BQ623467

Overview
NameBQ623467
Unique NameBQ623467
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length684
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig24 contig Csv1_Contig24:1..684. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623467 vs. ExPASy Swiss-Prot
Match: GLR27_ARATH (Glutamate receptor 2.7 OS=Arabidopsis thaliana GN=GLR2.7 PE=2 SV=3)

HSP 1 Score: 158.688 bits (400), Expect = 2.670e-38
Identity = 88/217 (40.55%), Postives = 116/217 (53.46%), Query Frame = 1
Query:   19 FDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAXXXXXXXXXXXXXWILEHRLNDEFRGPPRKQIVTVLWFSFSTMFFAHRENTVSTLGRXXXXXXXXXXXXXTSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSNH 669
            +DA VGD+ IV NR+  VDFT PY ESG+ ++ P++  N + W FLRP++  +W              WILEHR+N +FRGPP  QI T  WF+FSTM FAHRE  VS L R               SYTA+LTS  TV+ L   +     L+  N  +GYQ G+F    L++     +S+L   GS  E      N T+ A  DE  YI + LS +
Sbjct:  534 YDAVVGDVTIVANRSLYVDFTLPYTESGVSMMVPLKD-NKNTWVFLRPWSLDLWVTTACFFVFIGFIVWILEHRVNTDFRGPPHHQIGTSFWFAFSTMNFAHREKVVSNLARFVVLVWCFVVLVLIQSYTANLTSFFTVKLLQPTVTNWKDLIKFNKNIGYQRGTFVRE-LLKSQGFDESQLKPFGSAVECDELFSNGTITASFDEVAYIKVILSQN 748          
BLAST of BQ623467 vs. ExPASy Swiss-Prot
Match: GLR24_ARATH (Glutamate receptor 2.4 OS=Arabidopsis thaliana GN=GLR2.4 PE=2 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 5.567e-36
Identity = 90/225 (40.00%), Postives = 117/225 (52.00%), Query Frame = 1
Query:   16 VFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVR-KLNSSAWAFLRPFTPLMWAXXXXXXXXXXXXXWILEHRLNDEFRGPPRKQIVTVLWFSFSTMFFAHRENTVSTLGRXXXXXXXXXXXXXTSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSFAENYLIEELSIPKSRLVALGSPEEYAIALENRT----VAAVVDERPYIDLFLSNHCQ 675
            VFDA VGD  I+ NR+  VDFT PY  SG+ +V P++  +  S+  F +P TP +W              WILEHR+N EF GPP+ QI T+ WF+FS M FA RE  +S   R             T SYTASL+S+LT QQL+     I  ++     V YQ  SF    L  E   P+SRLV   SPE+    L        V+A   E PY+ +FL  +C+
Sbjct:  514 VFDAVVGDTTILANRSSYVDFTLPYTTSGVGMVVPLKDNVARSSLIFFKPLTPGLWGMTLGSFFVVGFVVWILEHRVNSEFTGPPQYQISTMFWFAFSIMVFAPRERVMSFTARVVVITWYFIVLVLTQSYTASLSSLLTTQQLNPTETSIKNVLAKGGPVAYQRDSFVLGKL-RESGFPESRLVPFTSPEKCEELLNKGPSKGGVSAAFMEVPYVRVFLGQYCK 737          
BLAST of BQ623467 vs. ExPASy Swiss-Prot
Match: GLR13_ARATH (Glutamate receptor 1.3 OS=Arabidopsis thaliana GN=GLR1.3 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 3.989e-34
Identity = 84/217 (38.71%), Postives = 115/217 (53.00%), Query Frame = 1
Query:   19 FDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAXXXXXXXXXXXXXWILEHRLNDEFRGPPRKQIVTVLWFSFSTMFFAHRENTVSTLGRXXXXXXXXXXXXXTSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSNH 669
            +DAAVGDI I +NR+  VDFT P+ E GL +VA   +   S W F +P TP +W              W++E   N EF+G   +QI  VLWF FST+ +AHRE     L R             T+SYTA+LTS++TVQQ+           ++ D VG+  GS   N  +   S+   R + L S  +YA AL N+TV+ VVDE PY+ + L  +
Sbjct:  511 YDAAVGDITITSNRSTYVDFTLPFTEMGLGIVAVKER---SMWVFFQPLTPDLWITSAFFFVLTGVIVWLIERAENKEFQGSWPQQIGVVLWFGFSTLVYAHREKLKHNLSRFVVTVWVFAVLILTASYTATLTSMMTVQQI--------RFNSNEDYVGHLSGSLIANVALTSSSLRAMRSLGLNSAADYAQALLNKTVSFVVDELPYLKVVLGEN 716          
BLAST of BQ623467 vs. ExPASy Swiss-Prot
Match: GLR22_ARATH (Glutamate receptor 2.2 OS=Arabidopsis thaliana GN=GLR2.2 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.161e-33
Identity = 85/223 (38.12%), Postives = 118/223 (52.91%), Query Frame = 1
Query:   19 FDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVR-KLNSSAWAFLRPFTPLMWAXXXXXXXXXXXXXWILEHRLNDEFRGPPRKQIVTVLWFSFSTMFFAHRENTVSTLGRXXXXXXXXXXXXXTSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSFAENYLIEELSIPKSRLVALGSPEEYAIAL----ENRTVAAVVDERPYIDLFLSNHC 672
            FDA VGD  I+ NR+  VDFT P+++SG+ ++ P++ ++    ++FL+P +  +W              W LEHR+N +FRGP   Q  T+ WF+FSTM FA RE  +S   R             T SYTASL S+LT QQL+  I  + +L+   + VGYQ  SF    L  E   P+S LV   + EE    L    +N  VAA     PY+ LFL  +C
Sbjct:  530 FDAVVGDTTILANRSSFVDFTLPFMKSGVGLIVPLKDEVKRDKFSFLKPLSIELWLTTLVFFFLVGISVWTLEHRVNSDFRGPANYQASTIFWFAFSTMVFAPRERVLSFGARSLVVTWYFVLLVLTQSYTASLASLLTSQQLNPTITSMSSLLHRGETVGYQRTSFILGKL-NETGFPQSSLVPFDTAEECDELLKKGPKNGGVAAAFLGTPYVRLFLGQYC 751          
BLAST of BQ623467 vs. ExPASy Swiss-Prot
Match: GLR12_ARATH (Glutamate receptor 1.2 OS=Arabidopsis thaliana GN=GLR1.2 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.586e-33
Identity = 80/217 (36.87%), Postives = 114/217 (52.53%), Query Frame = 1
Query:   19 FDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAXXXXXXXXXXXXXWILEHRLNDEFRGPPRKQIVTVLWFSFSTMFFAHRENTVSTLGRXXXXXXXXXXXXXTSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSNH 669
            +DAAVGDI I ++R+  VDFT PY E GL +VA   +   S W F +P TP +W              W++E   N EF+G   +QI  V+WF FST+ +AHRE     L R              +SYTA+LTS++TVQQ+            + D VG+  GS   N  +   S+   RL+ L + E+YA AL N++V+ +V E PY+ + L  +
Sbjct:  514 YDAAVGDITITSDRSMYVDFTLPYTEMGLGIVAAKER---SMWVFFQPLTPNLWITSAAFFVLTGIIVWLIERAENKEFQGSWPQQIGVVIWFGFSTLVYAHREKLQHNLSRFVVTVWVFAVLILVTSYTATLTSMMTVQQI--------RFNANEDYVGHLSGSLIANAALTNSSLRAMRLLGLNTSEDYAQALMNKSVSYIVSELPYLKILLGEN 719          
BLAST of BQ623467 vs. ExPASy Swiss-Prot
Match: GLR25_ARATH (Glutamate receptor 2.5 OS=Arabidopsis thaliana GN=GLR2.5 PE=1 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 7.524e-33
Identity = 85/230 (36.96%), Postives = 120/230 (52.17%), Query Frame = 1
Query:    1 DIIL*VFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRK-LNSSAWAFLRPFTPLMWAXXXXXXXXXXXXXWILEHRLNDEFRGPPR-KQIVTVLWFSFSTMFFAHRENTVSTLGRXXXXXXXXXXXXXTSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSFAENYLIEELSIPKSRLVALGSPEE----YAIALENRTVAAVVDERPYIDLFLSNHC 672
            ++ L  FD AVGD  I+ NR+  VDF  PY E+G+V + PV+       W FL+P T  +W              WI E++ ++EFR      +I +V +FSFST+FFAHR  + S   R             T SYTA+LTS+LTVQ+L   ++ +D L  S   +GYQ GSF    L +++   +SRL    SPEE    +     N  + A  DE  YI LF++ +C
Sbjct:  528 NVFLGEFDGAVGDTTILANRSHYVDFALPYSETGIVFLVPVKDGKEKGEWVFLKPLTKELWLVTAASFLYIGIMVWIFEYQADEEFREQMIIDKISSVFYFSFSTLFFAHRRPSESFFTRVLVVVWCFVLLILTQSYTATLTSMLTVQELRPTVRHMDDLRKSGVNIGYQTGSFTFERL-KQMRFDESRLKTYNSPEEMRELFLHKSSNGGIDAAFDEVAYIKLFMAKYC 756          
BLAST of BQ623467 vs. ExPASy Swiss-Prot
Match: GLR21_ARATH (Glutamate receptor 2.1 OS=Arabidopsis thaliana GN=GLR2.1 PE=2 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 6.369e-32
Identity = 83/223 (37.22%), Postives = 115/223 (51.57%), Query Frame = 1
Query:   19 FDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVR-KLNSSAWAFLRPFTPLMWAXXXXXXXXXXXXXWILEHRLNDEFRGPPRKQIVTVLWFSFSTMFFAHRENTVSTLGRXXXXXXXXXXXXXTSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSFAENYLIEELSIPKSRLVALGSPEEYAIALENRT----VAAVVDERPYIDLFLSNHC 672
            +DA V D  I +NR+  VDF+ PY  SG+ +V PV+  +  S+  FL P T  +W              W+LEHR+N +F GP + Q+ T+ WFSFS M FA RE  +S   R             T SYTASL S+LT Q L   +  I++L+   + VGYQ  SF    L  +    ++ LV+ GSPE     L        V+AV+ E PY+ +FL  +C
Sbjct:  524 YDAVVADTTISSNRSMYVDFSLPYTPSGVGLVVPVKDSVRRSSTIFLMPLTLALWLISLLSFFIIGLVVWVLEHRVNPDFDGPGQYQLSTIFWFSFSIMVFAPRERVLSFWARVVVIIWYFLVLVLTQSYTASLASLLTTQHLHPTVTNINSLLAKGESVGYQ-SSFILGRL-RDSGFSEASLVSYGSPEHCDALLSKGQAEGGVSAVLMEVPYVRIFLGQYC 744          
BLAST of BQ623467 vs. ExPASy Swiss-Prot
Match: GLR26_ARATH (Glutamate receptor 2.6 OS=Arabidopsis thaliana GN=GLR2.6 PE=2 SV=2)

HSP 1 Score: 136.732 bits (343), Expect = 1.086e-31
Identity = 82/229 (35.81%), Postives = 118/229 (51.53%), Query Frame = 1
Query:    4 IIL*VFDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVR-KLNSSAWAFLRPFTPLMWAXXXXXXXXXXXXXWILEHRLNDEFRGPPR-KQIVTVLWFSFSTMFFAHRENTVSTLGRXXXXXXXXXXXXXTSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSFAENYLIEELSIPKSRLVALGSPEE----YAIALENRTVAAVVDERPYIDLFLSNHC 672
            + L  FD AVGD  I+ NR+  VDF  PY E+G+VVV PV+ +     W FL+P T  +W              WI E++ + +FR      +I  V +FSFST+FFAH   + S   R             T SYTA+LTS+LTVQ+L   ++ +D L  S   +GYQ GSF    L +++   +SRL    +P+E    +     N  + A  DE  Y+ LF++ +C
Sbjct:  533 VFLGEFDGAVGDTTILANRSTYVDFALPYSETGIVVVVPVKDEREKGKWVFLKPLTRELWFLTAASFLYIGIMVWIFEYQASGDFRKQSIINKISNVFYFSFSTLFFAHMRPSESIFTRVLVVVWCFVLLILTQSYTATLTSMLTVQELRPTVRHMDDLRNSGVNIGYQTGSFTFERL-KQMGYKESRLKTYDTPQEMHELFLKKSSNGGIDAAFDEVAYVKLFMAKYC 760          
BLAST of BQ623467 vs. ExPASy Swiss-Prot
Match: GLR14_ARATH (Glutamate receptor 1.4 OS=Arabidopsis thaliana GN=GLR1.4 PE=2 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 9.197e-31
Identity = 76/217 (35.02%), Postives = 112/217 (51.61%), Query Frame = 1
Query:   19 FDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAXXXXXXXXXXXXXWILEHRLNDEFRGPPRKQIVTVLWFSFSTMFFAHRENTVSTLGRXXXXXXXXXXXXXTSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSNH 669
            +DAAVGDI I  NR+  VDFT P+ + GL VV    K   S W   +P T  +W              W++E   N +F+G   +QI T+L F FST+ FAHRE     + R             TS+YTA+LTS++TVQQ+          + SN+ +G+   S A N + +  +    R   L + +++  AL N T++ +VDE PY+ LF++ H
Sbjct:  522 YDAAVGDITITDNRSLYVDFTLPFTDMGLAVVTAKDK---SMWIIFKPLTLSLWLTIASFFILTGAIVWLIERHDNADFQGSCFQQIGTLLCFGFSTLVFAHRERLQHNMSRFVVIVWIFAVLILTSNYTATLTSVMTVQQIRG--------LKSNENIGFFSASIAANVVNDNPTFQGPRYKGLKTADDFTNALRNGTISFIVDEVPYVKLFVAKH 727          
BLAST of BQ623467 vs. ExPASy Swiss-Prot
Match: GLR23_ARATH (Glutamate receptor 2.3 OS=Arabidopsis thaliana GN=GLR2.3 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.959e-29
Identity = 80/223 (35.87%), Postives = 112/223 (50.22%), Query Frame = 1
Query:   19 FDAAVGDIAIVTNRTKAVDFTQPYIESGL-VVVAPVRKLNSSAWAFLRPFTPLMWAXXXXXXXXXXXXXWILEHRLNDEFRGPPRKQIVTVLWFSFSTMFFAHRENTVSTLGRXXXXXXXXXXXXXTSSYTASLTSILTVQQLSSPIKGIDTLMTSNDRVGYQVGSFAENYLIEELSIPKSRLVALGSPEEYAIAL----ENRTVAAVVDERPYIDLFLSNHC 672
            +DA VGD  I+ NR+  VDFT P+I+SG+ ++V     +      F++P +  +W              W+LE++ N +F GPPR Q  T+ WF+FSTM FA RE   S   R             T SYTASL S+LT Q+L+  I  + +L+   + VGYQ  SF    L +E   P+S LV   + EE    L    +   V+    E PY+ LFL   C
Sbjct:  530 YDAVVGDTTILVNRSSYVDFTFPFIKSGVGLIVEMTDPVKRDYILFMKPLSWKLWLTSFISFFLVGCTVWVLEYKRNPDFSGPPRFQASTICWFAFSTMVFAPRERVFSFWARALVIAWYFLVLVLTQSYTASLASLLTSQKLNPTITSMSSLLEKGETVGYQRTSFILGKL-KERGFPQSSLVPFDTAEECDELLSKGPKKGGVSGAFLEIPYLRLFLGQFC 751          
The following BLAST results are available for this feature:
BLAST of BQ623467 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
GLR27_ARATH2.670e-3840.55Glutamate receptor 2.7 OS=Arabidopsis thaliana GN=... [more]
GLR24_ARATH5.567e-3640.00Glutamate receptor 2.4 OS=Arabidopsis thaliana GN=... [more]
GLR13_ARATH3.989e-3438.71Glutamate receptor 1.3 OS=Arabidopsis thaliana GN=... [more]
GLR22_ARATH1.161e-3338.12Glutamate receptor 2.2 OS=Arabidopsis thaliana GN=... [more]
GLR12_ARATH2.586e-3336.87Glutamate receptor 1.2 OS=Arabidopsis thaliana GN=... [more]
GLR25_ARATH7.524e-3336.96Glutamate receptor 2.5 OS=Arabidopsis thaliana GN=... [more]
GLR21_ARATH6.369e-3237.22Glutamate receptor 2.1 OS=Arabidopsis thaliana GN=... [more]
GLR26_ARATH1.086e-3135.81Glutamate receptor 2.6 OS=Arabidopsis thaliana GN=... [more]
GLR14_ARATH9.197e-3135.02Glutamate receptor 1.4 OS=Arabidopsis thaliana GN=... [more]
GLR23_ARATH2.959e-2935.87Glutamate receptor 2.3 OS=Arabidopsis thaliana GN=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00558 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00558 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623467 ID=BQ623467; Name=BQ623467; organism=Citrus sinensis; type=EST; length=684bp
GATATTATTTTGTAGGTTTTTGATGCTGCAGTGGGTGACATTGCAATCGT
AACGAACCGAACAAAGGCTGTCGATTTCACCCAGCCGTATATAGAGTCGG
GACTGGTTGTGGTGGCCCCTGTCAGGAAGTTGAATTCAAGTGCTTGGGCA
TTCTTGCGGCCCTTTACTCCATTGATGTGGGCAGTCACAGGAGTATTTTT
CCTTGTTGTTGGAACAGTTGTTTGGATCCTTGAACATAGATTAAATGATG
AATTCAGAGGGCCTCCTAGAAAACAGATTGTCACAGTTCTATGGTTTAGC
TTTTCTACTATGTTTTTTGCCCATAGAGAAAATACAGTGAGCACACTTGG
TCGTGTTGTGCTTATCATCTGGCTCTTTGTTGTTCTTATAATTACCTCAA
GCTATACTGCAAGCCTGACATCAATCCTCACAGTGCAACAGCTTTCCTCA
CCCATCAAAGGAATTGATACCTTGATGACGAGTAATGATCGTGTAGGATA
CCAAGTTGGGTCCTTTGCTGAAAACTATCTGATTGAGGAACTCAGCATTC
CAAAATCTAGACTTGTTGCTCTTGGCTCTCCAGAAGAATATGCGATTGCC
CTAGAAAATAGAACTGTTGCAGCTGTCGTCGATGAAAGACCATACATAGA
TCTGTTCCTCTCAAACCATTGCCAGTTTTCAGTT
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