAAAAGTGGTTG
TGATGCCTTTTCTATTTCATTTTTCTAAATTTTCATATTTTGAAGGGTTT
TTTTCTTC
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