BQ623499

Overview
NameBQ623499
Unique NameBQ623499
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length594
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623499 vs. ExPASy Swiss-Prot
Match: UBE2S_DICDI (Ubiquitin-conjugating enzyme E2 S OS=Dictyostelium discoideum GN=ube2s PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.722e-17
Identity = 41/119 (34.45%), Postives = 67/119 (56.30%), Query Frame = 2
Query:    5 EDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYA 361
            ED+ + +A + GP+ +PY GG F   +    D+P  PPK  F TK+FHPN++  G IC++ LK+ W+  L +  +LL+I  LL  PN +  L  + + +   +   Y   A+ +T  +A
Sbjct:   36 EDITNIEAVVTGPAGTPYEGGYFKARLILSSDFPRSPPKANFITKIFHPNVSKKGEICVNTLKKDWTEDLGLKHILLTIKCLLIVPNAESSLNEDASRLLLENYDDYCKHAKLFTSIHA 154          
BLAST of BQ623499 vs. ExPASy Swiss-Prot
Match: UBCX_PICAN (Ubiquitin-conjugating enzyme E2-21 kDa OS=Pichia angusta GN=PEX4 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.722e-17
Identity = 47/143 (32.87%), Postives = 71/143 (49.65%), Query Frame = 2
Query:    5 EDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRT----------------------KVFHPNIN-SNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK-SDKAKYESTARSWTQKYA 361
            + +F W A I GP  SP+   ++ + I  P +YP  PPK+ F                        K+ HPN+N   G ICLDIL+++WSPA T+   L++I  LL +P P  PL  ++A++ K  D   Y+     +  KY+
Sbjct:   39 DGLFRWSAVIRGPDQSPFEDALWKLEIDIPTNYPLDPPKIKFVVFGEEKIRQLQRKTSSGARKVCYKMPHPNVNFKTGEICLDILQQKWSPAWTLQSALVAIVVLLANPEPLSPLNIDMANLLKCDDTTAYKDLVHYYIAKYS 181          
BLAST of BQ623499 vs. ExPASy Swiss-Prot
Match: UB12L_ARATH (Probable NEDD8-conjugating enzyme Ubc12-like OS=Arabidopsis thaliana GN=RCE2 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 9.722e-17
Identity = 41/111 (36.94%), Postives = 65/111 (58.56%), Query Frame = 2
Query:    8 DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTAR 340
            D+ +++ TI  P +  Y  G F+ +      YP + PKV  +TKV+HPNI+  G++CL+IL+E W P L I+ V+  +  L T+PN +DPL  E A + + +   +E   R
Sbjct:   59 DLMNFEVTIK-PDEGYYLSGNFVFSFQVSNMYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLFHLFTEPNYEDPLNHEAAAVLRDNPKTFEYNVR 168          
BLAST of BQ623499 vs. ExPASy Swiss-Prot
Match: UBC3_YEAST (Ubiquitin-conjugating enzyme E2-34 kDa OS=Saccharomyces cerevisiae GN=CDC34 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 4.825e-16
Identity = 43/124 (34.68%), Postives = 65/124 (52.42%), Query Frame = 2
Query:    8 DMFHWQATIMGPS-DSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTAR 340
            ++F W   +M  + DS Y GG F   + FP D+PF PP+  F   ++HPN+  +G +C+ IL             E WSP  T+  VL+SI SLL DPN + P   + A  Y+ +  +Y+   +
Sbjct:   38 NIFTWNIGVMVLNEDSIYHGGFFKAQMRFPEDFPFSPPQFRFTPAIYHPNVYRDGRLCISILHQSGDPMTDEPDAETWSPVQTVESVLISIVSLLEDPNINSPANVDAAVDYRKNPEQYKQRVK 161          
BLAST of BQ623499 vs. ExPASy Swiss-Prot
Match: UBE2Z_XENTR (Ubiquitin-conjugating enzyme E2 Z OS=Xenopus tropicalis GN=ube2z PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 6.302e-16
Identity = 54/138 (39.13%), Postives = 69/138 (50.00%), Query Frame = 2
Query:    8 DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAF-----RTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG*RLLGYCR 391
            DM    A I GP D+PY GG FL     PPDYP  PP+V        T  F+PN   NG +CL IL       WSPA ++S VL+SI SL+T+ P  ++P   +  H    D   Y    R  T + A+   L G C+
Sbjct:   86 DMTKIHALITGPFDTPYEGGFFLFLFRCPPDYPIHPPRVKLMTTGNNTVRFNPNFYRNGKVCLSILGTWTGPAWSPAQSLSSVLISIQSLMTENPYHNEPGFEQERH--SGDSKNYNECIRHETIRVAVCEMLEGKCQ 221          
BLAST of BQ623499 vs. ExPASy Swiss-Prot
Match: UBE2Z_XENLA (Ubiquitin-conjugating enzyme E2 Z OS=Xenopus laevis GN=ube2z PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 6.302e-16
Identity = 54/138 (39.13%), Postives = 69/138 (50.00%), Query Frame = 2
Query:    8 DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAF-----RTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG*RLLGYCR 391
            DM    A I GP D+PY GG FL     PPDYP  PP+V        T  F+PN   NG +CL IL       WSPA ++S VL+SI SL+T+ P  ++P   +  H    D   Y    R  T + A+   L G C+
Sbjct:   86 DMTKIHALITGPFDTPYEGGFFLFLFRCPPDYPIHPPRVKLMTTGNNTVRFNPNFYRNGKVCLSILGTWTGPAWSPAQSLSSVLISIQSLMTENPYHNEPGFEQERH--SGDSKNYNECIRHETIRVAVCEMLEGKCQ 221          
BLAST of BQ623499 vs. ExPASy Swiss-Prot
Match: UBE2Z_RAT (Ubiquitin-conjugating enzyme E2 Z OS=Rattus norvegicus GN=Ube2z PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 8.231e-16
Identity = 54/137 (39.42%), Postives = 68/137 (49.64%), Query Frame = 2
Query:    8 DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAF-----RTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG*RLLGYC 388
            DM    A I GP D+PY GG FL     PPDYP  PP+V        T  F+PN   NG +CL IL       WSPA +IS VL+SI SL+T+ P  ++P   +  H    D   Y    R  T + A+   + G C
Sbjct:  129 DMTKIHALITGPFDTPYEGGFFLFVFRCPPDYPIHPPRVKLMTTGNNTVRFNPNFYRNGKVCLSILGTWTGPAWSPAQSISSVLISIQSLMTENPYHNEPGFEQERH--PGDSKNYNECIRHETIRVAVCDMMEGKC 263          
BLAST of BQ623499 vs. ExPASy Swiss-Prot
Match: UBE2Z_MOUSE (Ubiquitin-conjugating enzyme E2 Z OS=Mus musculus GN=Ube2z PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 8.231e-16
Identity = 54/137 (39.42%), Postives = 68/137 (49.64%), Query Frame = 2
Query:    8 DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAF-----RTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG*RLLGYC 388
            DM    A I GP D+PY GG FL     PPDYP  PP+V        T  F+PN   NG +CL IL       WSPA +IS VL+SI SL+T+ P  ++P   +  H    D   Y    R  T + A+   + G C
Sbjct:  129 DMTKIHALITGPFDTPYEGGFFLFVFRCPPDYPIHPPRVKLMTTGNNTVRFNPNFYRNGKVCLSILGTWTGPAWSPAQSISSVLISIQSLMTENPYHNEPGFEQERH--PGDSKNYNECIRHETIRVAVCDMMEGKC 263          
BLAST of BQ623499 vs. ExPASy Swiss-Prot
Match: UBE2Z_HUMAN (Ubiquitin-conjugating enzyme E2 Z OS=Homo sapiens GN=UBE2Z PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 8.231e-16
Identity = 54/137 (39.42%), Postives = 68/137 (49.64%), Query Frame = 2
Query:    8 DMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAF-----RTKVFHPNINSNGSICLDIL----KEQWSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAMG*RLLGYC 388
            DM    A I GP D+PY GG FL     PPDYP  PP+V        T  F+PN   NG +CL IL       WSPA +IS VL+SI SL+T+ P  ++P   +  H    D   Y    R  T + A+   + G C
Sbjct:  127 DMTKIHALITGPFDTPYEGGFFLFVFRCPPDYPIHPPRVKLMTTGNNTVRFNPNFYRNGKVCLSILGTWTGPAWSPAQSISSVLISIQSLMTENPYHNEPGFEQERH--PGDSKNYNECIRHETIRVAVCDMMEGKC 261          
BLAST of BQ623499 vs. ExPASy Swiss-Prot
Match: UBC4_MIMIV (Probable bifunctional E2/E3 enzyme R795 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R795 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.075e-15
Identity = 40/120 (33.33%), Postives = 63/120 (52.50%), Query Frame = 2
Query:    5 EDMFHWQATIMGPSDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYESTARSWTQKYAM 364
            +D+  W+    GP  +PY  G +L  I F  +YP   P + F T + H NIN+ G +C  IL   ++P + IS +L  I  LL +P+ +DPL   +A +Y      YE+    +  K+A+
Sbjct: 1160 QDISFWKIVFKGPDSTPYKNGTWLAYIQFTEEYPNIAPNIRFVTPIKHCNINNYGRVCHSILDRNYTPNVKISLILQCIYGLLLNPDVNDPLDTNLAMIYYDANGLYEAQIIDYVNKFAL 1279          
The following BLAST results are available for this feature:
BLAST of BQ623499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 250
Match NameE-valueIdentityDescription
UBE2S_DICDI9.722e-1734.45Ubiquitin-conjugating enzyme E2 S OS=Dictyostelium... [more]
UBCX_PICAN9.722e-1732.87Ubiquitin-conjugating enzyme E2-21 kDa OS=Pichia a... [more]
UB12L_ARATH9.722e-1736.94Probable NEDD8-conjugating enzyme Ubc12-like OS=Ar... [more]
UBC3_YEAST4.825e-1634.68Ubiquitin-conjugating enzyme E2-34 kDa OS=Saccharo... [more]
UBE2Z_XENTR6.302e-1639.13Ubiquitin-conjugating enzyme E2 Z OS=Xenopus tropi... [more]
UBE2Z_XENLA6.302e-1639.13Ubiquitin-conjugating enzyme E2 Z OS=Xenopus laevi... [more]
UBE2Z_RAT8.231e-1639.42Ubiquitin-conjugating enzyme E2 Z OS=Rattus norveg... [more]
UBE2Z_MOUSE8.231e-1639.42Ubiquitin-conjugating enzyme E2 Z OS=Mus musculus ... [more]
UBE2Z_HUMAN8.231e-1639.42Ubiquitin-conjugating enzyme E2 Z OS=Homo sapiens ... [more]
UBC4_MIMIV1.075e-1533.33Probable bifunctional E2/E3 enzyme R795 OS=Acantha... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00590 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00590 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623499 ID=BQ623499; Name=BQ623499; organism=Citrus sinensis; type=EST; length=594bp
GGCTGAAGACATGTTCCACTGGCAAGCAACAATTATGGGCCCTTCTGATA
GCCCATATGCAGGAGGTGTATTTTTAGTTACCATTCATTTTCCTCCTGAT
TATCCTTTCAAGCCCCCAAAGGTTGCTTTTAGGACCAAGGTCTTCCACCC
GAACATCAACAGCAATGGAAGCATCTGTCTTGATATCCTTAAAGAACAGT
GGAGTCCAGCGCTTACCATTTCAAAGGTCCTGCTCTCTATCTGCTCCTTG
CTTACTGATCCAAATCCCGACGACCCTCTTGTACCGGAGATTGCCCACAT
GTACAAGTCCGACAAGGCCAAATATGAATCCACGGCCAGGAGCTGGACAC
AGAAGTATGCCATGGGATGAAGGTTGTTAGGATATTGCAGAAAAAGGAGC
ATTTATTGAAATATGTTGTGTGTGTTGTCTATCTATTTTCTTTAACTTGC
TTTGGGGAGGGCAGACGTTGGTGTTTTAGAATGGTGTTGGGAGGAGTTGC
AAGGGCGGGACGTTCTTATGTTAATGGTGAATGTTTGTGTTTGAAGCTTC
TTCGATGGAACGTAGTTATGGGCCTAAAAAAACGTAACACACAA
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