BQ623467

Overview
NameBQ623467
Unique NameBQ623467
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length684
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig24 contig Csv1_Contig24:1..684. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623467 vs. ExPASy Swiss-Prot
Match: GLR11_ARATH (Glutamate receptor 1.1 OS=Arabidopsis thaliana GN=GLR1.1 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.138e-23
Identity = 67/221 (30.32%), Postives = 103/221 (46.61%), Query Frame = 1 
Query:   19 FDAAVGDIAIVTNRTKAVDFTQPYIESGLVVVAPVRKLNSSAWAFLRPFTPLMWAXXXXXXXXXXXXXWILEHRLNDEFRGPPRKQIVTVLWFSFSTMFFAHRENTVSTLGRXXXXXXXXXXXXXTSSYTASLTSILTVQQL----SSPIKGIDTLMTSNDRVGYQVGSFAENYLIEELSIPKSRLVALGSPEEYAIALENRTVAAVVDERPYIDLFLSNH 669
            +DAAVGDI I +NR+  VDFT PY + G+ ++  V+K +   W F  PF   +W              W++E  +N EF+G   +Q+  +LWF FST+ FAHRE       R             TSSY+A+LTS  T+ ++         G  T MT                         ++L ++ + E YA  L + T+  V++E PY+ + + N+
Sbjct:  492 YDAAVGDITITSNRSLYVDFTLPYTDIGIGILT-VKKKSQGMWTFFDPFEKSLWLASGAFFVLTGIVVWLVERSVNPEFQGSWGQQLSMMLWFGFSTIVFAHREKLQKMSSRFLVIVWVFVVLILTSSYSANLTSTKTISRMQLNHQMVFGGSTTSMT-------------------------AKLGSINAVEAYAQLLRDGTLNHVINEIPYLSILIGNY 686
The following BLAST results are available for this feature:
BLAST of BQ623467 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
GLR11_ARATH4.138e-2330.32Glutamate receptor 1.1 OS=Arabidopsis thaliana GN=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00558 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00558 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623467 ID=BQ623467; Name=BQ623467; organism=Citrus sinensis; type=EST; length=684bp
GATATTATTTTGTAGGTTTTTGATGCTGCAGTGGGTGACATTGCAATCGT
AACGAACCGAACAAAGGCTGTCGATTTCACCCAGCCGTATATAGAGTCGG
GACTGGTTGTGGTGGCCCCTGTCAGGAAGTTGAATTCAAGTGCTTGGGCA
TTCTTGCGGCCCTTTACTCCATTGATGTGGGCAGTCACAGGAGTATTTTT
CCTTGTTGTTGGAACAGTTGTTTGGATCCTTGAACATAGATTAAATGATG
AATTCAGAGGGCCTCCTAGAAAACAGATTGTCACAGTTCTATGGTTTAGC
TTTTCTACTATGTTTTTTGCCCATAGAGAAAATACAGTGAGCACACTTGG
TCGTGTTGTGCTTATCATCTGGCTCTTTGTTGTTCTTATAATTACCTCAA
GCTATACTGCAAGCCTGACATCAATCCTCACAGTGCAACAGCTTTCCTCA
CCCATCAAAGGAATTGATACCTTGATGACGAGTAATGATCGTGTAGGATA
CCAAGTTGGGTCCTTTGCTGAAAACTATCTGATTGAGGAACTCAGCATTC
CAAAATCTAGACTTGTTGCTCTTGGCTCTCCAGAAGAATATGCGATTGCC
CTAGAAAATAGAACTGTTGCAGCTGTCGTCGATGAAAGACCATACATAGA
TCTGTTCCTCTCAAACCATTGCCAGTTTTCAGTT
back to top