BQ623464

Overview
NameBQ623464
Unique NameBQ623464
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length558
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACTT2_MOUSE (Actin-related protein T2 OS=Mus musculus GN=Actrt2 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.746e-14
Identity = 33/65 (50.77%), Postives = 47/65 (72.31%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 197
            DR+ KE+  LA   + IK+ APP+R +S WIG SI+ SLS+F+QMWI+  ++ E G S+V R+CF
Sbjct:  313 DRLLKELEQLASKGVPIKITAPPDRWFSTWIGASIVTSLSSFKQMWITAADFKEFGVSVVQRRCF 377          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACTT2_MACFA (Actin-related protein T2 OS=Macaca fascicularis GN=ACTRT2 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.151e-13
Identity = 32/65 (49.23%), Postives = 46/65 (70.77%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 197
            DR+ KE+  LA     IK+ APP+R +S WIG SI+ SLS+F+QMW++  ++ E G S+V R+CF
Sbjct:  313 DRLLKELEQLASKDTPIKITAPPDRWFSTWIGASIVTSLSSFKQMWVTAADFKEFGSSVVQRRCF 377          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACTT2_HUMAN (Actin-related protein T2 OS=Homo sapiens GN=ACTRT2 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 1.151e-13
Identity = 32/65 (49.23%), Postives = 46/65 (70.77%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 197
            DR+ KE+  LA     IK+ APP+R +S WIG SI+ SLS+F+QMW++  ++ E G S+V R+CF
Sbjct:  313 DRLLKELEQLASKDTPIKITAPPDRWFSTWIGASIVTSLSSFKQMWVTAADFKEFGTSVVQRRCF 377          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ARP4_EMENI (Actin-related protein 4 OS=Emericella nidulans GN=arp4 PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.963e-13
Identity = 36/67 (53.73%), Postives = 50/67 (74.63%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAP---PERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 194
            DR+++E+  L P   ++++ AP    ER++S WIGGSILASL TF QMWISK E+DE GP+IV ++C
Sbjct:  406 DRLNQELMQLYPGP-RVRISAPGNTSERRFSSWIGGSILASLGTFHQMWISKKEFDEHGPNIVEKRC 471          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACTT2_BOVIN (Actin-related protein T2 OS=Bos taurus GN=ACTRT2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.564e-13
Identity = 30/65 (46.15%), Postives = 46/65 (70.77%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 197
            DR+ +E+  LA     IK+ APP+R +S WIG SI+ SLS+F+QMW++  ++ E G S++ R+CF
Sbjct:  313 DRLLRELEQLASKGTPIKITAPPDRWFSTWIGASIVTSLSSFKQMWVTSADFKEFGTSVIQRRCF 377          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ARP4_ORYSJ (Actin-related protein 4 OS=Oryza sativa subsp. japonica GN=ARP4 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.348e-13
Identity = 35/67 (52.24%), Postives = 48/67 (71.64%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPP---ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 194
            +R+ KE+   +  + ++KV+A     ER++SVWIGGSILASL +FQQMW SK EY+E G S + RKC
Sbjct:  376 ERLEKEVLEESSGNTRVKVLASGNSVERRFSVWIGGSILASLGSFQQMWFSKAEYEEHGVSYIQRKC 442          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ARP4_ORYSI (Actin-related protein 4 OS=Oryza sativa subsp. indica GN=ARP4 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 3.348e-13
Identity = 35/67 (52.24%), Postives = 48/67 (71.64%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPP---ERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 194
            +R+ KE+   +  + ++KV+A     ER++SVWIGGSILASL +FQQMW SK EY+E G S + RKC
Sbjct:  376 ERLEKEVLEESSGNTRVKVLASGNSVERRFSVWIGGSILASLGSFQQMWFSKAEYEEHGVSYIQRKC 442          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ARP4_GIBZE (Actin-related protein 4 OS=Gibberella zeae GN=ARP4 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.348e-13
Identity = 35/67 (52.24%), Postives = 50/67 (74.63%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAP---PERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 194
            DR++ E+ A+ P  +KIK+ A     ER++  WIGGSILASL TF QMWIS+ EY+E+GP++V ++C
Sbjct:  405 DRLNTELMAMYPG-LKIKIHAAGLTSERRFGAWIGGSILASLGTFHQMWISRKEYEENGPNVVEKRC 470          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACTT1_RAT (Actin-related protein T1 OS=Rattus norvegicus GN=Actrt1 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.348e-13
Identity = 32/65 (49.23%), Postives = 45/65 (69.23%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 197
            DR+ KE+  LA     IK+ A P+R YS WIGGS++ SL+TF+QMW++  ++ E G  +V RKCF
Sbjct:  312 DRLLKELEVLAFEGTPIKITASPDRCYSAWIGGSVMTSLTTFKQMWVTAEDFKEYGAFVVQRKCF 376          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACTT1_MACFA (Actin-related protein T1 OS=Macaca fascicularis GN=ACTRT1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.662e-12
Identity = 29/65 (44.62%), Postives = 45/65 (69.23%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 197
            +R+ KE+  LA     IK+ A P+R +S WIG SI+ S+S+F+QMW++  ++ E G S+V R+CF
Sbjct:  311 ERLMKEVEQLASKGTPIKITASPDRCFSAWIGASIMTSMSSFKQMWVTSADFKEYGTSVVQRRCF 375          
The following BLAST results are available for this feature:
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 388
Match NameE-valueIdentityDescription
ACTT2_MOUSE6.746e-1450.77Actin-related protein T2 OS=Mus musculus GN=Actrt2... [more]
ACTT2_MACFA1.151e-1349.23Actin-related protein T2 OS=Macaca fascicularis GN... [more]
ACTT2_HUMAN1.151e-1349.23Actin-related protein T2 OS=Homo sapiens GN=ACTRT2... [more]
ARP4_EMENI1.963e-1353.73Actin-related protein 4 OS=Emericella nidulans GN=... [more]
ACTT2_BOVIN2.564e-1346.15Actin-related protein T2 OS=Bos taurus GN=ACTRT2 P... [more]
ARP4_ORYSJ3.348e-1352.24Actin-related protein 4 OS=Oryza sativa subsp. jap... [more]
ARP4_ORYSI3.348e-1352.24Actin-related protein 4 OS=Oryza sativa subsp. ind... [more]
ARP4_GIBZE3.348e-1352.24Actin-related protein 4 OS=Gibberella zeae GN=ARP4... [more]
ACTT1_RAT3.348e-1349.23Actin-related protein T1 OS=Rattus norvegicus GN=A... [more]
ACTT1_MACFA1.662e-1244.62Actin-related protein T1 OS=Macaca fascicularis GN... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00555 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00555 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623464 ID=BQ623464; Name=BQ623464; organism=Citrus sinensis; type=EST; length=558bp
CCGACCGTATGAGCAAGGAAATCACAGCACTTGCTCCAAGCAGCATGAAG
ATCAAGGTCGTGGCTCCACCAGAGAGAAAATACAGTGTTTGGATTGGAGG
ATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGATGTGGATCTCAAAGG
GCGAGTATGATGAGTCTGGTCCATCCATTGTCCACAGGAAATGCTTCTAA
GTTCTTTAAGTGCTTGATGGGTGAGTTCTTTTTTTCCATTTAGTTGGTTT
TTTGTGTCTCGTTTCGCGAACTCAAGTTGGTTGACATGGAGAAGTGCTAA
GGTTGGGGCCATTGAAGGAGGCATATCTCGATATTGATGTTATTATACAA
GCTTCTTACAGCGTTTGAGGGGGGCTTATTTCTGTACTCAACCGTCTTCC
TTGCCTTGCATTCATCTGGTGTTCAACCAAGTCTTTTTTCTTTTTTTTCC
TTTTTTTTTTTAAAGTAGGATGTTTGTAGCTGGAGATGAAAAAGTGGTTG
TGATGCCTTTTCTATTTCATTTTTCTAAATTTTCATATTTTGAAGGGTTT
TTTTCTTC
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