BQ623510

Overview
NameBQ623510
Unique NameBQ623510
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length578
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623510 vs. ExPASy Swiss-Prot
Match: UB2L6_HUMAN (Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Homo sapiens GN=UBE2L6 PE=1 SV=4)

HSP 1 Score: 105.145 bits (261), Expect = 2.488e-22
Identity = 54/150 (36.00%), Postives = 85/150 (56.67%), Query Frame = 3
Query:   78 IMASKRILKELKDLQKDPPTSC-SAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYAM 521
            +MAS R++KEL+DLQK PP    +      ++  W A ++ P   PY    F + I FPP+YPFKPP + F TK++HPN++ NG ICL I+  E W P     +VL ++  L+  PN  +PL  ++A +   +   +   A  +T ++ +
Sbjct:    1 MMASMRVVKELEDLQKKPPPYLRNLSSDDANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSENWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFGV 149          
BLAST of BQ623510 vs. ExPASy Swiss-Prot
Match: UB2R2_RABIT (Ubiquitin-conjugating enzyme E2 R2 OS=Oryctolagus cuniculus GN=UBE2R2 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.249e-22
Identity = 52/141 (36.88%), Postives = 78/141 (55.32%), Query Frame = 3
Query:   84 ASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK 464
            + K ++ ELK LQ++P        V E D+++W+  I GPP++ Y GG F   I FP DYP+ PP   F TK++HPNI  NG +C+ IL              E+W+P   +  +LLS+ SLL +PN   P   + + M++
Sbjct:    9 SQKALMLELKSLQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMFR 149          
BLAST of BQ623510 vs. ExPASy Swiss-Prot
Match: UB2R2_MOUSE (Ubiquitin-conjugating enzyme E2 R2 OS=Mus musculus GN=Ube2r2 PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.249e-22
Identity = 52/141 (36.88%), Postives = 78/141 (55.32%), Query Frame = 3
Query:   84 ASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK 464
            + K ++ ELK LQ++P        V E D+++W+  I GPP++ Y GG F   I FP DYP+ PP   F TK++HPNI  NG +C+ IL              E+W+P   +  +LLS+ SLL +PN   P   + + M++
Sbjct:    9 SQKALMLELKSLQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMFR 149          
BLAST of BQ623510 vs. ExPASy Swiss-Prot
Match: UB2R2_HUMAN (Ubiquitin-conjugating enzyme E2 R2 OS=Homo sapiens GN=UBE2R2 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.249e-22
Identity = 52/141 (36.88%), Postives = 78/141 (55.32%), Query Frame = 3
Query:   84 ASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK 464
            + K ++ ELK LQ++P        V E D+++W+  I GPP++ Y GG F   I FP DYP+ PP   F TK++HPNI  NG +C+ IL              E+W+P   +  +LLS+ SLL +PN   P   + + M++
Sbjct:    9 SQKALMLELKSLQEEPVEGFRITLVDESDLYNWEVAIFGPPNTLYEGGYFKAHIKFPIDYPYSPPTFRFLTKMWHPNIYENGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMFR 149          
BLAST of BQ623510 vs. ExPASy Swiss-Prot
Match: UB2R1_MOUSE (Ubiquitin-conjugating enzyme E2 R1 OS=Mus musculus GN=Cdc34 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.249e-22
Identity = 53/144 (36.81%), Postives = 78/144 (54.17%), Query Frame = 3
Query:   84 ASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDK 473
            + K +L ELK LQ++P        V E D+++W+  I GPP++ Y GG F   + FP DYP+ PP   F TK++HPNI   G +C+ IL              E+W+P   +  +LLS+ SLL +PN   P   + + MY+  K
Sbjct:    9 SQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWK 152          
BLAST of BQ623510 vs. ExPASy Swiss-Prot
Match: UB2R1_HUMAN (Ubiquitin-conjugating enzyme E2 R1 OS=Homo sapiens GN=CDC34 PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 3.249e-22
Identity = 53/144 (36.81%), Postives = 78/144 (54.17%), Query Frame = 3
Query:   84 ASKRILKELKDLQKDPPTSCSAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-------------KEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDK 473
            + K +L ELK LQ++P        V E D+++W+  I GPP++ Y GG F   + FP DYP+ PP   F TK++HPNI   G +C+ IL              E+W+P   +  +LLS+ SLL +PN   P   + + MY+  K
Sbjct:    9 SQKALLLELKGLQEEPVEGFRVTLVDEGDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWK 152          
BLAST of BQ623510 vs. ExPASy Swiss-Prot
Match: UBC_ASFP4 (Ubiquitin-conjugating enzyme E2 OS=African swine fever virus (isolate Tick/South Africa/Pretoriuskop Pr4/1996) GN=UBC PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.244e-22
Identity = 50/136 (36.76%), Postives = 79/136 (58.09%), Query Frame = 3
Query:   81 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDIL-----KEQ---WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK 464
            M S+ ++ E + L ++P  +        +M  W   + GP D+ Y GG+F   I FPP+YP++PP++ F ++++HPNI S+G +C+ IL     +EQ   WSP   I  +LLS+ SLL +PN D P   + A  Y+
Sbjct:    1 MVSRFLMAEYRHLTENPSENFKVSVNENNMTEWDVILKGPADTLYEGGLFKAKIGFPPNYPYEPPRLTFTSEMWHPNIYSDGRVCISILHGDNAEEQGMTWSPVQKIDTILLSVISLLNEPNTDSPANVDAAKSYR 136          
BLAST of BQ623510 vs. ExPASy Swiss-Prot
Match: UBC84_DROME (Ubiquitin-conjugating enzyme E2-18 kDa OS=Drosophila melanogaster GN=Ubc84D PE=1 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 4.244e-22
Identity = 49/147 (33.33%), Postives = 85/147 (57.82%), Query Frame = 3
Query:   84 ASKRILKELKDL-QKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK-EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 518
            A++R+ +EL DL +    T  +     E +  W   ++ P  +PY  G F + I+FPP YPF PPK+ F+TK++HPN++  G +CL I+  + W P     +VL ++ +++ +P P+ PL  ++A  +  +  K+  TA  +T+K A
Sbjct:    3 ATRRLTRELSDLVEAKMSTLRNIESSDESLLMWTGLLV-PEKAPYNKGAFRIEINFPPQYPFMPPKILFKTKIYHPNVDEKGEVCLPIISTDNWKPTTRTEQVLQALVAIVHNPEPEHPLRSDLAEEFVREHKKFMKTAEEFTKKNA 148          
BLAST of BQ623510 vs. ExPASy Swiss-Prot
Match: UBE2C_HUMAN (Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens GN=UBE2C PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.239e-22
Identity = 51/129 (39.53%), Postives = 75/129 (58.14%), Query Frame = 3
Query:   90 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKA 476
            KR+ +EL  L        SA P ++++F W  TI G   + Y    + +++ FP  YP+  P V F T  +HPN+++ G+ICLDILKE+WS    +  +LLSI SLL +PN D PL    A ++K+  A
Sbjct:   33 KRLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWKNPTA 161          
BLAST of BQ623510 vs. ExPASy Swiss-Prot
Match: UBE2C_XENLA (Ubiquitin-conjugating enzyme E2 C OS=Xenopus laevis GN=ube2c PE=1 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.235e-21
Identity = 50/129 (38.76%), Postives = 77/129 (59.69%), Query Frame = 3
Query:   90 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKA 476
            KR+ +EL  L        SA P ++++F W  TI G   + Y    + +++ FP  YP+  P V F T  FHPN++S+G+ICLDILK++WS    +  +LLS+ SLL +PN + PL P  A ++++  A
Sbjct:   33 KRLQQELMTLMMSGDKGISAFPESDNLFKWIGTIDGAVGTVYEDLRYKLSLEFPSGYPYNAPTVKFVTPCFHPNVDSHGNICLDILKDKWSALYDVRTILLSLQSLLGEPNNESPLNPYAAELWQNQTA 161          
The following BLAST results are available for this feature:
BLAST of BQ623510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
UB2L6_HUMAN2.488e-2236.00Ubiquitin/ISG15-conjugating enzyme E2 L6 OS=Homo s... [more]
UB2R2_RABIT3.249e-2236.88Ubiquitin-conjugating enzyme E2 R2 OS=Oryctolagus ... [more]
UB2R2_MOUSE3.249e-2236.88Ubiquitin-conjugating enzyme E2 R2 OS=Mus musculus... [more]
UB2R2_HUMAN3.249e-2236.88Ubiquitin-conjugating enzyme E2 R2 OS=Homo sapiens... [more]
UB2R1_MOUSE3.249e-2236.81Ubiquitin-conjugating enzyme E2 R1 OS=Mus musculus... [more]
UB2R1_HUMAN3.249e-2236.81Ubiquitin-conjugating enzyme E2 R1 OS=Homo sapiens... [more]
UBC_ASFP44.244e-2236.76Ubiquitin-conjugating enzyme E2 OS=African swine f... [more]
UBC84_DROME4.244e-2233.33Ubiquitin-conjugating enzyme E2-18 kDa OS=Drosophi... [more]
UBE2C_HUMAN7.239e-2239.53Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens ... [more]
UBE2C_XENLA1.235e-2138.76Ubiquitin-conjugating enzyme E2 C OS=Xenopus laevi... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00601 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00601 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623510 ID=BQ623510; Name=BQ623510; organism=Citrus sinensis; type=EST; length=578bp
TTGCCCTCCGATCTCCTTCTTCGCCGCACAAGATCCTAGGTTTGTTGTAG
CTTTAACTTTTAATAATCCGTTGAAGCATCATGGCTTCGAAGCGTATTTT
GAAGGAACTCAAGGATTTGCAGAAGGATCCTCCCACGTCTTGCAGCGCCG
GTCCGGTGGCTGAAGACATGTTCCACTGGCAAGCAACAATTATGGGCCCC
CCTGATAGTCCATATGCAGGAGGTGTATTTTTGGTTACCATTCATTTTCC
TCCGGATTATCCCTTCAAGCCCCCAAAGGTTGCTTTTAGGACCAAGGTCT
TCCACCCAAACATCAACAGCAATGGAAGCATATGTCTTGATATCCTTAAA
GAACAGTGGAGCCCAGCTCTTACCATTTCAAAGGTCCTGCTTTCTATCTG
CTCGTTGCTTACTGACCCAAATCCTGACGACCCGCTTGTACCGGAGATTG
CTCACATGTACAAGTCCGACAAGGCCAAATATGAAGCCACTGCCAGGAGC
TGGACACAGAAGTATGCCATGGGATTAGTTGTTTGGATATTGCAGAAATG
GAACTATTTATATGAAATATGTGGGGTT
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