BQ623464

Overview
NameBQ623464
Unique NameBQ623464
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length558
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACT_HISCA (Actin OS=Histriculus cavicola PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.112e-16
Identity = 38/64 (59.38%), Postives = 50/64 (78.12%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 194
            +R+ KEI   AP S+ +KV+A P+R+++VW GGS L SLSTF  MWI+K +YDE+G SIVHRKC
Sbjct:  311 ERLLKEIENRAPKSINVKVIASPDRRFAVWRGGSTLTSLSTFASMWITKEDYDENGASIVHRKC 374          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACT4_SOLTU (Actin-65 (Fragment) OS=Solanum tuberosum PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.112e-16
Identity = 43/43 (100.00%), Postives = 43/43 (100.00%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQ 131
            DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQ
Sbjct:  294 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQ 336          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACT3_TOBAC (Actin-54 (Fragment) OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.112e-16
Identity = 43/45 (95.56%), Postives = 44/45 (97.78%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQM 137
            DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLST QQ+
Sbjct:  295 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTLQQV 339          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACT2_OXYFA (Actin, cytoplasmic OS=Oxytricha fallax PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.112e-16
Identity = 38/64 (59.38%), Postives = 50/64 (78.12%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 194
            +R+ KEI   AP S+ +KV+A P+R+++VW GGS L SLSTF  MWI+K +YDE+G SIVHRKC
Sbjct:  293 ERLLKEIENRAPKSINVKVIASPDRRFAVWRGGSTLTSLSTFASMWITKEDYDENGASIVHRKC 356          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACT1_SOLTU (Actin-42 (Fragment) OS=Solanum tuberosum PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.112e-16
Identity = 43/44 (97.73%), Postives = 43/44 (97.73%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 134
            DRMSKEITALAP SMKIKVVAPPERKYSVWIGGSILASLSTFQQ
Sbjct:  289 DRMSKEITALAPCSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 332          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACT1_OXYTR (Actin, cytoplasmic OS=Oxytricha trifallax PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.112e-16
Identity = 38/64 (59.38%), Postives = 50/64 (78.12%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 194
            +R+ KEI   AP S+ +KV+A P+R+++VW GGS L SLSTF  MWI+K +YDE+G SIVHRKC
Sbjct:  311 ERLLKEIENRAPKSINVKVIASPDRRFAVWRGGSTLTSLSTFASMWITKEDYDENGASIVHRKC 374          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACT1_OXYFA (Actin, macronuclear OS=Oxytricha fallax PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.112e-16
Identity = 38/64 (59.38%), Postives = 50/64 (78.12%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 194
            +R+ KEI   AP S+ +KV+A P+R+++VW GGS L SLSTF  MWI+K +YDE+G SIVHRKC
Sbjct:  293 ERLLKEIENRAPKSINVKVIASPDRRFAVWRGGSTLTSLSTFASMWITKEDYDENGASIVHRKC 356          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACTZ_RAT (Alpha-centractin OS=Rattus norvegicus GN=Actr1a PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.452e-16
Identity = 38/65 (58.46%), Postives = 48/65 (73.85%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 197
            DR+  E+  LAP  +KI++ AP ER YS WIGGSILASL TF++MW+SK EY+E G   +HRK F
Sbjct:  312 DRLLSEVKKLAPKDVKIRISAPQERLYSTWIGGSILASLDTFKKMWVSKKEYEEDGARSIHRKTF 376          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACTZ_MOUSE (Alpha-centractin OS=Mus musculus GN=Actr1a PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.452e-16
Identity = 38/65 (58.46%), Postives = 48/65 (73.85%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 197
            DR+  E+  LAP  +KI++ AP ER YS WIGGSILASL TF++MW+SK EY+E G   +HRK F
Sbjct:  312 DRLLSEVKKLAPKDVKIRISAPQERLYSTWIGGSILASLDTFKKMWVSKKEYEEDGARSIHRKTF 376          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACTZ_MACFA (Alpha-centractin OS=Macaca fascicularis GN=ACTR1A PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.452e-16
Identity = 38/65 (58.46%), Postives = 48/65 (73.85%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 197
            DR+  E+  LAP  +KI++ AP ER YS WIGGSILASL TF++MW+SK EY+E G   +HRK F
Sbjct:  312 DRLLSEVKKLAPKDVKIRISAPQERLYSTWIGGSILASLDTFKKMWVSKKEYEEDGARSIHRKTF 376          
The following BLAST results are available for this feature:
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 388
Match NameE-valueIdentityDescription
ACT_HISCA1.112e-1659.38Actin OS=Histriculus cavicola PE=3 SV=2[more]
ACT4_SOLTU1.112e-16100.00Actin-65 (Fragment) OS=Solanum tuberosum PE=3 SV=1[more]
ACT3_TOBAC1.112e-1695.56Actin-54 (Fragment) OS=Nicotiana tabacum PE=3 SV=1[more]
ACT2_OXYFA1.112e-1659.38Actin, cytoplasmic OS=Oxytricha fallax PE=3 SV=1[more]
ACT1_SOLTU1.112e-1697.73Actin-42 (Fragment) OS=Solanum tuberosum PE=3 SV=1[more]
ACT1_OXYTR1.112e-1659.38Actin, cytoplasmic OS=Oxytricha trifallax PE=3 SV=... [more]
ACT1_OXYFA1.112e-1659.38Actin, macronuclear OS=Oxytricha fallax PE=3 SV=1[more]
ACTZ_RAT1.452e-1658.46Alpha-centractin OS=Rattus norvegicus GN=Actr1a PE... [more]
ACTZ_MOUSE1.452e-1658.46Alpha-centractin OS=Mus musculus GN=Actr1a PE=2 SV... [more]
ACTZ_MACFA1.452e-1658.46Alpha-centractin OS=Macaca fascicularis GN=ACTR1A ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00555 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00555 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623464 ID=BQ623464; Name=BQ623464; organism=Citrus sinensis; type=EST; length=558bp
CCGACCGTATGAGCAAGGAAATCACAGCACTTGCTCCAAGCAGCATGAAG
ATCAAGGTCGTGGCTCCACCAGAGAGAAAATACAGTGTTTGGATTGGAGG
ATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGATGTGGATCTCAAAGG
GCGAGTATGATGAGTCTGGTCCATCCATTGTCCACAGGAAATGCTTCTAA
GTTCTTTAAGTGCTTGATGGGTGAGTTCTTTTTTTCCATTTAGTTGGTTT
TTTGTGTCTCGTTTCGCGAACTCAAGTTGGTTGACATGGAGAAGTGCTAA
GGTTGGGGCCATTGAAGGAGGCATATCTCGATATTGATGTTATTATACAA
GCTTCTTACAGCGTTTGAGGGGGGCTTATTTCTGTACTCAACCGTCTTCC
TTGCCTTGCATTCATCTGGTGTTCAACCAAGTCTTTTTTCTTTTTTTTCC
TTTTTTTTTTTAAAGTAGGATGTTTGTAGCTGGAGATGAAAAAGTGGTTG
TGATGCCTTTTCTATTTCATTTTTCTAAATTTTCATATTTTGAAGGGTTT
TTTTCTTC
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