BQ623506

Overview
NameBQ623506
Unique NameBQ623506
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623506 vs. ExPASy Swiss-Prot
Match: UCRI_TRIEI (Cytochrome b6-f complex iron-sulfur subunit OS=Trichodesmium erythraeum (strain IMS101) GN=petC PE=3 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 9.504e-57
Identity = 94/131 (71.76%), Postives = 112/131 (85.50%), Query Frame = 3
Query:    6 GSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 398
            G +GGG TAKDA+GNDII +++L  H  G+RTL +GLKGDPTY+V+E ++TLA YG+NAVCTHLGCVVPWN +ENKFICPCHGSQY+N G+VVRGPAPLSLAL HAN+ + K+VF  W ETDFRTGE PWW
Sbjct:   48 GGSGGGVTAKDALGNDIIVSEFLANHNSGERTLAQGLKGDPTYVVIEGEQTLAEYGLNAVCTHLGCVVPWNGSENKFICPCHGSQYDNTGKVVRGPAPLSLALVHANVSDDKLVFTQWEETDFRTGEKPWW 178          
BLAST of BQ623506 vs. ExPASy Swiss-Prot
Match: UCRI_SYNP2 (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=petC PE=3 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.117e-56
Identity = 97/133 (72.93%), Postives = 113/133 (84.96%), Query Frame = 3
Query:    6 GSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI-ENGKVVFVPWTETDFRTGEAPWWA 401
            G AGGG  AKDA+GNDII +D+L TH  GDR+L +GLKGDPTY+VVE D T++SYGINA+CTHLGCVVPWN+AENKF+CPCHGSQY+  G+VVRGPAPLSLAL HA + E+ K+ F  WTETDFRT EAPWWA
Sbjct:   48 GGAGGGVIAKDALGNDIIVSDYLQTHTAGDRSLAQGLKGDPTYVVVEGDNTISSYGINAICTHLGCVVPWNTAENKFMCPCHGSQYDETGKVVRGPAPLSLALVHAEVTEDDKISFTDWTETDFRTDEAPWWA 180          
BLAST of BQ623506 vs. ExPASy Swiss-Prot
Match: UCRIA_ANAVT (Cytochrome b6-f complex iron-sulfur subunit 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=petC PE=3 SV=1)

HSP 1 Score: 214.542 bits (545), Expect = 3.993e-55
Identity = 93/132 (70.45%), Postives = 108/132 (81.82%), Query Frame = 3
Query:    6 GSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 401
            G AGGGTTAKD +GND+  + +L +H  GDRTL +GLKGDPTY+VVE  + +  YGINAVCTHLGCVVPWN+AENKF CPCHGSQY+  G+VVRGPAP SLAL+HA  EN K+V  PWTETDFRTGE PWW+
Sbjct:   48 GGAGGGTTAKDELGNDVSVSKFLESHNVGDRTLVQGLKGDPTYIVVESKEAITDYGINAVCTHLGCVVPWNAAENKFKCPCHGSQYDATGKVVRGPAPKSLALSHAKTENDKIVLTPWTETDFRTGEEPWWS 179          
BLAST of BQ623506 vs. ExPASy Swiss-Prot
Match: UCRI_CYAP4 (Cytochrome b6-f complex iron-sulfur subunit OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=petC PE=3 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 1.982e-54
Identity = 91/131 (69.47%), Postives = 106/131 (80.92%), Query Frame = 3
Query:    6 GSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 398
            G  GGG  AKDA+GNDI  +D+L  H   DR L +GLKGDPTY+VV+ D T+  YG+NAVCTHLGCVVPWN +ENKFICPCHGSQY+N G+VVRGPAPLSLALAHA + + K+ F PWTETDFRTG+ PWW
Sbjct:   48 GGVGGGVVAKDALGNDISVSDFLAKHPANDRALAQGLKGDPTYIVVQDDHTIGDYGLNAVCTHLGCVVPWNISENKFICPCHGSQYDNTGKVVRGPAPLSLALAHAAVSDDKITFTPWTETDFRTGKEPWW 178          
BLAST of BQ623506 vs. ExPASy Swiss-Prot
Match: UCRIA_CYAPA (Cytochrome b6-f complex iron-sulfur subunit 1, cyanelle OS=Cyanophora paradoxa GN=petC-1 PE=2 SV=1)

HSP 1 Score: 211.846 bits (538), Expect = 2.588e-54
Identity = 92/132 (69.70%), Postives = 110/132 (83.33%), Query Frame = 3
Query:    6 GSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI-ENGKVVFVPWTETDFRTGEAPWW 398
            G AG G  AKDA+GND+  + WL TH PGDR+L +GLKGD TYL+V++D TL +YG+NAVCTHLGCVVPWN++ENKF+CPCHGSQY+  G+VVRGPAPLSLALAH ++ E+G V F PWTETDFRT  APWW
Sbjct:  107 GGAGAGQAAKDALGNDVKVSSWLETHKPGDRSLAQGLKGDATYLIVKEDGTLENYGLNAVCTHLGCVVPWNASENKFMCPCHGSQYDRTGKVVRGPAPLSLALAHVSVLEDGVVAFEPWTETDFRTNTAPWW 238          
BLAST of BQ623506 vs. ExPASy Swiss-Prot
Match: UCRIA_ANASP (Cytochrome b6-f complex iron-sulfur subunit 1 OS=Anabaena sp. (strain PCC 7120) GN=petC1 PE=1 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.380e-54
Identity = 92/132 (69.70%), Postives = 107/132 (81.06%), Query Frame = 3
Query:    6 GSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 401
            G AGGGTTAKD +GND+  + +L +H  GDRTL +GLKGDPTY+VVE  + +  YGINAVCTHLGCVVPWN+AENKF CPCHGSQY+  G+VVRGPAP SLAL+HA  EN K+V   WTETDFRTGE PWW+
Sbjct:   48 GGAGGGTTAKDELGNDVSVSKFLESHNVGDRTLVQGLKGDPTYIVVESKEAITDYGINAVCTHLGCVVPWNAAENKFKCPCHGSQYDATGKVVRGPAPKSLALSHAKTENDKIVLTSWTETDFRTGEEPWWS 179          
BLAST of BQ623506 vs. ExPASy Swiss-Prot
Match: UCRI_NOSSP (Cytochrome b6-f complex iron-sulfur subunit OS=Nostoc sp. (strain PCC 7906) GN=petC PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 9.835e-54
Identity = 91/132 (68.94%), Postives = 106/132 (80.30%), Query Frame = 3
Query:    6 GSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 401
            G AGGGTTAKD +GND+  + +L     GDR L +GLKGDPTY+VVE  + +  YGINA+CTHLGCVVPWN AENKF CPCHGSQY+  G+VVRGPAPLSLALAHAN  + K++  PWTETDFRTG+APWWA
Sbjct:   48 GGAGGGTTAKDELGNDVSLSKFLENRNAGDRALVQGLKGDPTYIVVENKQAIKDYGINAICTHLGCVVPWNVAENKFKCPCHGSQYDETGKVVRGPAPLSLALAHANTVDDKIILSPWTETDFRTGDAPWWA 179          
BLAST of BQ623506 vs. ExPASy Swiss-Prot
Match: UCRI_NOSP7 (Cytochrome b6-f complex iron-sulfur subunit OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=petC PE=3 SV=1)

HSP 1 Score: 209.534 bits (532), Expect = 1.284e-53
Identity = 89/132 (67.42%), Postives = 105/132 (79.55%), Query Frame = 3
Query:    6 GSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 401
            G AGGGTTAKD +GND+    +L     GDR L +GLKGDPTY+VV+  + +  YGINA+CTHLGCVVPWN AENKF CPCHGSQY+  G+VVRGPAPLSLALAH N+ + K+V  PWTETDFRTG+APWW+
Sbjct:   48 GGAGGGTTAKDELGNDVSVTKFLENRNAGDRNLVQGLKGDPTYIVVDSKEAIKDYGINAICTHLGCVVPWNVAENKFKCPCHGSQYDETGKVVRGPAPLSLALAHTNVSDDKIVLTPWTETDFRTGDAPWWS 179          
BLAST of BQ623506 vs. ExPASy Swiss-Prot
Match: UCRIB_SYNY3 (Cytochrome b6-f complex iron-sulfur subunit 2 OS=Synechocystis sp. (strain PCC 6803) GN=petC2 PE=3 SV=2)

HSP 1 Score: 209.534 bits (532), Expect = 1.284e-53
Identity = 92/133 (69.17%), Postives = 112/133 (84.21%), Query Frame = 3
Query:    6 GSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI-ENGKVVFVPWTETDFRTGEAPWWA 401
            G +GGG TAKDA+GND+   ++L +H  GDR L +GLKGDPTY+VV+ D T+A+YGINAVCTHLGCVVPWN++ENKF+CPCHGSQYN +G+VVRGPAPLSLALAHA + ++ K+V   WTETDFRT E PWWA
Sbjct:   48 GGSGGGVTAKDALGNDVKVTEFLASHNAGDRVLAQGLKGDPTYIVVQGDDTIANYGINAVCTHLGCVVPWNASENKFMCPCHGSQYNAEGKVVRGPAPLSLALAHATVTDDDKLVLSTWTETDFRTDEDPWWA 180          
BLAST of BQ623506 vs. ExPASy Swiss-Prot
Match: UCRIA_CHLRE (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Chlamydomonas reinhardtii GN=petC PE=1 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.678e-53
Identity = 94/133 (70.68%), Postives = 108/133 (81.20%), Query Frame = 3
Query:    6 GSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI-ENGKVVFVPWTETDFRTGEAPWWA 401
            G  GGG  AKDA+GNDI A +WL TH  GDR+L++GLKGDPTYL+V  D T+  YG+NAVCTHLGCVVPW +AENKF CPCHGSQYN +G+VVRGPAPLSLALAH ++ E+G V F  WTETDFRTG  PWWA
Sbjct:   74 GGGGGGQAAKDALGNDIKAGEWLKTHLAGDRSLSQGLKGDPTYLIVTADSTIEKYGLNAVCTHLGCVVPWVAAENKFKCPCHGSQYNAEGKVVRGPAPLSLALAHCDVAESGLVTFSTWTETDFRTGLEPWWA 206          
The following BLAST results are available for this feature:
BLAST of BQ623506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
UCRI_TRIEI9.504e-5771.76Cytochrome b6-f complex iron-sulfur subunit OS=Tri... [more]
UCRI_SYNP22.117e-5672.93Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRIA_ANAVT3.993e-5570.45Cytochrome b6-f complex iron-sulfur subunit 1 OS=A... [more]
UCRI_CYAP41.982e-5469.47Cytochrome b6-f complex iron-sulfur subunit OS=Cya... [more]
UCRIA_CYAPA2.588e-5469.70Cytochrome b6-f complex iron-sulfur subunit 1, cya... [more]
UCRIA_ANASP3.380e-5469.70Cytochrome b6-f complex iron-sulfur subunit 1 OS=A... [more]
UCRI_NOSSP9.835e-5468.94Cytochrome b6-f complex iron-sulfur subunit OS=Nos... [more]
UCRI_NOSP71.284e-5367.42Cytochrome b6-f complex iron-sulfur subunit OS=Nos... [more]
UCRIB_SYNY31.284e-5369.17Cytochrome b6-f complex iron-sulfur subunit 2 OS=S... [more]
UCRIA_CHLRE1.678e-5370.68Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00597 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00597 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623506 ID=BQ623506; Name=BQ623506; organism=Citrus sinensis; type=EST; length=679bp
GTTTAGGAAGTGCTGGTGGTGGTACTACTGCCAAGGATGCCATTGGCAAT
GACATCATTGCCGCTGATTGGCTTAACACGCACGGCCCTGGGGACCGAAC
CCTCACCGAAGGATTGAAGGGAGATCCAACCTACCTTGTTGTGGAAAAAG
ACAAAACACTTGCATCATATGGAATCAATGCTGTCTGCACTCACCTTGGA
TGTGTGGTGCCATGGAATTCAGCTGAGAACAAGTTCATCTGTCCCTGCCA
CGGATCCCAATACAATAACCAAGGAAGAGTTGTGAGAGGGCCTGCTCCAT
TGTCATTGGCATTGGCTCATGCCAACATTGAAAATGGTAAGGTAGTCTTC
GTTCCATGGACGGAAACAGATTTCAGAACTGGTGAAGCTCCATGGTGGGC
TTAAACTTGTTCCGGTGCCTGTGCTTTCAATATTCAAGTTTTGGCCGGTC
GGTTTGCTTTGCCGTACTGCATAAACATACTGTAACGGAACATGCTTTAT
CAGAATGAAGCTTACAACATGTAAAGCTACTTGGCTTGAATCATGCTATC
TTGTAATCTTGGCAATCTTGACAATTTTCTCTTATCCATTCATTCTTTGA
TCTCAAAAATTCATACGCTCAACAATGTAATGCTACAGCTTCAACGTTGG
ATATAAGTTTTATCATTTATTAAGTAAAA
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