BQ623476

Overview
NameBQ623476
Unique NameBQ623476
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length490
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig242 contig Csv1_Contig242:391..879. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623476 vs. ExPASy Swiss-Prot
Match: RL10B_SCHPO (60S ribosomal protein L10-B OS=Schizosaccharomyces pombe GN=rpl10b PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 1.679e-22
Identity = 50/91 (54.95%), Postives = 67/91 (73.63%), Query Frame = 3
Query:   18 FGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQR 290
            FGKP G  ARV IGQVL+SVR KDS+   A EALRR ++KFPG+Q+IIVS+KWGF++++R +Y+  +S   I+PDG  AK L   G L ++
Sbjct:  119 FGKPNGLVARVNIGQVLMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKFLNKRGSLQEK 209          
BLAST of BQ623476 vs. ExPASy Swiss-Prot
Match: RL10A_SCHPO (60S ribosomal protein L10-A OS=Schizosaccharomyces pombe GN=rpl10a PE=2 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 2.193e-22
Identity = 49/91 (53.85%), Postives = 67/91 (73.63%), Query Frame = 3
Query:   18 FGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPLAQR 290
            FGKP G  ARV IGQ+L+SVR KDS+   A EALRR ++KFPG+Q+IIVS+KWGF++++R +Y+  +S   I+PDG  AK L   G L ++
Sbjct:  119 FGKPNGLVARVNIGQILMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKFLNKRGSLQEK 209          
BLAST of BQ623476 vs. ExPASy Swiss-Prot
Match: RL10_BOMMA (60S ribosomal protein L10 OS=Bombyx mandarina GN=RpL10 PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 4.136e-21
Identity = 50/88 (56.82%), Postives = 60/88 (68.18%), Query Frame = 3
Query:   18 FGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 281
            FGKPQGT ARV IGQ ++SVR  D       EALRRAKFKFPGRQKI VS+KWGFTK+ R ++ + + E R+  DG   +    HGPL
Sbjct:  119 FGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYERDEFEKLREEGRLANDGCIVQYRPEHGPL 206          
BLAST of BQ623476 vs. ExPASy Swiss-Prot
Match: RL10_YEAST (60S ribosomal protein L10 OS=Saccharomyces cerevisiae GN=RPL10 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.964e-19
Identity = 45/88 (51.14%), Postives = 57/88 (64.77%), Query Frame = 3
Query:   18 FGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 281
            +GKP G  ARV IGQ++ SVR KDSN     E LRRA++KFPG+QKII+S+KWGFT   R +YL+ +    +  DG   K L   G L
Sbjct:  119 WGKPHGLAARVDIGQIIFSVRTKDSNKDVVVEGLRRARYKFPGQQKIILSKKWGFTNLDRPEYLKKREAGEVKDDGAFVKFLSKKGSL 206          
BLAST of BQ623476 vs. ExPASy Swiss-Prot
Match: RL10_EUGGR (60S ribosomal protein L10 OS=Euglena gracilis GN=RPL10 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 8.925e-16
Identity = 41/88 (46.59%), Postives = 53/88 (60.23%), Query Frame = 3
Query:   18 FGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCHGPL 281
            FGKP G  ARV IGQ L+S+R K  +      AL+RA +KF GRQ I  S  WGFT+    +Y++WK E +   DGV+ K+L   G L
Sbjct:  119 FGKPNGLAARVRIGQPLMSIRVKPQHEAVVVAALKRASYKFAGRQVIAKSTMWGFTEIRSENYVKWKEEGKFRVDGVSTKILRNRGRL 206          
BLAST of BQ623476 vs. ExPASy Swiss-Prot
Match: RL10_ENCCU (60S ribosomal protein L10 OS=Encephalitozoon cuniculi GN=RPL10 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.584e-12
Identity = 38/76 (50.00%), Postives = 46/76 (60.53%), Query Frame = 3
Query:   18 FGKPQGTCARVAIGQVLLSVRCKDSNSHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDG 245
            FGKP G  ARV   Q +LS+R K+S    A EALRRAK KFPG QKI VS K+GFT     ++ +     RI+  G
Sbjct:  119 FGKPYGRAARVVFNQPILSIRTKESFRDAAVEALRRAKNKFPGHQKIQVSSKFGFTNMFSDEFNKLNESGRIILRG 194          
The following BLAST results are available for this feature:
BLAST of BQ623476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 36
Match NameE-valueIdentityDescription
RL10B_SCHPO1.679e-2254.9560S ribosomal protein L10-B OS=Schizosaccharomyces... [more]
RL10A_SCHPO2.193e-2253.8560S ribosomal protein L10-A OS=Schizosaccharomyces... [more]
RL10_BOMMA4.136e-2156.8260S ribosomal protein L10 OS=Bombyx mandarina GN=R... [more]
RL10_YEAST2.964e-1951.1460S ribosomal protein L10 OS=Saccharomyces cerevis... [more]
RL10_EUGGR8.925e-1646.5960S ribosomal protein L10 OS=Euglena gracilis GN=R... [more]
RL10_ENCCU4.584e-1250.0060S ribosomal protein L10 OS=Encephalitozoon cunic... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00567 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00567 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623476 ID=BQ623476; Name=BQ623476; organism=Citrus sinensis; type=EST; length=490bp
TGGAATGAGGGGTGCCTTTTGGAAAGCCCCAAGGAACCTGTGCTCGTGTT
GCTATCGGGCAGGTCTTGCTTTCTGTCCGTTGCAAGGATAGTAACAGCCA
CCATGCTCAGGAGGCCCTTCGCCGTGCTAAGTTCAAGTTTCCTGGTCGTC
AAAAGATTATTGTCAGCAGGAAATGGGGATTTACCAAGTTCAGCCGTGCT
GATTATCTGCGGTGGAAGTCGGAGAACAGGATTGTCCCAGATGGTGTGAA
TGCCAAGCTTCTCGGATGTCATGGTCCTTTGGCTCAACGTCAACCCTGGA
AGAGCTTTCCTGGAAGCAACAACCTAAGATATTTACTGTCTCAAAATAGC
AGAGCTGGGTCTACTGTCTAGTTTATTATTTTCCATTTCGTACCTTTTCT
CAGTTGAACTGGATTTCTCAAGTTGAAGTGACATGTTTCTTTGGTTTAAC
TATGTGATCCTTGCAGTTGTTTTAGTGATTTGCAATTTGC
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