BQ623464

Overview
NameBQ623464
Unique NameBQ623464
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length558
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7281 contig Csv1_Contig7281:1057..1613. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACL7B_RAT (Actin-like protein 7B OS=Rattus norvegicus GN=Actl7b PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.837e-11
Identity = 32/64 (50.00%), Postives = 43/64 (67.19%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 194
            +R  +E++ L P      V A PERK SVW GGSILASL  FQQ+W+SK E++E G + ++ KC
Sbjct:  355 ERFQRELSLLCPGDSPT-VAAAPERKTSVWTGGSILASLQAFQQLWVSKEEFEERGCAAIYSKC 417          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACL7B_MOUSE (Actin-like protein 7B OS=Mus musculus GN=Actl7b PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.837e-11
Identity = 32/64 (50.00%), Postives = 43/64 (67.19%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 194
            +R  +E++ L P      V A PERK SVW GGSILASL  FQQ+W+SK E++E G + ++ KC
Sbjct:  356 ERFQRELSLLCPGDSPT-VAAAPERKTSVWTGGSILASLQAFQQLWVSKEEFEERGCAAIYSKC 418          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACL7B_HUMAN (Actin-like protein 7B OS=Homo sapiens GN=ACTL7B PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.399e-11
Identity = 32/64 (50.00%), Postives = 42/64 (65.62%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 194
            +R  +E++ L P      V A PERK SVW GGSILASL  FQQ+W+SK E++E G   ++ KC
Sbjct:  353 ERFQRELSLLCPGDSPA-VAAAPERKTSVWTGGSILASLQAFQQLWVSKEEFEERGSVAIYSKC 415          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACL7B_MACFA (Actin-like protein 7B OS=Macaca fascicularis GN=ACTL7B PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.134e-11
Identity = 32/64 (50.00%), Postives = 41/64 (64.06%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKC 194
            +R  +E++ L P      V A PERK SVW GGSILASL  FQQ+W+SK E+ E G   ++ KC
Sbjct:  353 ERFQRELSLLCPGDSPA-VAAAPERKTSVWTGGSILASLQAFQQLWVSKEEFQERGSMAIYSKC 415          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACT27_DICDI (Putative actin-27 OS=Dictyostelium discoideum GN=act27 PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 4.093e-11
Identity = 33/60 (55.00%), Postives = 43/60 (71.67%), Query Frame = 3
Query:    6 RMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVH 185
            RM K +T LAPS+ +I + A P+RK SVWIGGSIL  +  FQ++ I K +YDE GPS V+
Sbjct:  296 RMYKGLTQLAPSTTEIVINAEPDRKNSVWIGGSILGLVPNFQELCIDKEDYDEYGPSFVN 355          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACL7A_BOVIN (Actin-like protein 7A OS=Bos taurus GN=ACTL7A PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 6.981e-11
Identity = 29/65 (44.62%), Postives = 45/65 (69.23%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSIVHRKCF 197
            +R+ KE++++ P+    +V   PER  +VW GGSILASL  FQ +W+ + EY+E GP  ++R+CF
Sbjct:  375 NRLQKELSSMCPNDTP-QVSVLPERDTAVWTGGSILASLQGFQPLWVHRSEYEEHGPFFLYRRCF 438          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ARP1_YEAST (Centractin OS=Saccharomyces cerevisiae GN=ARP1 PE=1 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.118e-11
Identity = 29/59 (49.15%), Postives = 40/59 (67.80%), Query Frame = 3
Query:    3 DRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWISKGEYDESGPSI 179
            DRM  ++ AL   + KIK++AP ERKY+ WIGGSIL  LSTFQ++W  K ++ E    +
Sbjct:  321 DRMLWDLEALTKGTSKIKIIAPSERKYTTWIGGSILTGLSTFQRLWTKKSDWLEDSTRV 379          
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Match: ACT_DICVI (Actin (Fragment) OS=Dictyocaulus viviparus PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 9.118e-11
Identity = 31/32 (96.88%), Postives = 31/32 (96.88%), Query Frame = 3
Query:  102 SILASLSTFQQMWISKGEYDESGPSIVHRKCF 197
            SILASLSTFQQMWISK EYDESGPSIVHRKCF
Sbjct:    2 SILASLSTFQQMWISKQEYDESGPSIVHRKCF 33          
The following BLAST results are available for this feature:
BLAST of BQ623464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 388
Match NameE-valueIdentityDescription
ACL7B_RAT1.837e-1150.00Actin-like protein 7B OS=Rattus norvegicus GN=Actl... [more]
ACL7B_MOUSE1.837e-1150.00Actin-like protein 7B OS=Mus musculus GN=Actl7b PE... [more]
ACL7B_HUMAN2.399e-1150.00Actin-like protein 7B OS=Homo sapiens GN=ACTL7B PE... [more]
ACL7B_MACFA3.134e-1150.00Actin-like protein 7B OS=Macaca fascicularis GN=AC... [more]
ACT27_DICDI4.093e-1155.00Putative actin-27 OS=Dictyostelium discoideum GN=a... [more]
ACL7A_BOVIN6.981e-1144.62Actin-like protein 7A OS=Bos taurus GN=ACTL7A PE=2... [more]
ARP1_YEAST9.118e-1149.15Centractin OS=Saccharomyces cerevisiae GN=ARP1 PE=... [more]
ACT_DICVI9.118e-1196.88Actin (Fragment) OS=Dictyocaulus viviparus PE=3 SV... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00555 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00555 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623464 ID=BQ623464; Name=BQ623464; organism=Citrus sinensis; type=EST; length=558bp
CCGACCGTATGAGCAAGGAAATCACAGCACTTGCTCCAAGCAGCATGAAG
ATCAAGGTCGTGGCTCCACCAGAGAGAAAATACAGTGTTTGGATTGGAGG
ATCAATCCTTGCATCCCTCAGCACCTTCCAGCAGATGTGGATCTCAAAGG
GCGAGTATGATGAGTCTGGTCCATCCATTGTCCACAGGAAATGCTTCTAA
GTTCTTTAAGTGCTTGATGGGTGAGTTCTTTTTTTCCATTTAGTTGGTTT
TTTGTGTCTCGTTTCGCGAACTCAAGTTGGTTGACATGGAGAAGTGCTAA
GGTTGGGGCCATTGAAGGAGGCATATCTCGATATTGATGTTATTATACAA
GCTTCTTACAGCGTTTGAGGGGGGCTTATTTCTGTACTCAACCGTCTTCC
TTGCCTTGCATTCATCTGGTGTTCAACCAAGTCTTTTTTCTTTTTTTTCC
TTTTTTTTTTTAAAGTAGGATGTTTGTAGCTGGAGATGAAAAAGTGGTTG
TGATGCCTTTTCTATTTCATTTTTCTAAATTTTCATATTTTGAAGGGTTT
TTTTCTTC
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