BQ623505

Overview
NameBQ623505
Unique NameBQ623505
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length523
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623505 vs. ExPASy Swiss-Prot
Match: GL110_ARATH (Germin-like protein subfamily 1 member 10 OS=Arabidopsis thaliana GN=At5g38930 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 6.162e-24
Identity = 55/111 (49.55%), Postives = 69/111 (62.16%), Query Frame = 3
Query:    9 LFRLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTN--NTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTIFDATPPVPNEVLTKSFRV 335
            L R+D  V G NPPHTHPR TE  +V  GTLLVG VT+N  N  F+KVL  G VF+ P  L+HFQ N+G  PA      ++QNPGV     T+F A P +   +L K+F+V
Sbjct:   99 LVRIDYAVDGQNPPHTHPRATEILVVELGTLLVGFVTSNPDNRLFTKVLNEGDVFVFPEGLIHFQANIGKAPAVAFAALSSQNPGVITIAPTVFGANPAINPNILAKAFQV 209          
BLAST of BQ623505 vs. ExPASy Swiss-Prot
Match: GL13_ORYSJ (Germin-like protein 1-3 OS=Oryza sativa subsp. japonica GN=GER8 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.341e-23
Identity = 51/107 (47.66%), Postives = 67/107 (62.62%), Query Frame = 3
Query:   15 RLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTIFDATPPVPNEVLTKSFRV 335
            R+D    G+NPPHTHPR TE   V  G+L VG VTT N  F++ +  G+VF+ PR LVHFQ N GN PA  I   N+Q PG       +F A PP+P++ L ++F+V
Sbjct:  100 RIDYAPWGLNPPHTHPRATEIIFVVEGSLDVGFVTTANKLFTRTVCKGEVFVFPRGLVHFQKNNGNTPAFAIAALNSQLPGTQSIAAALFGAAPPLPSDTLARAFQV 206          
BLAST of BQ623505 vs. ExPASy Swiss-Prot
Match: GL12_ORYSJ (Germin-like protein 1-2 OS=Oryza sativa subsp. japonica GN=Os01g0705100 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 2.341e-23
Identity = 50/110 (45.45%), Postives = 73/110 (66.36%), Query Frame = 3
Query:   15 RLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTIFDATPPVPNEVLTKSFRVGDD 344
            R DL  GG+NPPH+HPR +E  +V  G ++VG  T  N  FSKV+   ++F++PR L HFQLNVG   A+F+ +F++Q+PG+      +F   P +P EVL K+F +G+D
Sbjct:  103 RTDLAPGGLNPPHSHPRASELVLVLSGEVMVGFTTAANRLFSKVVREKELFVVPRGLQHFQLNVGAGNASFVAMFDSQSPGLVTPTFALFATQPAMPMEVLAKTFLMGED 212          
BLAST of BQ623505 vs. ExPASy Swiss-Prot
Match: GL38_ORYSJ (Germin-like protein 3-8 OS=Oryza sativa subsp. japonica GN=Os03g0804700 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.058e-23
Identity = 52/107 (48.60%), Postives = 70/107 (65.42%), Query Frame = 3
Query:   15 RLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTIFDATPPVPNEVLTKSFRV 335
            R+DL  GG+NP H+HPR TE   V  G +L G V+T   F+SKVL  G+ F++PR ++HFQ NVG   A  I  FN+Q PGV  +  T+F + P +P+ VL KSF+V
Sbjct:  107 RVDLAPGGVNPLHSHPRATELIHVVAGRVLAGFVSTAGEFYSKVLGEGETFVVPRGMIHFQYNVGGVAAQVITAFNSQMPGVVAAGSTLFGSDPEIPDAVLAKSFQV 213          
BLAST of BQ623505 vs. ExPASy Swiss-Prot
Match: GL83_ORYSJ (Germin-like protein 8-3 OS=Oryza sativa subsp. japonica GN=GER2 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 8.897e-23
Identity = 54/111 (48.65%), Postives = 73/111 (65.77%), Query Frame = 3
Query:    9 LFRLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTN-NTFFSKVLTPGKVFLIPRALVHFQLNVG-NEPATFIPIFNTQNPGVSDSIGTIFDATPPVPNEVLTKSFRV 335
            L R+D    G+NPPH HPR TE   V  GTL VG VT+N N  FSKV+  G VF+ P+A++HFQ+N+  N+PA      ++QNPGV      IF +TPP+ ++VL K+F+V
Sbjct:   97 LARIDYAPMGVNPPHVHPRATELLTVLEGTLYVGFVTSNPNRLFSKVVHKGDVFVFPKAMIHFQMNLDHNKPAVAQSALSSQNPGVITIASAIFGSTPPISDDVLVKAFQV 207          
BLAST of BQ623505 vs. ExPASy Swiss-Prot
Match: GL37_ORYSJ (Germin-like protein 3-7 OS=Oryza sativa subsp. japonica GN=GER7 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.162e-22
Identity = 51/111 (45.95%), Postives = 71/111 (63.96%), Query Frame = 3
Query:   15 RLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTNNTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTIFDATPPVPNEVLTKSFRVGDDV 347
            R+DL  GG+NP H+HPR  E   V  G +LVG V+T   ++SKV+  G+ F IPR L+HFQ N GN  A  + +FN+Q PGV  +   +F A P +P+ VL KSF+V  ++
Sbjct:  113 RVDLAPGGVNPLHSHPRAAELVHVITGRMLVGFVSTAGKYYSKVVGEGETFAIPRGLMHFQYNPGNASARAMTVFNSQLPGVVPAATALFGADPEIPDAVLAKSFQVDAEI 223          
BLAST of BQ623505 vs. ExPASy Swiss-Prot
Match: GL17_ARATH (Germin-like protein subfamily 1 member 7 OS=Arabidopsis thaliana GN=At3g05950 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.162e-22
Identity = 54/116 (46.55%), Postives = 70/116 (60.34%), Query Frame = 3
Query:    9 LFRLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTN---NTFFSKVLTPGKVFLIPRALVHFQLNVGNEPATFIPIFNTQNPGVSDSIGTIFDATPPVPNEVLTKSFRVGDDV 347
            L R+D   GG NPPHTHPR TE  +V  GTLLVG VT+N   N  FSKVL PG VF+ P  ++HFQ+NVG   A       +QNPG       +F + P +  E+L K+F++  +V
Sbjct:   98 LVRIDFAPGGQNPPHTHPRATEILVVVEGTLLVGFVTSNQDNNRLFSKVLYPGDVFVFPIGMIHFQVNVGRTNAVAFAGLGSQNPGTITIADAVFGSKPSIMPEILAKAFQLDVNV 213          
BLAST of BQ623505 vs. ExPASy Swiss-Prot
Match: GL89_ORYSJ (Germin-like protein 8-9 OS=Oryza sativa subsp. japonica GN=Os08g0189850 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 1.518e-22
Identity = 56/111 (50.45%), Postives = 70/111 (63.06%), Query Frame = 3
Query:   15 RLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTT--NNTFFSKVLTPGKVFLIPRALVHFQLNVG-NEPATFIPIFNTQNPGVSDSIGTIFDATPPVPNEVLTKSFRVG 338
            R+D    G NPPHTHPR TE   V  GTL VG VT+  NNT FSKVL  G VF+ P  L+HFQ N   ++PA  I   ++QNPGV      +F + PP+ +EVL K+F+VG
Sbjct:   97 RIDYAPLGQNPPHTHPRATEILTVLEGTLHVGFVTSNPNNTLFSKVLNKGDVFVFPVGLIHFQFNPNPHQPAVAIAALSSQNPGVITIANAVFGSKPPISDEVLAKAFQVG 207          
BLAST of BQ623505 vs. ExPASy Swiss-Prot
Match: GL84_ORYSJ (Germin-like protein 8-4 OS=Oryza sativa subsp. japonica GN=GER1 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 2.589e-22
Identity = 53/111 (47.75%), Postives = 72/111 (64.86%), Query Frame = 3
Query:    9 LFRLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTTN-NTFFSKVLTPGKVFLIPRALVHFQLNVG-NEPATFIPIFNTQNPGVSDSIGTIFDATPPVPNEVLTKSFRV 335
            L R+D    G+NPPH HPR TE   V  GTL VG VT+N N  FSKV+  G  F+ P+A++HFQ+N+  N+PA      N+QNPGV      +F + PP+ ++VLTK+F+V
Sbjct:   97 LARIDYAPLGVNPPHIHPRATELLTVLEGTLYVGFVTSNPNRLFSKVVHKGDTFVFPKAMIHFQMNLDHNKPAVAQSSLNSQNPGVITIASAVFGSKPPISDDVLTKAFQV 207          
BLAST of BQ623505 vs. ExPASy Swiss-Prot
Match: GL85_ORYSJ (Germin-like protein 8-5 OS=Oryza sativa subsp. japonica GN=Os08g0189400 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 4.416e-22
Identity = 54/110 (49.09%), Postives = 69/110 (62.73%), Query Frame = 3
Query:   15 RLDLDVGGINPPHTHPRGTEAGIVTRGTLLVGIVTT--NNTFFSKVLTPGKVFLIPRALVHFQLNVG-NEPATFIPIFNTQNPGVSDSIGTIFDATPPVPNEVLTKSFRV 335
            R+D    G NPPHTHPR TE   V  GTL VG VT+  NNT FSKVL  G VF+ P+ L+HFQ N   ++PA  I   ++QNPG       +F + PP+ +EVL K+F+V
Sbjct:   97 RIDYAPLGQNPPHTHPRATEILTVLEGTLYVGFVTSNPNNTLFSKVLNKGDVFVFPQGLIHFQFNPNPHQPAVAIAALSSQNPGAITIANAVFGSKPPISDEVLAKAFQV 206          
The following BLAST results are available for this feature:
BLAST of BQ623505 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
GL110_ARATH6.162e-2449.55Germin-like protein subfamily 1 member 10 OS=Arabi... [more]
GL13_ORYSJ2.341e-2347.66Germin-like protein 1-3 OS=Oryza sativa subsp. jap... [more]
GL12_ORYSJ2.341e-2345.45Germin-like protein 1-2 OS=Oryza sativa subsp. jap... [more]
GL38_ORYSJ3.058e-2348.60Germin-like protein 3-8 OS=Oryza sativa subsp. jap... [more]
GL83_ORYSJ8.897e-2348.65Germin-like protein 8-3 OS=Oryza sativa subsp. jap... [more]
GL37_ORYSJ1.162e-2245.95Germin-like protein 3-7 OS=Oryza sativa subsp. jap... [more]
GL17_ARATH1.162e-2246.55Germin-like protein subfamily 1 member 7 OS=Arabid... [more]
GL89_ORYSJ1.518e-2250.45Germin-like protein 8-9 OS=Oryza sativa subsp. jap... [more]
GL84_ORYSJ2.589e-2247.75Germin-like protein 8-4 OS=Oryza sativa subsp. jap... [more]
GL85_ORYSJ4.416e-2249.09Germin-like protein 8-5 OS=Oryza sativa subsp. jap... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00596 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00596 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623505 ID=BQ623505; Name=BQ623505; organism=Citrus sinensis; type=EST; length=523bp
AGTTTCACCTCTTCCGACTTGACTTGGATGTCGGCGGAATAAACCCGCCT
CATACGCATCCTCGTGGAACTGAGGCTGGTATTGTTACCAGAGGAACGTT
GCTCGTAGGTATAGTAACAACTAATAATACCTTTTTCTCAAAGGTCTTGA
CTCCCGGGAAGGTGTTCTTAATTCCTAGAGCACTGGTTCACTTCCAACTA
AATGTTGGAAACGAGCCGGCCACCTTTATACCTATTTTCAATACTCAAAA
TCCTGGCGTTTCGGATTCAATCGGTACTATATTTGACGCAACGCCTCCCG
TTCCCAATGAAGTGTTGACCAAATCTTTCCGAGTGGGTGATGATGTGATC
AATGCCATCAGAGCAGCCCGAGCCCAATCAAGCTAGATTAACATCCTCGA
TGTTCGATCGATATCCTTTATGTCTCACAACTAATGGATGAGATCTGGTG
TGTGTACTAATTATTAAATAAAGAATAAAGCTGAGACAACCAATAATTAT
AGAATAAAAAAAAAAAAAAAAAA
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