BQ623502

Overview
NameBQ623502
Unique NameBQ623502
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7050 contig Csv1_Contig7050:355..973. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623502 vs. ExPASy Swiss-Prot
Match: ACSF_PROM4 (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Prochlorococcus marinus (strain MIT 9211) GN=acsF PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 8.047e-41
Identity = 77/159 (48.43%), Postives = 105/159 (66.04%), Query Frame = 2
Query:   89 RQIFVEFLERSCTAEFSGFLLYKELGRRLKKTN-PVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFF 562
            + ++  +L RS  +EFSGFLL+KE+  R KK   P + + F  ++RDEARHAGFL + L +    +DL  L K R  TFF   ++ Y+ YLSEKIGYWRYI I RHLKA+P+  C P+F +FE WCQDENRHGD  + +M+  P     ++ K+ +RFF
Sbjct:   85 KSVYESYLVRSVVSEFSGFLLFKEISNRFKKAKRPELGQFFQFLARDEARHAGFLGRALKEEGINIDLPNLPKKRAATFFPLSWVLYSLYLSEKIGYWRYILINRHLKAHPDKACAPLFDFFEPWCQDENRHGDCINMMMRCWPGMTKGFRGKILSRFF 243          
BLAST of BQ623502 vs. ExPASy Swiss-Prot
Match: ACSF_PROMA (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Prochlorococcus marinus GN=acsF PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.051e-40
Identity = 80/173 (46.24%), Postives = 111/173 (64.16%), Query Frame = 2
Query:   47 RSSRKPADKMQGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTN-PVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFF 562
            ++S +  D++    + ++  +L RS  +EFSGFLL+KE+  R KK     + + F+ ++RDEARHAGFL + L      +DL  L K R  TFF   ++ Y+ YLSEKIGYWRYI I RHLKANP+  C P+F +FE WCQDENRHGD  + +M+  P     ++ KL +RFF
Sbjct:   69 KASLERLDELSPEDKAVYESYLVRSVVSEFSGFLLFKEISNRFKKAGRQELGQFFTFLARDEARHAGFLGRALKTEGINVDLPNLPKKRAATFFPLSWVLYSLYLSEKIGYWRYILINRHLKANPDKVCAPLFDFFEPWCQDENRHGDCINLMMRCWPGMTKGFRGKLLSRFF 241          
BLAST of BQ623502 vs. ExPASy Swiss-Prot
Match: ACSF_PROMM (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Prochlorococcus marinus (strain MIT 9313) GN=acsF PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 9.837e-39
Identity = 78/165 (47.27%), Postives = 104/165 (63.03%), Query Frame = 2
Query:   89 RQIFVEFLERSCTAEFSGFLLYKELGRRLKKTN-PVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSGYV 580
            + I+  +L RS  +EFSGFLL+KE+  R KK     + + F+ ++RDEARHAGFL + L      +DL  L   R  TFF   ++ Y+ YLSEKIGYWRYI I RHL  NPE  C P+F +FE WCQDENRHGD  + +M+  P     ++ KL +RFF  S ++
Sbjct:   85 KAIYESYLVRSVVSEFSGFLLFKEISNRFKKAGRQELGQFFTFLARDEARHAGFLGRALKAEGINVDLPNLGNKRAATFFPLSWVLYSLYLSEKIGYWRYILINRHLNDNPEKVCAPLFDFFEPWCQDENRHGDCINLMMRCWPGMTKGFRGKLLSRFFLWSVFL 249          
BLAST of BQ623502 vs. ExPASy Swiss-Prot
Match: ACSF_PROM3 (Magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase OS=Prochlorococcus marinus (strain MIT 9303) GN=acsF PE=3 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.285e-38
Identity = 78/165 (47.27%), Postives = 104/165 (63.03%), Query Frame = 2
Query:   89 RQIFVEFLERSCTAEFSGFLLYKELGRRLKKTN-PVVAEIFSLMSRDEARHAGFLNKGLSDFNYALDLGFLTKARKYTFFKPKFIFYATYLSEKIGYWRYITIYRHLKANPEFQCYPIFKYFENWCQDENRHGDFFSALMKAQPQFLNDWKAKLWARFFCLSGYV 580
            + I+  +L RS  +EFSGFLL+KE+  R KK     + + F+ ++RDEARHAGFL + L      +DL  L   R  TFF   ++ Y+ YLSEKIGYWRYI I RHL  NPE  C P+F +FE WCQDENRHGD  + +M+  P     ++ KL +RFF  S ++
Sbjct:   85 KAIYESYLVRSVVSEFSGFLLFKEISNRFKKAGRQELGQFFTFLARDEARHAGFLGRALKAEGINVDLPNLGNKRAPTFFPLSWVLYSLYLSEKIGYWRYILINRHLNDNPEKVCAPLFDFFEPWCQDENRHGDCINLMMRCWPGMTKGFRGKLLSRFFLWSVFL 249          
The following BLAST results are available for this feature:
BLAST of BQ623502 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
ACSF_PROM48.047e-4148.43Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
ACSF_PROMA1.051e-4046.24Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
ACSF_PROMM9.837e-3947.27Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]
ACSF_PROM31.285e-3847.27Magnesium-protoporphyrin IX monomethyl ester [oxid... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00593 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00593 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623502 ID=BQ623502; Name=BQ623502; organism=Citrus sinensis; type=EST; length=619bp
CAAGAATTCAAGACTGATTATAACCAGACTCACTTTGTGAGGAACAAGGA
GTTCAAGGAAGCCTGCTGACAAGATGCAAGGCCCTCTCAGGCAGATCTTT
GTTGAGTTCTTGGAGAGGTCTTGCACTGCTGAGTTCTCTGGTTTCCTTCT
TTACAAAGAGCTCGGAAGGAGACTCAAGAAAACCAACCCAGTGGTAGCTG
AGATTTTCTCTCTGATGTCCAGGGATGAAGCCAGGCATGCCGGGTTTCTG
AACAAGGGGCTATCTGATTTCAATTATGCATTGGACTTGGGCTTCCTGAC
AAAAGCTAGGAAATACACATTTTTCAAGCCAAAGTTTATCTTTTATGCCA
CATATTTATCTGAGAAGATTGGATACTGGAGATACATTACCATATACAGA
CATCTCAAGGCCAACCCTGAGTTCCAATGTTATCCCATTTTCAAGTATTT
TGAGAACTGGTGCCAGGATGAGAACCGTCACGGTGATTTCTTCTCAGCCT
TGATGAAGGCACAACCCCAGTTCCTCAATGACTGGAAGGCAAAGTTGTGG
GCCCGATTTTTCTGCCTCTCGGGGTATGTACAATGTATCTCAATGACTGC
CAGCGTACTGCTTTCTATG
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