BQ623508

Overview
NameBQ623508
Unique NameBQ623508
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length649
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623508 vs. ExPASy Swiss-Prot
Match: EF1A_METB6 (Elongation factor 1-alpha OS=Methanoregula boonei (strain 6A8) GN=tuf PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 1.090e-34
Identity = 63/137 (45.99%), Postives = 88/137 (64.23%), Query Frame = 2
Query:   59 LAFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 469
            + FNV+ +A  D++RG V   ++  P   A  FT+QV+++ HP  I  GY PV  CHT+  A  F EL  K+D RSG+  E+ P FLK GDA +V++ PTKPMV+E   + P LGRFAVRDM  T+A G+  +++ K
Sbjct:  287 VGFNVRGIAKGDIRRGDVCGPAEQPPT-VADEFTAQVVVLQHPSAITVGYTPVFHCHTTQTACTFIELKKKLDPRSGQTKEENPTFLKTGDAAIVQIKPTKPMVIENVKELPQLGRFAVRDMGSTIAAGMCIAIQPK 422          

HSP 2 Score: 38.5058 bits (88), Expect = 1.090e-34
Identity = 14/21 (66.67%), Postives = 19/21 (90.48%), Query Frame = 1
Query:    1 VKSVEMHHEALQEALPGDNVG 63
            +KS+EMHHE + +A+PGDNVG
Sbjct:  268 IKSIEMHHEEIPQAVPGDNVG 288          
BLAST of BQ623508 vs. ExPASy Swiss-Prot
Match: EF1A_THEVO (Elongation factor 1-alpha OS=Thermoplasma volcanium GN=tuf PE=3 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 1.090e-34
Identity = 61/137 (44.53%), Postives = 87/137 (63.50%), Query Frame = 2
Query:   59 LAFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 469
            + FNV+ +A  D+KRG V  +  D P      FT+Q++++NHP  I  GY PV   HT+ +A K  E+V  ++ + G  L+ +P F+K GD  +VK+IP KP+V+E  S+ P LGRFAVRDM QTVA G    +EK+
Sbjct:  289 IGFNVRGIAKNDIKRGDVCGHL-DSPPTVVRAFTAQIVVLNHPSVIAPGYKPVFHVHTAQVACKIDEIVRTLNPKDGTTLKDKPDFIKTGDIAIVKVIPDKPLVIEKVSEIPQLGRFAVRDMGQTVAAGQCIDLEKR 424          

HSP 2 Score: 40.0466 bits (92), Expect = 1.090e-34
Identity = 16/21 (76.19%), Postives = 19/21 (90.48%), Query Frame = 1
Query:    1 VKSVEMHHEALQEALPGDNVG 63
            VKS+EMHHE LQ+A PGDN+G
Sbjct:  270 VKSIEMHHEPLQQAEPGDNIG 290          
BLAST of BQ623508 vs. ExPASy Swiss-Prot
Match: EF1A_THEPD (Elongation factor 1-alpha OS=Thermofilum pendens (strain Hrk 5) GN=tuf PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.420e-34
Identity = 60/138 (43.48%), Postives = 92/138 (66.67%), Query Frame = 2
Query:   59 LAFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 472
            + FNVK V    L+RG VA ++ + P   A  FT ++ ++ HP  I  GY PVL  HT+ + V F EL+ K+D R+G   E++P+++K GD+ +V+  P KP+VVE +S++PPLGRFA+RD  +T+A GV+  V+K +
Sbjct:  295 IGFNVKGVEKSQLRRGDVAGHTTNPPT-VAEEFTGRIFVLYHPTAIAAGYTPVLHIHTATVPVTFEELLQKLDPRTGSVAEEKPQYIKQGDSAIVRFKPRKPVVVEKYSEFPPLGRFAIRDSGRTIAAGVVIDVKKAE 431          

HSP 2 Score: 38.5058 bits (88), Expect = 1.420e-34
Identity = 15/21 (71.43%), Postives = 18/21 (85.71%), Query Frame = 1
Query:    1 VKSVEMHHEALQEALPGDNVG 63
            VKS+E HH  LQEA+PGDN+G
Sbjct:  276 VKSIETHHTPLQEAIPGDNIG 296          
BLAST of BQ623508 vs. ExPASy Swiss-Prot
Match: EF1A_DESMO (Elongation factor 1-alpha OS=Desulfurococcus mobilis GN=tuf PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.849e-34
Identity = 65/135 (48.15%), Postives = 92/135 (68.15%), Query Frame = 2
Query:   59 LAFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVE 463
            + FNVK V  KD+KRG VA  S D P   A  FT+++++M HP  I  GY PV+  HT+ +A + +E++ KID R+GKE+EK P FLK GD  +VK  P KP+VVE +SD+  LGRFA+RDM +T+ +G +  ++
Sbjct:  297 IGFNVKGVEKKDIKRGDVAG-SLDVPPTVADEFTARIMVMWHPTAIAVGYTPVIHVHTASVACRITEIIAKIDPRTGKEIEKNPHFLKQGDIAIVKFKPIKPLVVEKYSDFQGLGRFAMRDMGKTIGIGQVLEIK 430          

HSP 2 Score: 31.9574 bits (71), Expect = 1.849e-34
Identity = 11/21 (52.38%), Postives = 17/21 (80.95%), Query Frame = 1
Query:    1 VKSVEMHHEALQEALPGDNVG 63
            VK++E HH  +++A PGDN+G
Sbjct:  278 VKTIETHHTKIEKAEPGDNIG 298          
BLAST of BQ623508 vs. ExPASy Swiss-Prot
Match: EF1A_IGNH4 (Elongation factor 1-alpha OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=tuf PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.408e-34
Identity = 61/135 (45.19%), Postives = 90/135 (66.67%), Query Frame = 2
Query:   59 LAFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVE 463
            + FNV+ V+  D+KRG VA + ++ P   A  FT++V ++ HP  I  GY PV+  HT+ +A +  E+  KID R+GK +E+ P FLK GDA +V   P KPMV+E F ++ PLGRFA+RDM +TV +G++  V+
Sbjct:  299 IGFNVRGVSKNDIKRGDVAGHPENPPT-VADQFTARVFVIWHPSAIAVGYTPVIHAHTASVASRIIEIKQKIDPRTGKVIEENPSFLKPGDAAVVVFKPLKPMVIEKFQEFQPLGRFAMRDMGKTVGIGIVTDVK 432          

HSP 2 Score: 38.891 bits (89), Expect = 2.408e-34
Identity = 13/21 (61.90%), Postives = 20/21 (95.24%), Query Frame = 1
Query:    1 VKSVEMHHEALQEALPGDNVG 63
            V+S+EMHHE +++A+PGDN+G
Sbjct:  280 VRSIEMHHEKIEQAMPGDNIG 300          
BLAST of BQ623508 vs. ExPASy Swiss-Prot
Match: EF1A_METVS (Elongation factor 1-alpha OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=tuf PE=3 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 2.409e-34
Identity = 63/138 (45.65%), Postives = 92/138 (66.67%), Query Frame = 2
Query:   59 LAFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 472
            + FNV+ V  KD+KRG V  ++ + P   A +FT+Q++++ HP  +  GY PV   HT+ IA  F+E+  K++  +G+ LE+ P FLK GDA +VK+IPTKPMV+E+  + P LGRFA+RDM  TVA G+   V  K+
Sbjct:  291 IGFNVRGVGKKDIKRGDVLGHTTNPPT-VATDFTAQIVVLQHPSVLTVGYTPVFHTHTAQIACTFAEIQKKLNPATGEVLEENPDFLKAGDAAIVKLIPTKPMVIESVKEIPQLGRFAIRDMGMTVAAGMAIQVTAKN 427          

HSP 2 Score: 35.8094 bits (81), Expect = 2.409e-34
Identity = 14/21 (66.67%), Postives = 17/21 (80.95%), Query Frame = 1
Query:    1 VKSVEMHHEALQEALPGDNVG 63
            +K+VEMHHE L  A PGDN+G
Sbjct:  272 IKTVEMHHEQLPSAEPGDNIG 292          
BLAST of BQ623508 vs. ExPASy Swiss-Prot
Match: EF1A_METS3 (Elongation factor 1-alpha OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=tuf PE=3 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 2.410e-34
Identity = 63/130 (48.46%), Postives = 84/130 (64.62%), Query Frame = 2
Query:   59 LAFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGV 448
            + FNV+ V   D++RG VA +  D PA  A  F +Q++++ HPG I  GY PV  CHTS +A  F EL  K+D  +G+  E+ P FLK G+A  VK+ PTKPMV+E     P +GRFA+RDM QTVA G+
Sbjct:  277 IGFNVRGVGKNDIRRGDVAGHVDDAPA-VAKEFDAQIVVLQHPGVITVGYTPVFHCHTSQVACTFLELTAKLDPATGQVAEENPDFLKTGNAAFVKVKPTKPMVIENAKKIPQMGRFAIRDMGQTVAAGL 405          

HSP 2 Score: 36.5798 bits (83), Expect = 2.410e-34
Identity = 14/21 (66.67%), Postives = 17/21 (80.95%), Query Frame = 1
Query:    1 VKSVEMHHEALQEALPGDNVG 63
            VKS+EMHHE  + A PGDN+G
Sbjct:  258 VKSIEMHHETFETAEPGDNIG 278          
BLAST of BQ623508 vs. ExPASy Swiss-Prot
Match: EF1A_GIALA (Elongation factor 1-alpha (Fragment) OS=Giardia lamblia GN=TEF1 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 2.411e-34
Identity = 60/120 (50.00%), Postives = 83/120 (69.17%), Query Frame = 2
Query:   59 LAFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVR 418
            + FNV+ +AVKDLK+G+V  +  +DP     +FT+QVI+MNHP +I  GY PV+DCHT+HIA +F   + K+D+R+ K   + P     GD  +VKM+P KP+  ETF+DY PLG FAVR
Sbjct:  277 VGFNVRGLAVKDLKKGYVVGDVTNDPPVGCKSFTAQVIVMNHPKKIQPGYTPVIDCHTAHIACQFQLFLQKLDKRTLKPEMENPPDAGRGDCIIVKMVPQKPLCCETFNDYAPLGPFAVR 396          

HSP 2 Score: 38.5058 bits (88), Expect = 2.411e-34
Identity = 17/21 (80.95%), Postives = 19/21 (90.48%), Query Frame = 1
Query:    1 VKSVEMHHEALQEALPGDNVG 63
            VKSVEMHHE L++A PGDNVG
Sbjct:  258 VKSVEMHHEELKKAGPGDNVG 278          
BLAST of BQ623508 vs. ExPASy Swiss-Prot
Match: EF1A_METPE (Elongation factor 1-alpha OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=tuf PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 3.138e-34
Identity = 62/137 (45.26%), Postives = 90/137 (65.69%), Query Frame = 2
Query:   59 LAFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 469
            + FNV+ V   D++RG V   + D P   A  FT+Q++++ HP  I  GY PV  CHT+ IA  F EL  K+D RSG+  E+ P FLK+GDA +V++ P++PMV+E+  + P LGRFA+RDM  T+A G+  +V+ K
Sbjct:  287 VGFNVRGVGKNDIRRGDVCGPA-DIPPTVADEFTAQIVVLQHPSAITVGYTPVFHCHTAQIACTFVELRKKLDPRSGQTKEENPTFLKSGDAAIVQIKPSRPMVIESVKEIPQLGRFAIRDMGTTIAAGMCIAVQPK 422          

HSP 2 Score: 38.1206 bits (87), Expect = 3.138e-34
Identity = 15/21 (71.43%), Postives = 18/21 (85.71%), Query Frame = 1
Query:    1 VKSVEMHHEALQEALPGDNVG 63
            +KS+EMHHE   +ALPGDNVG
Sbjct:  268 IKSIEMHHEEQPQALPGDNVG 288          
BLAST of BQ623508 vs. ExPASy Swiss-Prot
Match: EF1A_METM7 (Elongation factor 1-alpha OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=tuf PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 4.087e-34
Identity = 63/138 (45.65%), Postives = 92/138 (66.67%), Query Frame = 2
Query:   59 LAFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 472
            + FNV+ V  KD+KRG V  ++ + P   AA+FT+Q++++ HP  +  GY PV   HT+ IA  F EL  K++  +G+ LE+ P FLK GDA +VK++PTKP+V+E+  + P LGRFA+RDM  TVA G+   V  K+
Sbjct:  291 IGFNVRGVGKKDIKRGDVLGHTTNPPT-VAADFTAQIVVLQHPSVMTVGYTPVFHAHTAQIACTFMELQKKLNPATGEVLEENPDFLKAGDAAIVKLMPTKPLVIESVKEIPQLGRFAIRDMGMTVAAGMAIQVTAKN 427          

HSP 2 Score: 35.8094 bits (81), Expect = 4.087e-34
Identity = 14/21 (66.67%), Postives = 17/21 (80.95%), Query Frame = 1
Query:    1 VKSVEMHHEALQEALPGDNVG 63
            +K+VEMHHE L  A PGDN+G
Sbjct:  272 IKTVEMHHEQLPSAEPGDNIG 292          
The following BLAST results are available for this feature:
BLAST of BQ623508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
EF1A_METB61.090e-3445.99Elongation factor 1-alpha OS=Methanoregula boonei ... [more]
EF1A_THEVO1.090e-3444.53Elongation factor 1-alpha OS=Thermoplasma volcaniu... [more]
EF1A_THEPD1.420e-3443.48Elongation factor 1-alpha OS=Thermofilum pendens (... [more]
EF1A_DESMO1.849e-3448.15Elongation factor 1-alpha OS=Desulfurococcus mobil... [more]
EF1A_IGNH42.408e-3445.19Elongation factor 1-alpha OS=Ignicoccus hospitalis... [more]
EF1A_METVS2.409e-3445.65Elongation factor 1-alpha OS=Methanococcus vanniel... [more]
EF1A_METS32.410e-3448.46Elongation factor 1-alpha OS=Methanobrevibacter sm... [more]
EF1A_GIALA2.411e-3450.00Elongation factor 1-alpha (Fragment) OS=Giardia la... [more]
EF1A_METPE3.138e-3445.26Elongation factor 1-alpha OS=Methanosphaerula palu... [more]
EF1A_METM74.087e-3445.65Elongation factor 1-alpha OS=Methanococcus maripal... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00599 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00599 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623508 ID=BQ623508; Name=BQ623508; organism=Citrus sinensis; type=EST; length=649bp
GTTAAGTCTGTTGAGATGCACCACGAAGCTCTGCAGGAGGCCCTTCCGGG
TGACAATGTTGGCCTTCAACGTGAAGAACGTTGCTGTCAAGGATCTCAAG
CGTGGTTTTGTTGCTTCCAACTCGAAGGATGATCCGGCCAGGGAAGCTGC
CAACTTCACTTCACAGGTCATCATCATGAACCATCCTGGCCAGATTGGAA
ATGGATATGCCCCAGTGCTTGACTGCCACACCTCCCACATTGCCGTCAAG
TTTTCTGAGCTCGTGACGAAGATTGATAGGCGATCAGGCAAGGAGCTTGA
GAAGGAGCCCAAGTTCTTGAAGAATGGAGATGCCGGAATGGTTAAGATGA
TTCCCACCAAGCCCATGGTTGTTGAGACATTCTCCGACTACCCACCCCTT
GGTCGTTTTGCTGTTAGGGACATGCGTCAGACTGTTGCTGTGGGTGTTAT
CAAGAGTGTTGAGAAGAAGGATCCCACAGGTGCCAAGGTCACCAAGTCCG
CAGCCAAGAAGAAATGAGAAATTTTTATGGGTCTGTCTACAATAGTTAGG
GTTTATTTTCTGGCTTTTTTATTTTCTTTTCTGGTTTTGGTTTGCATCAA
TGTTTCTGCAAACAGCCCTATTTGCTTCCACCAGTTTGCTGGTGAGCAT
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