BQ623506

Overview
NameBQ623506
Unique NameBQ623506
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length679
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9255 contig Csv1_Contig9255:366..1045. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623506 vs. ExPASy Swiss-Prot
Match: UCRIB_CYAPA (Cytochrome b6-f complex iron-sulfur subunit 2, cyanelle OS=Cyanophora paradoxa GN=petC-2 PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 2.422e-52
Identity = 92/132 (69.70%), Postives = 104/132 (78.79%), Query Frame = 3
Query:    6 GSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI-ENGKVVFVPWTETDFRTGEAPWW 398
            G AG G  AKDA GNDI    WL T  PGDR+L +GLKGD TYL+V++D TL  YG+NAVCTHLGCVVPWN +E KF+CPCHGSQY+  G+VVRGPAPLSLALAH N+ E+G V F PWTETDFRT  APWW
Sbjct:  109 GGAGAGQAAKDAAGNDIKVEKWLETXKPGDRSLAQGLKGDATYLIVKEDGTLEKYGLNAVCTHLGCVVPWNQSEGKFMCPCHGSQYDRTGKVVRGPAPLSLALAHVNVLEDGVVAFEPWTETDFRTNTAPWW 240          
BLAST of BQ623506 vs. ExPASy Swiss-Prot
Match: UCRI_SYNR3 (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain RCC307) GN=petC PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.164e-52
Identity = 88/130 (67.69%), Postives = 104/130 (80.00%), Query Frame = 3
Query:   12 AGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 401
            AGGGTTAKD +GND+ A+ WL  H  GDR+L +GLKGDPTYL+V+   ++  YGINA+CTHLGCVVPWN+  NKF+CPCHGSQY+  G+VVRGPAPLSLALAH N+EN  V    W+ETDFRT E PWWA
Sbjct:   49 AGGGTTAKDELGNDVTASGWLADHKEGDRSLVQGLKGDPTYLIVDGPDSIGDYGINAICTHLGCVVPWNAGANKFMCPCHGSQYDATGKVVRGPAPLSLALAHVNVENDNVFVSQWSETDFRTDEKPWWA 178          
BLAST of BQ623506 vs. ExPASy Swiss-Prot
Match: UCRI_PROM4 (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain MIT 9211) GN=petC PE=3 SV=1)

HSP 1 Score: 204.142 bits (518), Expect = 5.396e-52
Identity = 87/131 (66.41%), Postives = 105/131 (80.15%), Query Frame = 3
Query:    6 GSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWW 398
            G  GGGT+AKD +GN I A+ WL+ H  GDR+L +GLKGDPTYL+VE  + + ++GINA+CTHLGCVVPWNS  NK+ICPCHGSQY+  G+VVRGPAPLSLALAH ++E+ KV    W ETDFRTGE PWW
Sbjct:   47 GGGGGGTSAKDELGNPITASGWLSNHPAGDRSLVQGLKGDPTYLIVEGSEAIGNFGINAICTHLGCVVPWNSGANKYICPCHGSQYDANGKVVRGPAPLSLALAHIDVEDDKVFVSQWAETDFRTGEKPWW 177          
BLAST of BQ623506 vs. ExPASy Swiss-Prot
Match: UCRI_THEEB (Cytochrome b6-f complex iron-sulfur subunit OS=Thermosynechococcus elongatus (strain BP-1) GN=petC PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.202e-51
Identity = 88/132 (66.67%), Postives = 109/132 (82.58%), Query Frame = 3
Query:    6 GSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI-ENGKVVFVPWTETDFRTGEAPWW 398
            G  GGG  AKDA+GNDI  +++L  H PGDR+L +G+KGDPTY++V +D  +A+YG+NAVCTHLGCVVPWN +ENKFICPCHGSQY++ G+VVRGPAPLSLAL  A + E+ K+VF PWTE DFRTG+ PWW
Sbjct:   48 GGTGGGAVAKDALGNDIKVSEYLAKHLPGDRSLAQGIKGDPTYVIVTEDHQIANYGLNAVCTHLGCVVPWNVSENKFICPCHGSQYDSTGKVVRGPAPLSLALVKATVTEDDKLVFTPWTEIDFRTGKEPWW 179          
BLAST of BQ623506 vs. ExPASy Swiss-Prot
Match: UCRI_SYNEL (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus elongatus GN=petC PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.202e-51
Identity = 88/132 (66.67%), Postives = 109/132 (82.58%), Query Frame = 3
Query:    6 GSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI-ENGKVVFVPWTETDFRTGEAPWW 398
            G  GGG  AKDA+GNDI  +++L  H PGDR+L +G+KGDPTY++V +D  +A+YG+NAVCTHLGCVVPWN +ENKFICPCHGSQY++ G+VVRGPAPLSLAL  A + E+ K+VF PWTE DFRTG+ PWW
Sbjct:   48 GGTGGGAVAKDALGNDIKVSEYLAKHLPGDRSLAQGIKGDPTYVIVTEDHQIANYGLNAVCTHLGCVVPWNVSENKFICPCHGSQYDSTGKVVRGPAPLSLALVKATVTEDDKLVFTPWTEIDFRTGKEPWW 179          
BLAST of BQ623506 vs. ExPASy Swiss-Prot
Match: UCRI_SYNS3 (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain CC9311) GN=petC PE=3 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.051e-51
Identity = 86/129 (66.67%), Postives = 105/129 (81.40%), Query Frame = 3
Query:   15 GGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 401
            GGGT+AKD +GN + A+ WL++H  GDR+L +GLKGDPTYL+VE    + SYGINA+CTHLGCVVPWNS  NKF+CPCHGSQY+  G+VVRGPAPLSLALA+ +++N  V    WTETDFRTGE PWW+
Sbjct:   50 GGGTSAKDELGNSVTASGWLSSHAEGDRSLVQGLKGDPTYLIVEGVDAIGSYGINAICTHLGCVVPWNSGANKFMCPCHGSQYDATGKVVRGPAPLSLALANVSVDNDNVFVSQWTETDFRTGEKPWWS 178          
BLAST of BQ623506 vs. ExPASy Swiss-Prot
Match: UCRIA_VOLCA (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic OS=Volvox carteri GN=petC PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.051e-51
Identity = 92/133 (69.17%), Postives = 106/133 (79.70%), Query Frame = 3
Query:    6 GSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANI-ENGKVVFVPWTETDFRTGEAPWWA 401
            G   GG  AKDA+GNDI A  WL TH  GDR+L++GLKGDPTYL+V  D T+  YG+NAVCTHLGCVVPW +AENKF CPCHGSQYN +G+VVRGPAPLSLALAH ++ E+G V F  W+ETDFRTG  PWWA
Sbjct:   74 GGGSGGQAAKDALGNDIKANAWLATHQKGDRSLSQGLKGDPTYLIVTADGTIEKYGLNAVCTHLGCVVPWVAAENKFKCPCHGSQYNAEGKVVRGPAPLSLALAHCDVQEDGLVTFSTWSETDFRTGLEPWWA 206          
BLAST of BQ623506 vs. ExPASy Swiss-Prot
Match: UCRI_SYNS9 (Cytochrome b6-f complex iron-sulfur subunit OS=Synechococcus sp. (strain CC9902) GN=petC PE=3 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 3.498e-51
Identity = 87/130 (66.92%), Postives = 105/130 (80.77%), Query Frame = 3
Query:   12 AGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 401
            +GGGTTAKD +GN + A  WL+TH  GDR+L +GLKGDPTYL+VE    + SYGINA+CTHLGCVVPWNS  NKF+CPCHGSQY+  G+VVRGPAPLSLALA+ ++E+  V    W+ETDFRTG+ PWWA
Sbjct:   49 SGGGTTAKDELGNVVTATGWLSTHPEGDRSLVQGLKGDPTYLIVEGADAIGSYGINAICTHLGCVVPWNSGANKFMCPCHGSQYDATGKVVRGPAPLSLALANVSVEDDNVFVSEWSETDFRTGDKPWWA 178          
BLAST of BQ623506 vs. ExPASy Swiss-Prot
Match: UCRI_PROMA (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus GN=petC PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 5.966e-51
Identity = 85/132 (64.39%), Postives = 104/132 (78.79%), Query Frame = 3
Query:    6 GSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 401
            G   GGTTAKD +GN + A  WL+ H  GDR+L +GLKGDPTYL+V+ D  + ++GINA+CTHLGCVVPWNS  NK+ICPCHGSQY+  G+VVRGPAPLSLAL H +I++  V+   WTETDFRTG+ PWWA
Sbjct:   47 GGGTGGTTAKDELGNAVTATGWLSNHPAGDRSLVQGLKGDPTYLIVDGDAAIGNFGINAICTHLGCVVPWNSGANKYICPCHGSQYDANGKVVRGPAPLSLALTHIDIDDDNVLVSQWTETDFRTGDKPWWA 178          
BLAST of BQ623506 vs. ExPASy Swiss-Prot
Match: UCRI_PROMS (Cytochrome b6-f complex iron-sulfur subunit OS=Prochlorococcus marinus (strain AS9601) GN=petC PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 6.597e-50
Identity = 85/132 (64.39%), Postives = 102/132 (77.27%), Query Frame = 3
Query:    6 GSAGGGTTAKDAIGNDIIAADWLNTHGPGDRTLTEGLKGDPTYLVVEKDKTLASYGINAVCTHLGCVVPWNSAENKFICPCHGSQYNNQGRVVRGPAPLSLALAHANIENGKVVFVPWTETDFRTGEAPWWA 401
            G  GGGT+AKD +GN I    WL TH  GDR+L +GLKGDPTYL+V +   +  +G+NA+CTHLGCVVPW+S  NKFICPCHGSQY+  G+VVRGPAPLSLALAH +IE+  V+   W+ETDFRT E PWWA
Sbjct:   47 GGGGGGTSAKDELGNPITKTGWLATHQAGDRSLVQGLKGDPTYLIVNEGGEIGEFGLNAICTHLGCVVPWDSGANKFICPCHGSQYDTNGKVVRGPAPLSLALAHVDIEDDAVLVKQWSETDFRTNENPWWA 178          
The following BLAST results are available for this feature:
BLAST of BQ623506 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
UCRIB_CYAPA2.422e-5269.70Cytochrome b6-f complex iron-sulfur subunit 2, cya... [more]
UCRI_SYNR33.164e-5267.69Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_PROM45.396e-5266.41Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_THEEB1.202e-5166.67Cytochrome b6-f complex iron-sulfur subunit OS=The... [more]
UCRI_SYNEL1.202e-5166.67Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_SYNS32.051e-5166.67Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRIA_VOLCA2.051e-5169.17Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
UCRI_SYNS93.498e-5166.92Cytochrome b6-f complex iron-sulfur subunit OS=Syn... [more]
UCRI_PROMA5.966e-5164.39Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]
UCRI_PROMS6.597e-5064.39Cytochrome b6-f complex iron-sulfur subunit OS=Pro... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00597 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00597 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623506 ID=BQ623506; Name=BQ623506; organism=Citrus sinensis; type=EST; length=679bp
GTTTAGGAAGTGCTGGTGGTGGTACTACTGCCAAGGATGCCATTGGCAAT
GACATCATTGCCGCTGATTGGCTTAACACGCACGGCCCTGGGGACCGAAC
CCTCACCGAAGGATTGAAGGGAGATCCAACCTACCTTGTTGTGGAAAAAG
ACAAAACACTTGCATCATATGGAATCAATGCTGTCTGCACTCACCTTGGA
TGTGTGGTGCCATGGAATTCAGCTGAGAACAAGTTCATCTGTCCCTGCCA
CGGATCCCAATACAATAACCAAGGAAGAGTTGTGAGAGGGCCTGCTCCAT
TGTCATTGGCATTGGCTCATGCCAACATTGAAAATGGTAAGGTAGTCTTC
GTTCCATGGACGGAAACAGATTTCAGAACTGGTGAAGCTCCATGGTGGGC
TTAAACTTGTTCCGGTGCCTGTGCTTTCAATATTCAAGTTTTGGCCGGTC
GGTTTGCTTTGCCGTACTGCATAAACATACTGTAACGGAACATGCTTTAT
CAGAATGAAGCTTACAACATGTAAAGCTACTTGGCTTGAATCATGCTATC
TTGTAATCTTGGCAATCTTGACAATTTTCTCTTATCCATTCATTCTTTGA
TCTCAAAAATTCATACGCTCAACAATGTAATGCTACAGCTTCAACGTTGG
ATATAAGTTTTATCATTTATTAAGTAAAA
back to top