BQ623508

Overview
NameBQ623508
Unique NameBQ623508
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length649
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623508 vs. ExPASy Swiss-Prot
Match: EF1A_SULAC (Elongation factor 1-alpha OS=Sulfolobus acidocaldarius GN=tuf PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.321e-34
Identity = 68/137 (49.64%), Postives = 94/137 (68.61%), Query Frame = 2
Query:   59 LAFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 469
            + FNV+ V  KD+KRG VA  S  +P   A  FT+QVI++ HP  +G GY PVL  HT+ IA + SE+ ++ID ++GKE EK P+F+K GD+ +VK  P K +V E F ++P LGRFA+RDM +TV VGVI  V+ +
Sbjct:  295 IGFNVRGVEKKDVKRGDVAG-SVQNPPTVADEFTAQVIVIWHPTAVGVGYTPVLHVHTASIACRVSEITSRIDPKTGKEAEKNPQFIKAGDSAIVKFKPIKELVAEKFREFPALGRFAMRDMGKTVGVGVIIDVKPR 430          

HSP 2 Score: 31.187 bits (69), Expect = 5.321e-34
Identity = 11/21 (52.38%), Postives = 16/21 (76.19%), Query Frame = 1
Query:    1 VKSVEMHHEALQEALPGDNVG 63
            V+S+E HH  + +A PGDN+G
Sbjct:  276 VRSIETHHTKIDKAEPGDNIG 296          
BLAST of BQ623508 vs. ExPASy Swiss-Prot
Match: EF1A_METMP (Elongation factor 1-alpha OS=Methanococcus maripaludis GN=tuf PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 6.932e-34
Identity = 63/138 (45.65%), Postives = 92/138 (66.67%), Query Frame = 2
Query:   59 LAFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 472
            + FNV+ V  KD+KRG V  ++ + P   AA+FT+Q++++ HP  +  GY PV   HT+ IA  F EL  K++  +G+ LE+ P FLK GDA +VK++PTKP+V+E+  + P LGRFA+RDM  TVA G+   V  K+
Sbjct:  291 IGFNVRGVGKKDIKRGDVLGHTTNPPT-VAADFTAQIVVLQHPSVMTVGYTPVFHAHTAQIACTFMELQKKLNPATGEVLEENPDFLKAGDAAIVKLMPTKPLVMESVKEIPQLGRFAIRDMGMTVAAGMAIQVTAKN 427          

HSP 2 Score: 35.8094 bits (81), Expect = 6.932e-34
Identity = 14/21 (66.67%), Postives = 17/21 (80.95%), Query Frame = 1
Query:    1 VKSVEMHHEALQEALPGDNVG 63
            +K+VEMHHE L  A PGDN+G
Sbjct:  272 IKTVEMHHEQLPSAEPGDNIG 292          
BLAST of BQ623508 vs. ExPASy Swiss-Prot
Match: EF1A_METM6 (Elongation factor 1-alpha OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=tuf PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 6.932e-34
Identity = 63/138 (45.65%), Postives = 92/138 (66.67%), Query Frame = 2
Query:   59 LAFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 472
            + FNV+ V  KD+KRG V  ++ + P   AA+FT+Q++++ HP  +  GY PV   HT+ IA  F EL  K++  +G+ LE+ P FLK GDA +VK++PTKP+V+E+  + P LGRFA+RDM  TVA G+   V  K+
Sbjct:  291 IGFNVRGVGKKDIKRGDVLGHTTNPPT-VAADFTAQIVVLQHPSVMTVGYTPVFHAHTAQIACTFMELQKKLNPATGEVLEENPDFLKAGDAAIVKLMPTKPLVMESVKEIPQLGRFAIRDMGMTVAAGMAIQVTAKN 427          

HSP 2 Score: 35.8094 bits (81), Expect = 6.932e-34
Identity = 14/21 (66.67%), Postives = 17/21 (80.95%), Query Frame = 1
Query:    1 VKSVEMHHEALQEALPGDNVG 63
            +K+VEMHHE L  A PGDN+G
Sbjct:  272 IKTVEMHHEQLPSAEPGDNIG 292          
BLAST of BQ623508 vs. ExPASy Swiss-Prot
Match: EF1A_METM5 (Elongation factor 1-alpha OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=tuf PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 6.932e-34
Identity = 63/138 (45.65%), Postives = 92/138 (66.67%), Query Frame = 2
Query:   59 LAFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKKD 472
            + FNV+ V  KD+KRG V  ++ + P   AA+FT+Q++++ HP  +  GY PV   HT+ IA  F EL  K++  +G+ LE+ P FLK GDA +VK++PTKP+V+E+  + P LGRFA+RDM  TVA G+   V  K+
Sbjct:  291 IGFNVRGVGKKDIKRGDVLGHTTNPPT-VAADFTAQIVVLQHPSVMTVGYTPVFHAHTAQIACTFMELQKKLNPATGEVLEENPDFLKAGDAAIVKLMPTKPLVMESVKEIPQLGRFAIRDMGMTVAAGMAIQVTAKN 427          

HSP 2 Score: 35.8094 bits (81), Expect = 6.932e-34
Identity = 14/21 (66.67%), Postives = 17/21 (80.95%), Query Frame = 1
Query:    1 VKSVEMHHEALQEALPGDNVG 63
            +K+VEMHHE L  A PGDN+G
Sbjct:  272 IKTVEMHHEQLPSAEPGDNIG 292          
BLAST of BQ623508 vs. ExPASy Swiss-Prot
Match: EF1A_METBF (Elongation factor 1-alpha OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=tuf PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 1.176e-33
Identity = 60/137 (43.80%), Postives = 88/137 (64.23%), Query Frame = 2
Query:   59 LAFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEKK 469
            + +NV+ +   D++RG V  ++ D+P + A  F  Q++++ HP  I  GY PV   HTS IA +  EL  K+D +SG+  E+ P FLK GDA +V + PTKPMV+E   + P LGRFA+RDM  T+A G+  SV++K
Sbjct:  287 IGWNVRGIGKADVRRGDVCGHT-DNPPKVADTFVGQIVVLQHPSAITAGYTPVFHAHTSQIACQLIELNKKLDPKSGQVKEENPTFLKAGDAAIVTIKPTKPMVIEPVKEIPQLGRFAIRDMGMTIAAGMCMSVKQK 422          

HSP 2 Score: 39.6614 bits (91), Expect = 1.176e-33
Identity = 15/21 (71.43%), Postives = 19/21 (90.48%), Query Frame = 1
Query:    1 VKSVEMHHEALQEALPGDNVG 63
            VKS+EMHHE + +ALPGDN+G
Sbjct:  268 VKSIEMHHEEIPQALPGDNIG 288          
BLAST of BQ623508 vs. ExPASy Swiss-Prot
Match: EF1A_STAMF (Elongation factor 1-alpha OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=tuf PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 2.597e-33
Identity = 62/135 (45.93%), Postives = 95/135 (70.37%), Query Frame = 2
Query:   59 LAFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVE 463
            + FNV+ V+ +D++RG VA +  D+P   A  FT++V I+ HP  I  GY PV+  HT+ +A +  E+  K+D R+GK +E+ P+F+K GDA +V+  P KP+VVE +SD+PPLGRFA+RDM +T+ +GV+  V+
Sbjct:  296 IGFNVRGVSKRDIRRGDVAGHL-DNPPTVAEEFTARVFIIWHPTAITVGYTPVIHIHTASVASRIVEIKAKLDPRTGKVVEENPQFIKMGDAAIVRFKPIKPLVVEKYSDFPPLGRFAMRDMGKTIGIGVVVDVK 429          

HSP 2 Score: 31.5722 bits (70), Expect = 2.597e-33
Identity = 11/21 (52.38%), Postives = 17/21 (80.95%), Query Frame = 1
Query:    1 VKSVEMHHEALQEALPGDNVG 63
            V+S+E HH  +++A PGDN+G
Sbjct:  277 VRSIETHHVRIEKAEPGDNIG 297          
BLAST of BQ623508 vs. ExPASy Swiss-Prot
Match: EF1A_PYRAE (Elongation factor 1-alpha OS=Pyrobaculum aerophilum GN=tuf PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.735e-33
Identity = 60/135 (44.44%), Postives = 94/135 (69.63%), Query Frame = 2
Query:   59 LAFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVE 463
            +  NV+ +A +D+KRG V     + P   A    ++++++ HP  IG GYAPV+  HT+ + V+ +ELV+K+D R+G+ +E++P+F+K GD  +VK+ P KP+V E FSD+PPLGRFA+RDM +T+A G I  V+
Sbjct:  304 IGVNVRGIAKEDVKRGDVLGKPDNVPT-VAEEIVARIVVLWHPTAIGPGYAPVMHIHTATVPVQITELVSKLDPRTGQAVEQKPQFIKQGDVAIVKIKPLKPVVAEKFSDFPPLGRFALRDMGRTIAAGQILEVK 437          

HSP 2 Score: 33.4982 bits (75), Expect = 5.735e-33
Identity = 12/22 (54.55%), Postives = 18/22 (81.82%), Query Frame = 1
Query:    1 VKSVEMHHEALQEALPGDNVGL 66
            V+S+E HH  L++A PGDN+G+
Sbjct:  285 VRSIETHHMKLEQAQPGDNIGV 306          
BLAST of BQ623508 vs. ExPASy Swiss-Prot
Match: EF1A_METTP (Elongation factor 1-alpha OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=tuf PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 7.475e-33
Identity = 55/134 (41.04%), Postives = 86/134 (64.18%), Query Frame = 2
Query:   59 LAFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSV 460
            + +NV+ +   D++RG V  +  D+P   A  FT+Q++++ HP  I  GY PV  CHT+ +A   +E+  K+D R+G   E+ P F+K GDA ++ + PTKPMV+E   + P LGRFA+RDM  T+A G+ ++V
Sbjct:  289 IGWNVRGIGKNDIRRGDVCGHV-DNPPTVAKEFTAQIVVLQHPSAISAGYTPVFHCHTAQVACTITEIKAKLDPRTGSVKEQNPAFIKTGDAAIISVRPTKPMVIEKVKEIPQLGRFAIRDMGMTIAAGMCQNV 421          

HSP 2 Score: 36.1946 bits (82), Expect = 7.475e-33
Identity = 13/21 (61.90%), Postives = 18/21 (85.71%), Query Frame = 1
Query:    1 VKSVEMHHEALQEALPGDNVG 63
            VKS+E+HH+ + EA PGDN+G
Sbjct:  270 VKSIEIHHQEIPEAYPGDNIG 290          
BLAST of BQ623508 vs. ExPASy Swiss-Prot
Match: EF1A_METST (Elongation factor 1-alpha OS=Methanosphaera stadtmanae (strain DSM 3091) GN=tuf PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 9.738e-33
Identity = 58/130 (44.62%), Postives = 84/130 (64.62%), Query Frame = 2
Query:   59 LAFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGV 448
            + FNV+ V   D+KRG VA  +++ P+  A  F +Q++++ HPG +  GY PV   HT+ +A  F  L  K+D  +G+  E+ P FLK GDA +V + PTKPMV+E   + P +GRFA+RDM QTVA G+
Sbjct:  277 VGFNVRGVGKNDIKRGDVAGTTQNPPS-VAKEFKAQIVVLQHPGVMTVGYTPVFHAHTAQVACTFLSLDVKLDPATGQPKEENPDFLKTGDAALVTIKPTKPMVIENIKEIPHMGRFAIRDMGQTVAAGM 405          

HSP 2 Score: 38.5058 bits (88), Expect = 9.738e-33
Identity = 16/21 (76.19%), Postives = 18/21 (85.71%), Query Frame = 1
Query:    1 VKSVEMHHEALQEALPGDNVG 63
            VKS+EMHHE L +A PGDNVG
Sbjct:  258 VKSIEMHHEVLDKAEPGDNVG 278          
BLAST of BQ623508 vs. ExPASy Swiss-Prot
Match: EF1A_PICTO (Elongation factor 1-alpha OS=Picrophilus torridus GN=tuf PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.647e-32
Identity = 55/136 (40.44%), Postives = 86/136 (63.24%), Query Frame = 2
Query:   59 LAFNVKNVAVKDLKRGFVASNSKDDPAREAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSDYPPLGRFAVRDMRQTVAVGVIKSVEK 466
            + FNV+ +A  +LKRG V   + + P      FT+Q++++NHP  I  GY PV   HT+ +A +  E+V  I+ + G  L+++P F+K GD  +VK++P + +V+E  S++P LGRFA+RDM  TVA G    +EK
Sbjct:  289 IGFNVRGIAKNELKRGDVCGPANNPPT-VVKGFTAQIVVLNHPSVIAAGYKPVFHVHTAQVACRIDEIVKTINPKDGTTLKEKPDFIKTGDIAIVKVVPDRALVIEKVSEFPQLGRFAIRDMGMTVAAGQCIDLEK 423          

HSP 2 Score: 38.891 bits (89), Expect = 3.647e-32
Identity = 15/21 (71.43%), Postives = 19/21 (90.48%), Query Frame = 1
Query:    1 VKSVEMHHEALQEALPGDNVG 63
            VKS+EMHHE +Q+A PGDN+G
Sbjct:  270 VKSIEMHHEPMQQAGPGDNIG 290          
The following BLAST results are available for this feature:
BLAST of BQ623508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
EF1A_SULAC5.321e-3449.64Elongation factor 1-alpha OS=Sulfolobus acidocalda... [more]
EF1A_METMP6.932e-3445.65Elongation factor 1-alpha OS=Methanococcus maripal... [more]
EF1A_METM66.932e-3445.65Elongation factor 1-alpha OS=Methanococcus maripal... [more]
EF1A_METM56.932e-3445.65Elongation factor 1-alpha OS=Methanococcus maripal... [more]
EF1A_METBF1.176e-3343.80Elongation factor 1-alpha OS=Methanosarcina barker... [more]
EF1A_STAMF2.597e-3345.93Elongation factor 1-alpha OS=Staphylothermus marin... [more]
EF1A_PYRAE5.735e-3344.44Elongation factor 1-alpha OS=Pyrobaculum aerophilu... [more]
EF1A_METTP7.475e-3341.04Elongation factor 1-alpha OS=Methanosaeta thermoph... [more]
EF1A_METST9.738e-3344.62Elongation factor 1-alpha OS=Methanosphaera stadtm... [more]
EF1A_PICTO3.647e-3240.44Elongation factor 1-alpha OS=Picrophilus torridus ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00599 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00599 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623508 ID=BQ623508; Name=BQ623508; organism=Citrus sinensis; type=EST; length=649bp
GTTAAGTCTGTTGAGATGCACCACGAAGCTCTGCAGGAGGCCCTTCCGGG
TGACAATGTTGGCCTTCAACGTGAAGAACGTTGCTGTCAAGGATCTCAAG
CGTGGTTTTGTTGCTTCCAACTCGAAGGATGATCCGGCCAGGGAAGCTGC
CAACTTCACTTCACAGGTCATCATCATGAACCATCCTGGCCAGATTGGAA
ATGGATATGCCCCAGTGCTTGACTGCCACACCTCCCACATTGCCGTCAAG
TTTTCTGAGCTCGTGACGAAGATTGATAGGCGATCAGGCAAGGAGCTTGA
GAAGGAGCCCAAGTTCTTGAAGAATGGAGATGCCGGAATGGTTAAGATGA
TTCCCACCAAGCCCATGGTTGTTGAGACATTCTCCGACTACCCACCCCTT
GGTCGTTTTGCTGTTAGGGACATGCGTCAGACTGTTGCTGTGGGTGTTAT
CAAGAGTGTTGAGAAGAAGGATCCCACAGGTGCCAAGGTCACCAAGTCCG
CAGCCAAGAAGAAATGAGAAATTTTTATGGGTCTGTCTACAATAGTTAGG
GTTTATTTTCTGGCTTTTTTATTTTCTTTTCTGGTTTTGGTTTGCATCAA
TGTTTCTGCAAACAGCCCTATTTGCTTCCACCAGTTTGCTGGTGAGCAT
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