BQ623464

Overview
NameBQ623464
Unique NameBQ623464
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length558
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACT5_TOBAC (Actin-93 (Fragment) OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.926e-17
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 3 
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 134
            DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ
Sbjct:  293 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 336
[Close]
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACT5_SOLTU (Actin-66 (Fragment) OS=Solanum tuberosum PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.926e-17
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 3 
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 134
            DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ
Sbjct:  293 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 336
[Close]
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACT4_TOBAC (Actin-66 (Fragment) OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.926e-17
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 3 
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 134
            DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ
Sbjct:  293 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 336
[Close]
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACT3_SOLLC (Actin-52 (Fragment) OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.926e-17
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 3 
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 134
            DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ
Sbjct:  293 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 336
[Close]
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACT2_SOLLC (Actin-51 (Fragment) OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.926e-17
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 3 
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 134
            DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ
Sbjct:  293 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 336
[Close]
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACT1_SOLLC (Actin-41 (Fragment) OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 2.926e-17
Identity = 44/44 (100.00%), Postives = 44/44 (100.00%), Query Frame = 3 
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 134
            DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ
Sbjct:  293 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 336
[Close]
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACTY_MOUSE (Beta-centractin OS=Mus musculus GN=Actr1b PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.991e-17
Identity = 39/65 (60.00%), Postives = 48/65 (73.85%), Query Frame = 3 
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 197
            DR+  E+  LAP  +KIK+ AP ER YS WIGGSILASL TF++MW+SK EY+E G   +HRK F
Sbjct:  312 DRLLSEVKKLAPKDVKIKISAPQERLYSTWIGGSILASLDTFKKMWVSKKEYEEDGSRAIHRKTF 376
[Close]
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACTY_HUMAN (Beta-centractin OS=Homo sapiens GN=ACTR1B PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.991e-17
Identity = 39/65 (60.00%), Postives = 48/65 (73.85%), Query Frame = 3 
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 197
            DR+  E+  LAP  +KIK+ AP ER YS WIGGSILASL TF++MW+SK EY+E G   +HRK F
Sbjct:  312 DRLLSEVKKLAPKDIKIKISAPQERLYSTWIGGSILASLDTFKKMWVSKKEYEEDGSRAIHRKTF 376
[Close]
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACTY_BOVIN (Beta-centractin OS=Bos taurus GN=ACTR1B PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 4.991e-17
Identity = 39/65 (60.00%), Postives = 48/65 (73.85%), Query Frame = 3 
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 197
            DR+  E+  LAP  +KIK+ AP ER YS WIGGSILASL TF++MW+SK EY+E G   +HRK F
Sbjct:  312 DRLLSEVKKLAPKDVKIKISAPQERLYSTWIGGSILASLDTFKKMWVSKKEYEEDGSRAIHRKTF 376
[Close]
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACT_EUPCR (Actin, cytoplasmic OS=Euplotes crassus PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 6.519e-17
Identity = 39/64 (60.94%), Postives = 50/64 (78.12%), Query Frame = 3 
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 194
            +R+ KE+  LAP +MK+KV+A P+RKY+VW GGS LA LSTF  MW++K +Y E G SIVHRKC
Sbjct:  315 ERLYKEMKDLAPQTMKVKVIASPDRKYAVWRGGSTLAKLSTFAGMWVTKEDYAEFGESIVHRKC 378
The following BLAST results are available for this feature:
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 388
Match NameE-valueIdentityDescription
ACT5_TOBAC2.926e-17100.00Actin-93 (Fragment) OS=Nicotiana tabacum PE=3 SV=1[more]
ACT5_SOLTU2.926e-17100.00Actin-66 (Fragment) OS=Solanum tuberosum PE=3 SV=1[more]
ACT4_TOBAC2.926e-17100.00Actin-66 (Fragment) OS=Nicotiana tabacum PE=3 SV=1[more]
ACT3_SOLLC2.926e-17100.00Actin-52 (Fragment) OS=Solanum lycopersicum PE=3 S... [more]
ACT2_SOLLC2.926e-17100.00Actin-51 (Fragment) OS=Solanum lycopersicum PE=3 S... [more]
ACT1_SOLLC2.926e-17100.00Actin-41 (Fragment) OS=Solanum lycopersicum PE=3 S... [more]
ACTY_MOUSE4.991e-1760.00Beta-centractin OS=Mus musculus GN=Actr1b PE=1 SV=... [more]
ACTY_HUMAN4.991e-1760.00Beta-centractin OS=Homo sapiens GN=ACTR1B PE=1 SV=... [more]
ACTY_BOVIN4.991e-1760.00Beta-centractin OS=Bos taurus GN=ACTR1B PE=2 SV=1[more]
ACT_EUPCR6.519e-1760.94Actin, cytoplasmic OS=Euplotes crassus PE=3 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00555 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00555 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623464 ID=BQ623464; Name=BQ623464; organism=Citrus sinensis; type=EST; length=558bp
CCGACCGTATGAGCAAGGAAATCACAGCACTTGCTCCAAGCAGCATGAAG
ATCAAGGTCGTGGCTCCACCAGAGAGAAAATACAGTGTTTGGATTGGAGG
ATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGATGTGGATCTCAAAGG
GCGAGTATGATGAGTCTGGTCCATCCATTGTCCACAGGAAATGCTTCTAA
GTTCTTTAAGTGCTTGATGGGTGAGTTCTTTTTTTCCATTTAGTTGGTTT
TTTGTGTCTCGTTTCGCGAACTCAAGTTGGTTGACATGGAGAAGTGCTAA
GGTTGGGGCCATTGAAGGAGGCATATCTCGATATTGATGTTATTATACAA
GCTTCTTACAGCGTTTGAGGGGGGCTTATTTCTGTACTCAACCGTCTTCC
TTGCCTTGCATTCATCTGGTGTTCAACCAAGTCTTTTTTCTTTTTTTTCC
TTTTTTTTTTTAAAGTAGGATGTTTGTAGCTGGAGATGAAAAAGTGGTTG
TGATGCCTTTTCTATTTCATTTTTCTAAATTTTCATATTTTGAAGGGTTT
TTTTCTTC
back to top