BQ623464

Overview
NameBQ623464
Unique NameBQ623464
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length558
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACTZ_HUMAN (Alpha-centractin OS=Homo sapiens GN=ACTR1A PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.452e-16
Identity = 38/65 (58.46%), Postives = 48/65 (73.85%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 197
            DR+  E+  LAP  +KI++ AP ER YS WIGGSILASL TF++MW+SK EY+E G   +HRK F
Sbjct:  312 DRLLSEVKKLAPKDVKIRISAPQERLYSTWIGGSILASLDTFKKMWVSKKEYEEDGARSIHRKTF 376          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACTZ_CANFA (Alpha-centractin OS=Canis familiaris GN=ACTR1A PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.452e-16
Identity = 38/65 (58.46%), Postives = 48/65 (73.85%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 197
            DR+  E+  LAP  +KI++ AP ER YS WIGGSILASL TF++MW+SK EY+E G   +HRK F
Sbjct:  312 DRLLSEVKKLAPKDVKIRISAPQERLYSTWIGGSILASLDTFKKMWVSKKEYEEDGARSIHRKTF 376          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACT2_SOLTU (Actin-46 (Fragment) OS=Solanum tuberosum PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.452e-16
Identity = 43/44 (97.73%), Postives = 43/44 (97.73%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 134
            DRMSKEI ALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ
Sbjct:  293 DRMSKEIQALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 336          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACTZ_PNECA (Actin-2 OS=Pneumocystis carinii PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.897e-16
Identity = 41/63 (65.08%), Postives = 48/63 (76.19%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRK 191
            DR+  EI  LA   +KIK+ APPERKYS WIGGSILASLSTF++MW+S  EY E  P I+HRK
Sbjct:  322 DRLLSEIRRLAVKDVKIKIFAPPERKYSTWIGGSILASLSTFRKMWVSAEEYQED-PDIIHRK 383          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACT2_TOBAC (Actin-53 (Fragment) OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.897e-16
Identity = 42/44 (95.45%), Postives = 44/44 (100.00%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 134
            DRMSKEI+ALAP+SMKIKVVAPPERKYSVWIGGSILASLSTFQQ
Sbjct:  293 DRMSKEISALAPNSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 336          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACTY_DROME (Actin-like protein 53D OS=Drosophila melanogaster GN=Arp53D PE=2 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 2.477e-16
Identity = 37/64 (57.81%), Postives = 51/64 (79.69%), Query Frame = 3
Query:    6 RMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 197
            R  +++T +AP S++IKV A P+R++SVW GGS+LASL++FQ MWI   EY+E G +IVHRKCF
Sbjct:  313 RFLQDLTEMAPPSIRIKVNASPDRRFSVWTGGSVLASLTSFQNMWIDSLEYEEVGSAIVHRKCF 376          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACT26_DICDI (Putative actin-26 OS=Dictyostelium discoideum GN=act26 PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.477e-16
Identity = 39/63 (61.90%), Postives = 50/63 (79.37%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRK 191
            DR+  ++  LAP++MKI +VA PERK  VWIGGSIL +L  FQ+MWISK EYDE GPSI+++K
Sbjct:  309 DRIYNQLRELAPNNMKILIVASPERKNLVWIGGSILTTLPLFQEMWISKEEYDEHGPSIINKK 371          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACT4_SOLLC (Actin-105 (Fragment) OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.226e-16
Identity = 42/44 (95.45%), Postives = 42/44 (95.45%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQ 134
            DRMSKE TALAPSSMKIKVVAPPE KYSVWIGGSILASLSTFQQ
Sbjct:  293 DRMSKEFTALAPSSMKIKVVAPPESKYSVWIGGSILASLSTFQQ 336          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACL6B_RAT (Actin-like protein 6B OS=Rattus norvegicus GN=Actl6b PE=1 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 2.097e-15
Identity = 39/67 (58.21%), Postives = 50/67 (74.63%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPP---ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 194
            DR+++E++   P SM++K++A     ERK+S WIGGSILASL TFQQMWISK EY+E G   V RKC
Sbjct:  359 DRLNRELSQKTPPSMRLKLIASNSTMERKFSPWIGGSILASLGTFQQMWISKQEYEEGGKQCVERKC 425          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACL6B_MOUSE (Actin-like protein 6B OS=Mus musculus GN=Actl6b PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.097e-15
Identity = 39/67 (58.21%), Postives = 50/67 (74.63%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPP---ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 194
            DR+++E++   P SM++K++A     ERK+S WIGGSILASL TFQQMWISK EY+E G   V RKC
Sbjct:  359 DRLNRELSQKTPPSMRLKLIASNSTMERKFSPWIGGSILASLGTFQQMWISKQEYEEGGKQCVERKC 425          
The following BLAST results are available for this feature:
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 388
Match NameE-valueIdentityDescription
ACTZ_HUMAN1.452e-1658.46Alpha-centractin OS=Homo sapiens GN=ACTR1A PE=1 SV... [more]
ACTZ_CANFA1.452e-1658.46Alpha-centractin OS=Canis familiaris GN=ACTR1A PE=... [more]
ACT2_SOLTU1.452e-1697.73Actin-46 (Fragment) OS=Solanum tuberosum PE=3 SV=1[more]
ACTZ_PNECA1.897e-1665.08Actin-2 OS=Pneumocystis carinii PE=2 SV=1[more]
ACT2_TOBAC1.897e-1695.45Actin-53 (Fragment) OS=Nicotiana tabacum PE=3 SV=1[more]
ACTY_DROME2.477e-1657.81Actin-like protein 53D OS=Drosophila melanogaster ... [more]
ACT26_DICDI2.477e-1661.90Putative actin-26 OS=Dictyostelium discoideum GN=a... [more]
ACT4_SOLLC4.226e-1695.45Actin-105 (Fragment) OS=Solanum lycopersicum PE=3 ... [more]
ACL6B_RAT2.097e-1558.21Actin-like protein 6B OS=Rattus norvegicus GN=Actl... [more]
ACL6B_MOUSE2.097e-1558.21Actin-like protein 6B OS=Mus musculus GN=Actl6b PE... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00555 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00555 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623464 ID=BQ623464; Name=BQ623464; organism=Citrus sinensis; type=EST; length=558bp
CCGACCGTATGAGCAAGGAAATCACAGCACTTGCTCCAAGCAGCATGAAG
ATCAAGGTCGTGGCTCCACCAGAGAGAAAATACAGTGTTTGGATTGGAGG
ATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGATGTGGATCTCAAAGG
GCGAGTATGATGAGTCTGGTCCATCCATTGTCCACAGGAAATGCTTCTAA
GTTCTTTAAGTGCTTGATGGGTGAGTTCTTTTTTTCCATTTAGTTGGTTT
TTTGTGTCTCGTTTCGCGAACTCAAGTTGGTTGACATGGAGAAGTGCTAA
GGTTGGGGCCATTGAAGGAGGCATATCTCGATATTGATGTTATTATACAA
GCTTCTTACAGCGTTTGAGGGGGGCTTATTTCTGTACTCAACCGTCTTCC
TTGCCTTGCATTCATCTGGTGTTCAACCAAGTCTTTTTTCTTTTTTTTCC
TTTTTTTTTTTAAAGTAGGATGTTTGTAGCTGGAGATGAAAAAGTGGTTG
TGATGCCTTTTCTATTTCATTTTTCTAAATTTTCATATTTTGAAGGGTTT
TTTTCTTC
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