BQ623508

Overview
NameBQ623508
Unique NameBQ623508
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length649
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623508 vs. ExPASy Swiss-Prot
Match: EF1A_THECE (Elongation factor 1-alpha OS=Thermococcus celer GN=tuf PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 3.915e-38
Identity = 63/140 (45.00%), Postives = 95/140 (67.86%), Query Frame = 2
Query:   59 LAFNVKNVAVKDLKRGFVASNSKDDPA--REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 472
            + FNV+ V   D+KRG VA ++ + P   R    F +Q+I++NHP  I  GY PVL  HT  +AV+F +L+ K+D R+G  +E+ P+F+K GD+ +V + PTKPMV+E   + P +GRFA+RDM QTVA G++ S++K +
Sbjct:  289 IGFNVRGVGKNDIKRGDVAGHTNNPPTVVRPKDTFKAQIIVLNHPTAITVGYTPVLHAHTLQVAVRFEQLLAKLDPRTGNIVEENPQFIKTGDSAIVVLRPTKPMVIEPVKEIPQMGRFAIRDMGQTVAAGMVISIQKAE 428          

HSP 2 Score: 43.1282 bits (100), Expect = 3.915e-38
Identity = 17/21 (80.95%), Postives = 20/21 (95.24%), Query Frame = 1
Query:    1 VKSVEMHHEALQEALPGDNVG 63
            VKS+EMHHE +QEALPGDN+G
Sbjct:  270 VKSIEMHHEPMQEALPGDNIG 290          
BLAST of BQ623508 vs. ExPASy Swiss-Prot
Match: EF1A_PYRKO (Elongation factor 1-alpha OS=Pyrococcus kodakaraensis GN=tuf PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.914e-37
Identity = 63/140 (45.00%), Postives = 95/140 (67.86%), Query Frame = 2
Query:   59 LAFNVKNVAVKDLKRGFVASNSKDDPA--REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 472
            + FNV+ V   D+KRG VA ++ + P   R    F +Q+I++NHP  I  GY PVL  HT+ +AV+F +L+ K+D R+G  +E+ P+F+K GD+ +V + PTK MV+E   + P +GRFA+RDM QTVA G++ S++K D
Sbjct:  289 IGFNVRGVGKNDIKRGDVAGHTTNPPTVVRPKDTFKAQIIVLNHPTAITVGYTPVLHAHTTQVAVRFEQLLAKLDPRTGNIVEENPQFIKTGDSAIVILRPTKAMVIEPVKEIPQMGRFAIRDMGQTVAAGMVISIQKAD 428          

HSP 2 Score: 41.9726 bits (97), Expect = 1.914e-37
Identity = 17/21 (80.95%), Postives = 19/21 (90.48%), Query Frame = 1
Query:    1 VKSVEMHHEALQEALPGDNVG 63
            VKS+EMHHE LQEA PGDN+G
Sbjct:  270 VKSIEMHHEPLQEAYPGDNIG 290          
BLAST of BQ623508 vs. ExPASy Swiss-Prot
Match: EF1A_THEGJ (Elongation factor 1-alpha OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=tuf PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 5.512e-37
Identity = 62/140 (44.29%), Postives = 95/140 (67.86%), Query Frame = 2
Query:   59 LAFNVKNVAVKDLKRGFVASNSKDDPA--REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 472
            + FNV+ V   D+KRG VA ++ + P   R    F +Q+I++NHP  I  GY PVL  HT+ +AV+F +L+ K+D R+G  +E+ P+F+K GD+ +V + PTK MV+E   + P +GRFA+RDM QTVA G++ S++K +
Sbjct:  289 IGFNVRGVGKNDIKRGDVAGHTTNPPTVVRPKDTFKAQIIVLNHPTAITVGYTPVLHAHTTQVAVRFEQLLAKLDPRTGNIVEENPQFIKTGDSAIVILRPTKAMVIEPVKEIPQMGRFAIRDMGQTVAAGMVISIQKAE 428          

HSP 2 Score: 41.9726 bits (97), Expect = 5.512e-37
Identity = 17/21 (80.95%), Postives = 19/21 (90.48%), Query Frame = 1
Query:    1 VKSVEMHHEALQEALPGDNVG 63
            VKS+EMHHE LQEA PGDN+G
Sbjct:  270 VKSIEMHHEPLQEAYPGDNIG 290          
BLAST of BQ623508 vs. ExPASy Swiss-Prot
Match: EF1A_ARCFU (Elongation factor 1-alpha OS=Archaeoglobus fulgidus GN=tuf PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 7.181e-37
Identity = 62/131 (47.33%), Postives = 91/131 (69.47%), Query Frame = 2
Query:   59 LAFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVI 451
            + FNV+ V+ KD++RG VA +  D+P     +FT+Q++++ HP  I  GY PV+  HT+ IA +F EL  KID R+G+  E+ P+FLK GDA +VK+ PT+PMV+E   D PP+GRFA+RDM  T+  G++
Sbjct:  287 IGFNVRGVSKKDIRRGDVAGHP-DNPPTVVKDFTAQLVVLQHPTAITVGYTPVVHAHTAQIACRFVELQKKIDPRTGQVKEENPQFLKTGDAAIVKLEPTRPMVIERVKDIPPMGRFAIRDMGMTIGAGMV 416          

HSP 2 Score: 41.2022 bits (95), Expect = 7.181e-37
Identity = 16/21 (76.19%), Postives = 19/21 (90.48%), Query Frame = 1
Query:    1 VKSVEMHHEALQEALPGDNVG 63
            VKS+EMHHE +QEA PGDN+G
Sbjct:  268 VKSIEMHHEPIQEAYPGDNIG 288          
BLAST of BQ623508 vs. ExPASy Swiss-Prot
Match: EF1A_METHJ (Elongation factor 1-alpha OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=tuf PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 1.587e-36
Identity = 64/137 (46.72%), Postives = 91/137 (66.42%), Query Frame = 2
Query:   59 LAFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 469
            + FNV+ +   D++RG V   S D+P   A  FT+Q++++ HP  I  GY PV  CHT+  A  F+ELV K+D R+G+ LE+ P FLK GDA ++K  PTKP+ +E   ++P LGRFA+RDM QT+A G+  +V KK
Sbjct:  287 IGFNVRGIGKDDVRRGDVCGAS-DNPPAVAEEFTAQIVVLQHPSAITVGYTPVFHCHTAQTACTFTELVKKLDPRTGQTLEENPTFLKAGDAAIIKCHPTKPLCLENAKEFPQLGRFAIRDMGQTIAAGMCINVVKK 422          

HSP 2 Score: 38.5058 bits (88), Expect = 1.587e-36
Identity = 14/21 (66.67%), Postives = 19/21 (90.48%), Query Frame = 1
Query:    1 VKSVEMHHEALQEALPGDNVG 63
            VKS+EMHHE + +A+PGDN+G
Sbjct:  268 VKSIEMHHEEIPQAVPGDNIG 288          
BLAST of BQ623508 vs. ExPASy Swiss-Prot
Match: EF1A_PYRHO (Elongation factor 1-alpha OS=Pyrococcus horikoshii GN=tuf PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.570e-36
Identity = 59/138 (42.75%), Postives = 93/138 (67.39%), Query Frame = 2
Query:   59 LAFNVKNVAVKDLKRGFVASNSKDDPA--REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 466
            + FNV+ V+  D+KRG VA ++   P   R    F +Q+I++NHP  I  GY+PVL  HT+ I V+F +++ K+D R+G  +E+ P+F+K GD+ +V + P KP+V+E   + P LGRFA+RDM  T+A G++ S++K
Sbjct:  289 IGFNVRGVSKNDIKRGDVAGHTDKPPTVVRTKDTFKAQIIVLNHPTAITVGYSPVLHAHTAQIPVRFEQILAKVDPRTGNIVEENPQFIKTGDSAIVVLRPMKPVVLEPVKEIPQLGRFAIRDMGMTIAAGMVISIQK 426          

HSP 2 Score: 43.8986 bits (102), Expect = 4.570e-36
Identity = 18/21 (85.71%), Postives = 20/21 (95.24%), Query Frame = 1
Query:    1 VKSVEMHHEALQEALPGDNVG 63
            VKS+EMHHE LQEALPGDN+G
Sbjct:  270 VKSIEMHHEPLQEALPGDNIG 290          
BLAST of BQ623508 vs. ExPASy Swiss-Prot
Match: EF1A_METJA (Elongation factor 1-alpha OS=Methanocaldococcus jannaschii GN=tuf PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.953e-36
Identity = 64/138 (46.38%), Postives = 93/138 (67.39%), Query Frame = 2
Query:   59 LAFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 472
            + FNV+ V+ KD+KRG V  +  D+P   A  FT+Q++++ HP  I  GY PV   HT+ +A  F EL+ K+D R+G+ +E+ P+FLK GDA +VK+ PTKPMV+E   + P LGRFA+RDM  T+A G+   V+ K+
Sbjct:  291 IGFNVRGVSKKDIKRGDVCGHP-DNPPTVAEEFTAQIVVLQHPTAITVGYTPVFHAHTAQVACTFIELLKKLDPRTGQVIEENPQFLKTGDAAIVKIKPTKPMVIENVREIPQLGRFAIRDMGMTIAAGMAIDVKAKN 427          

HSP 2 Score: 36.965 bits (84), Expect = 5.953e-36
Identity = 14/21 (66.67%), Postives = 18/21 (85.71%), Query Frame = 1
Query:    1 VKSVEMHHEALQEALPGDNVG 63
            VKS+EMHHE + +A PGDN+G
Sbjct:  272 VKSIEMHHEQIPQAEPGDNIG 292          
BLAST of BQ623508 vs. ExPASy Swiss-Prot
Match: EF1A_PYRAB (Elongation factor 1-alpha OS=Pyrococcus abyssi GN=tuf PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 7.754e-36
Identity = 60/138 (43.48%), Postives = 91/138 (65.94%), Query Frame = 2
Query:   59 LAFNVKNVAVKDLKRGFVASNSKDDPA--REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 466
            + FNV+ V+  D+KRG VA +    P   R    F +Q+I++NHP  I  GY+PVL  HT+ + V+F +L+ KID R+G   E+ P+F+K GD+ +V + P KP+V+E   + P LGRFA+RDM  T+A G++ S++K
Sbjct:  289 IGFNVRGVSKNDIKRGDVAGHPDKPPTVVRTKDTFKAQIIVLNHPTAITVGYSPVLHAHTAQVPVRFEQLLAKIDPRTGNITEENPQFIKTGDSAIVVLRPMKPVVLEPVKELPQLGRFAIRDMGMTIAAGMVISIQK 426          

HSP 2 Score: 43.8986 bits (102), Expect = 7.754e-36
Identity = 18/21 (85.71%), Postives = 20/21 (95.24%), Query Frame = 1
Query:    1 VKSVEMHHEALQEALPGDNVG 63
            VKS+EMHHE LQEALPGDN+G
Sbjct:  270 VKSIEMHHEPLQEALPGDNIG 290          
BLAST of BQ623508 vs. ExPASy Swiss-Prot
Match: EF1A_METLZ (Elongation factor 1-alpha OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=tuf PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.316e-35
Identity = 64/137 (46.72%), Postives = 89/137 (64.96%), Query Frame = 2
Query:   59 LAFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 469
            + FNV+ +A  D++RG V    ++ P   A  FT+QV+++ HP  +  GY PV  CHTS  A  F+EL  K+D RSG+  E+ P FLK GDA +  + PT+P+V+ET  + P LGRFAVRDM  TVA G++ SV+ K
Sbjct:  287 VGFNVRGIAKNDVRRGDVCGPIENPPT-VAEEFTAQVVVLQHPSVLSVGYTPVFHCHTSQTACMFTELNKKLDPRSGQVKEENPAFLKAGDAAICTITPTRPLVIETAKELPQLGRFAVRDMGMTVAAGLVLSVKAK 422          

HSP 2 Score: 40.4318 bits (93), Expect = 1.316e-35
Identity = 17/21 (80.95%), Postives = 18/21 (85.71%), Query Frame = 1
Query:    1 VKSVEMHHEALQEALPGDNVG 63
            VKS+EMHHE   EALPGDNVG
Sbjct:  268 VKSIEMHHEEFPEALPGDNVG 288          
BLAST of BQ623508 vs. ExPASy Swiss-Prot
Match: EF1A_PYRWO (Elongation factor 1-alpha OS=Pyrococcus woesei GN=tuf PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.714e-35
Identity = 58/138 (42.03%), Postives = 94/138 (68.12%), Query Frame = 2
Query:   59 LAFNVKNVAVKDLKRGFVASNSKDDPA--REAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 466
            + FNV+ V+  D+KRG VA ++ + P   R    F +Q+I++NHP  I  GY+PVL  HT+ + V+F +L+ K+D ++G  +E+ P+F+K GDA +V + P KP+V+E   + P LGRFA+RDM  T+A G++ S+++
Sbjct:  291 IGFNVRGVSKNDIKRGDVAGHTTNPPTVVRTKDTFKAQIIVLNHPTAITVGYSPVLHAHTAQVPVRFEQLLAKLDPKTGNIVEENPQFIKTGDAAIVILRPMKPVVLEPVKEIPQLGRFAIRDMGMTIAAGMVISIQR 428          

HSP 2 Score: 42.743 bits (99), Expect = 1.714e-35
Identity = 17/21 (80.95%), Postives = 20/21 (95.24%), Query Frame = 1
Query:    1 VKSVEMHHEALQEALPGDNVG 63
            VKS+EMHHE L+EALPGDN+G
Sbjct:  272 VKSIEMHHEPLEEALPGDNIG 292          
The following BLAST results are available for this feature:
BLAST of BQ623508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
EF1A_THECE3.915e-3845.00Elongation factor 1-alpha OS=Thermococcus celer GN... [more]
EF1A_PYRKO1.914e-3745.00Elongation factor 1-alpha OS=Pyrococcus kodakaraen... [more]
EF1A_THEGJ5.512e-3744.29Elongation factor 1-alpha OS=Thermococcus gammatol... [more]
EF1A_ARCFU7.181e-3747.33Elongation factor 1-alpha OS=Archaeoglobus fulgidu... [more]
EF1A_METHJ1.587e-3646.72Elongation factor 1-alpha OS=Methanospirillum hung... [more]
EF1A_PYRHO4.570e-3642.75Elongation factor 1-alpha OS=Pyrococcus horikoshii... [more]
EF1A_METJA5.953e-3646.38Elongation factor 1-alpha OS=Methanocaldococcus ja... [more]
EF1A_PYRAB7.754e-3643.48Elongation factor 1-alpha OS=Pyrococcus abyssi GN=... [more]
EF1A_METLZ1.316e-3546.72Elongation factor 1-alpha OS=Methanocorpusculum la... [more]
EF1A_PYRWO1.714e-3542.03Elongation factor 1-alpha OS=Pyrococcus woesei GN=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00599 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00599 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623508 ID=BQ623508; Name=BQ623508; organism=Citrus sinensis; type=EST; length=649bp
GTTAAGTCTGTTGAGATGCACCACGAAGCTCTGCAGGAGGCCCTTCCGGG
TGACAATGTTGGCCTTCAACGTGAAGAACGTTGCTGTCAAGGATCTCAAG
CGTGGTTTTGTTGCTTCCAACTCGAAGGATGATCCGGCCAGGGAAGCTGC
CAACTTCACTTCACAGGTCATCATCATGAACCATCCTGGCCAGATTGGAA
ATGGATATGCCCCAGTGCTTGACTGCCACACCTCCCACATTGCCGTCAAG
TTTTCTGAGCTCGTGACGAAGATTGATAGGCGATCAGGCAAGGAGCTTGA
GAAGGAGCCCAAGTTCTTGAAGAATGGAGATGCCGGAATGGTTAAGATGA
TTCCCACCAAGCCCATGGTTGTTGAGACATTCTCCGACTACCCACCCCTT
GGTCGTTTTGCTGTTAGGGACATGCGTCAGACTGTTGCTGTGGGTGTTAT
CAAGAGTGTTGAGAAGAAGGATCCCACAGGTGCCAAGGTCACCAAGTCCG
CAGCCAAGAAGAAATGAGAAATTTTTATGGGTCTGTCTACAATAGTTAGG
GTTTATTTTCTGGCTTTTTTATTTTCTTTTCTGGTTTTGGTTTGCATCAA
TGTTTCTGCAAACAGCCCTATTTGCTTCCACCAGTTTGCTGGTGAGCAT
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