BQ623476

Overview
NameBQ623476
Unique NameBQ623476
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length490
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623476 vs. ExPASy Swiss-Prot
Match: RL101_ORYSJ (60S ribosomal protein L10-1 OS=Oryza sativa subsp. japonica GN=SC34 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.083e-37
Identity = 74/97 (76.29%), Postives = 86/97 (88.66%), Query Frame = 3
Query:   18 FGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPWKSF 308
            FGKPQGTCARV IGQVLLSVRCK+SN+ HA+EALRRAKFKFPGRQKII SRKWGFTKF+R +Y++ K+E RI+ DGVNA+LLG HG LA+R P K+F
Sbjct:  119 FGKPQGTCARVDIGQVLLSVRCKESNAKHAEEALRRAKFKFPGRQKIIHSRKWGFTKFTREEYVKLKAEGRIMSDGVNAQLLGSHGRLAKRAPGKAF 215          
BLAST of BQ623476 vs. ExPASy Swiss-Prot
Match: RL101_ORYSI (60S ribosomal protein L10-1 OS=Oryza sativa subsp. indica GN=SC34 PE=2 SV=2)

HSP 1 Score: 155.606 bits (392), Expect = 1.083e-37
Identity = 74/97 (76.29%), Postives = 86/97 (88.66%), Query Frame = 3
Query:   18 FGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPWKSF 308
            FGKPQGTCARV IGQVLLSVRCK+SN+ HA+EALRRAKFKFPGRQKII SRKWGFTKF+R +Y++ K+E RI+ DGVNA+LLG HG LA+R P K+F
Sbjct:  119 FGKPQGTCARVDIGQVLLSVRCKESNAKHAEEALRRAKFKFPGRQKIIHSRKWGFTKFTREEYVKLKAEGRIMSDGVNAQLLGSHGRLAKRAPGKAF 215          
BLAST of BQ623476 vs. ExPASy Swiss-Prot
Match: RL103_ARATH (60S ribosomal protein L10-3 OS=Arabidopsis thaliana GN=RPL10C PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 1.415e-37
Identity = 75/97 (77.32%), Postives = 83/97 (85.57%), Query Frame = 3
Query:   18 FGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQRQPWKSF 308
            FGK  GTCARVAIGQVLLSVRCKD++  HAQEALRRAKFKFPGRQKIIVSRKWGFTKF+RA+Y + ++  RIVPDGVNAK L  HGPLA RQP  +F
Sbjct:  119 FGKALGTCARVAIGQVLLSVRCKDNHGVHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRAEYTKLRAMKRIVPDGVNAKFLSNHGPLANRQPGSAF 215          
BLAST of BQ623476 vs. ExPASy Swiss-Prot
Match: RL10L_MACFA (60S ribosomal protein L10-like OS=Macaca fascicularis GN=RPL10L PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 1.374e-24
Identity = 52/88 (59.09%), Postives = 65/88 (73.86%), Query Frame = 3
Query:   18 FGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 281
            FGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    ++ R++PDG   K +  HGPL
Sbjct:  119 FGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAKKRLIPDGCGVKYVPSHGPL 206          
BLAST of BQ623476 vs. ExPASy Swiss-Prot
Match: RL10_SHEEP (60S ribosomal protein L10 OS=Ovis aries GN=RPL10 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.060e-24
Identity = 52/88 (59.09%), Postives = 64/88 (72.73%), Query Frame = 3
Query:   18 FGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 281
            FGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:  119 FGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFENMVAEKRLIPDGCGVKYIPNRGPL 206          
BLAST of BQ623476 vs. ExPASy Swiss-Prot
Match: RL10_PIG (60S ribosomal protein L10 OS=Sus scrofa GN=RPL10 PE=2 SV=3)

HSP 1 Score: 110.923 bits (276), Expect = 3.060e-24
Identity = 52/88 (59.09%), Postives = 64/88 (72.73%), Query Frame = 3
Query:   18 FGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 281
            FGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:  119 FGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFENMVAEKRLIPDGCGVKYIPNRGPL 206          
BLAST of BQ623476 vs. ExPASy Swiss-Prot
Match: RL10_BOVIN (60S ribosomal protein L10 OS=Bos taurus GN=RPL10 PE=2 SV=4)

HSP 1 Score: 110.923 bits (276), Expect = 3.060e-24
Identity = 52/88 (59.09%), Postives = 64/88 (72.73%), Query Frame = 3
Query:   18 FGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 281
            FGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:  119 FGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFENMVAEKRLIPDGCGVKYIPNRGPL 206          
BLAST of BQ623476 vs. ExPASy Swiss-Prot
Match: RL10_DROME (60S ribosomal protein L10 OS=Drosophila melanogaster GN=Qm PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 3.997e-24
Identity = 54/89 (60.67%), Postives = 62/89 (69.66%), Query Frame = 3
Query:   18 FGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLA 284
            FGKPQGT ARV IGQ ++SVR  D       EALRRAKFKFPGRQKI VS+KWGFTK+ R  Y   + +NR+ PDG N K    HGP+A
Sbjct:  119 FGKPQGTVARVRIGQPIMSVRSSDRYKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERERYEELRDDNRLEPDGCNVKYRPEHGPIA 207          
BLAST of BQ623476 vs. ExPASy Swiss-Prot
Match: RL10_RAT (60S ribosomal protein L10 OS=Rattus norvegicus GN=Rpl10 PE=1 SV=3)

HSP 1 Score: 110.153 bits (274), Expect = 5.220e-24
Identity = 52/88 (59.09%), Postives = 64/88 (72.73%), Query Frame = 3
Query:   18 FGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 281
            FGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:  119 FGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYIPNRGPL 206          
BLAST of BQ623476 vs. ExPASy Swiss-Prot
Match: RL10_PAPAN (60S ribosomal protein L10 OS=Papio anubis GN=RPL10 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 5.220e-24
Identity = 52/88 (59.09%), Postives = 64/88 (72.73%), Query Frame = 3
Query:   18 FGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 281
            FGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    +E R++PDG   K +   GPL
Sbjct:  119 FGKPQGTVARVHIGQVIMSIRTKLQNKEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAEKRLIPDGCGVKYIPNRGPL 206          
The following BLAST results are available for this feature:
BLAST of BQ623476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
RL101_ORYSJ1.083e-3776.2960S ribosomal protein L10-1 OS=Oryza sativa subsp.... [more]
RL101_ORYSI1.083e-3776.2960S ribosomal protein L10-1 OS=Oryza sativa subsp.... [more]
RL103_ARATH1.415e-3777.3260S ribosomal protein L10-3 OS=Arabidopsis thalian... [more]
RL10L_MACFA1.374e-2459.0960S ribosomal protein L10-like OS=Macaca fascicula... [more]
RL10_SHEEP3.060e-2459.0960S ribosomal protein L10 OS=Ovis aries GN=RPL10 P... [more]
RL10_PIG3.060e-2459.0960S ribosomal protein L10 OS=Sus scrofa GN=RPL10 P... [more]
RL10_BOVIN3.060e-2459.0960S ribosomal protein L10 OS=Bos taurus GN=RPL10 P... [more]
RL10_DROME3.997e-2460.6760S ribosomal protein L10 OS=Drosophila melanogast... [more]
RL10_RAT5.220e-2459.0960S ribosomal protein L10 OS=Rattus norvegicus GN=... [more]
RL10_PAPAN5.220e-2459.0960S ribosomal protein L10 OS=Papio anubis GN=RPL10... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00567 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00567 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623476 ID=BQ623476; Name=BQ623476; organism=Citrus sinensis; type=EST; length=490bp
TGGAATGAGGGGTGCCTTTTGGAAAGCCCCAAGGAACCTGTGCTCGTGTT
GCTATCGGGCAGGTCTTGCTTTCTGTCCGTTGCAAGGATAGTAACAGCCA
CCATGCTCAGGAGGCCCTTCGCCGTGCTAAGTTCAAGTTTCCTGGTCGTC
AAAAGATTATTGTCAGCAGGAAATGGGGATTTACCAAGTTCAGCCGTGCT
GATTATCTGCGGTGGAAGTCGGAGAACAGGATTGTCCCAGATGGTGTGAA
TGCCAAGCTTCTCGGATGTCATGGTCCTTTGGCTCAACGTCAACCCTGGA
AGAGCTTTCCTGGAAGCAACAACCTAAGATATTTACTGTCTCAAAATAGC
AGAGCTGGGTCTACTGTCTAGTTTATTATTTTCCATTTCGTACCTTTTCT
CAGTTGAACTGGATTTCTCAAGTTGAAGTGACATGTTTCTTTGGTTTAAC
TATGTGATCCTTGCAGTTGTTTTAGTGATTTGCAATTTGC
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