BQ623510

Overview
NameBQ623510
Unique NameBQ623510
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length578
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623510 vs. ExPASy Swiss-Prot
Match: UBE2W_DICDI (Probable ubiquitin-conjugating enzyme E2 W OS=Dictyostelium discoideum GN=ube2w PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.012e-15
Identity = 47/110 (42.73%), Postives = 63/110 (57.27%), Query Frame = 3
Query:   87 SKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAF-RTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLT 413
            +KR+ KEL DL+ +PP  C +    +++  W   + G   S Y G  F +   F   YP   P+V F  T   HP+I SNG ICL IL + WSPALT+S V LSI S+L+
Sbjct:    6 AKRLQKELLDLKTNPPP-CISITEGDNLDKWVIAVDGTEGSIYQGEHFKLQFKFSSGYPLDSPEVIFIGTPPIHPHIYSNGHICLSILYDNWSPALTVSSVCLSILSMLS 114          
BLAST of BQ623510 vs. ExPASy Swiss-Prot
Match: UBE2F_HUMAN (NEDD8-conjugating enzyme UBE2F OS=Homo sapiens GN=UBE2F PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.012e-15
Identity = 49/150 (32.67%), Postives = 72/150 (48.00%), Query Frame = 3
Query:   90 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 518
            K ++KE+ +L+ + P +C       +  H     + P +  Y GG F      P  Y   PPKV   TK++HPNI   G ICL +L+E       W+P  T+  V+  + SL TD  N DDPL  E A  +  DK  +      + ++YA
Sbjct:   35 KLLVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYA 184          
BLAST of BQ623510 vs. ExPASy Swiss-Prot
Match: UBC12_YEAST (NEDD8-conjugating enzyme UBC12 OS=Saccharomyces cerevisiae GN=UBC12 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 1.727e-15
Identity = 37/103 (35.92%), Postives = 58/103 (56.31%), Query Frame = 3
Query:  189 IMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKSDKAKYEATAR 497
            I+ P +  Y  G     + F   YP +PPKV    K+FHPNI+  G++CL+IL+E WSPAL +  ++  +  L  +PNP+DPL  + A +    + ++    R
Sbjct:   67 IVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVR 169          
BLAST of BQ623510 vs. ExPASy Swiss-Prot
Match: UBE2W_MOUSE (Probable ubiquitin-conjugating enzyme E2 W OS=Mus musculus GN=Ube2w PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.256e-15
Identity = 46/112 (41.07%), Postives = 60/112 (53.57%), Query Frame = 3
Query:   90 KRILKELKDLQKDPPTSCSAGP--VAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTK--VFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLT 413
            KR+ KEL  LQ DPP   +     V   +  W   + G P + Y G  F +   F   YPF  P+V F  +    HP++ SNG ICL IL E WSPAL++  V LSI S+L+
Sbjct:    6 KRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPIHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLS 117          
BLAST of BQ623510 vs. ExPASy Swiss-Prot
Match: UBE2W_HUMAN (Probable ubiquitin-conjugating enzyme E2 W OS=Homo sapiens GN=UBE2W PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.946e-15
Identity = 46/112 (41.07%), Postives = 60/112 (53.57%), Query Frame = 3
Query:   90 KRILKELKDLQKDPPTSCSAGP--VAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVF--HPNINSNGSICLDILKEQWSPALTISKVLLSICSLLT 413
            KR+ KEL  LQ DPP   +     V   +  W   + G P + Y G  F +   F   YPF  P+V F  +    HP++ SNG ICL IL E WSPAL++  V LSI S+L+
Sbjct:    6 KRLQKELLALQNDPPPGMTLNEKSVQNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTEDWSPALSVQSVCLSIISMLS 117          
BLAST of BQ623510 vs. ExPASy Swiss-Prot
Match: UBE2F_BOVIN (NEDD8-conjugating enzyme UBE2F OS=Bos taurus GN=UBE2F PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.946e-15
Identity = 47/148 (31.76%), Postives = 71/148 (47.97%), Query Frame = 3
Query:   96 ILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 518
            ++KE+ +L+ + P +C       +  H     + P +  Y GG F      P  Y   PPKV   T+++HPNI   G ICL +L+E       W+P  T+  V+  + SL TD  N DDPL  E A  +  DK  +      + ++YA
Sbjct:   37 LVKEVAELEANLPCTCKVHFPDPNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTRIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVEDYIKRYA 184          
BLAST of BQ623510 vs. ExPASy Swiss-Prot
Match: UB2FB_MOUSE (NEDD8-conjugating enzyme UBE2F-B OS=Mus musculus GN=Ube2fb PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.847e-15
Identity = 49/153 (32.03%), Postives = 72/153 (47.06%), Query Frame = 3
Query:   81 MASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ------WSPALTISKVLLSICSLLTD-PNPDDPLVPEIAHMYKSDKAKYEATARSWTQKYA 518
            M  K ++ E+ +L+ + P +C       +  H     + P +  Y GG F   I  P  Y   PPKV   TK++HPNI   G ICL +L+E       W+P  T+  V+  + SL TD  N  DPL  E A  +  DK  +      + ++YA
Sbjct:   32 MRDKLLVTEVAELEANLPWTCKVHFPDPNKLHCFQLTVSPDEGYYQGGNFQFEIEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSADGTGWAPTRTLKDVVWGLNSLFTDLLNFYDPLNIEAAEHHLQDKEDFRDKVDEYIRRYA 184          
BLAST of BQ623510 vs. ExPASy Swiss-Prot
Match: UBCX_YEAST (Ubiquitin-conjugating enzyme E2-21 kDa OS=Saccharomyces cerevisiae GN=PEX4 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.025e-15
Identity = 52/151 (34.44%), Postives = 79/151 (52.32%), Query Frame = 3
Query:   93 RILKE----LKDLQKDPPTSC-------SAGPVAE-DMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAF-RTKVFHPNINS-NGSICLDILK-EQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYK-SDKAKYEATAR 497
            RI+KE    LK L  D P +        S  P+ E D+  W+A I GP D+PY    F + I  P  YP  PPK++F +  + H N+ S  G ICL+ILK E+W+P   +   + ++  LL +P  D PL  +I ++ +  D + Y+   +
Sbjct:   21 RIVKEYKVILKTLASDDPIANPYRGIIESLNPIDETDLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEEWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIRCGDMSAYQGIVK 171          
BLAST of BQ623510 vs. ExPASy Swiss-Prot
Match: UBC6_KLULA (Ubiquitin-conjugating enzyme E2 6 OS=Kluyveromyces lactis GN=UBC6 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.025e-15
Identity = 41/116 (35.34%), Postives = 61/116 (52.59%), Query Frame = 3
Query:   75 SIMASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICL---DILKEQWSPALTISKVLLSICSLLT 413
            SI A+KR+ KE K++  +PP    A P  +++  W   I GPP +PY  G +  T+ FP DYPF PP +   T   +     N  +CL   D   E W+PA ++  +L  + S +T
Sbjct:    3 SIQANKRLTKEYKNIVNNPPPFIIAAPHEDNILEWHYVITGPPSTPYENGQYHGTLTFPSDYPFNPPAIRMITP--NGRFKENTRLCLSMSDYHPEAWNPAWSVVTILNGLLSFMT 116          
BLAST of BQ623510 vs. ExPASy Swiss-Prot
Match: UBC32_ARATH (Ubiquitin carrier protein E2 32 OS=Arabidopsis thaliana GN=UBC32 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 5.025e-15
Identity = 42/117 (35.90%), Postives = 65/117 (55.56%), Query Frame = 3
Query:   84 ASKRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVTIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILK---EQWSPALTISKVLLSICSLL-TDPN 422
            A KRIL+E+K++Q +P     + P+ E++F WQ  I GP D+ + GG++   I  P DYPFKPP     T   +    +N  ICL I     E W P+ ++   L+++ + + T PN
Sbjct:   12 AVKRILQEVKEMQANPSDDFMSLPLEENIFEWQFAIRGPGDTEFEGGIYHGRIQLPADYPFKPPSFMLLTP--NGRFETNTKICLSISNYHPEHWQPSWSVRTALVALIAFMPTSPN 126          
The following BLAST results are available for this feature:
BLAST of BQ623510 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
UBE2W_DICDI1.012e-1542.73Probable ubiquitin-conjugating enzyme E2 W OS=Dict... [more]
UBE2F_HUMAN1.012e-1532.67NEDD8-conjugating enzyme UBE2F OS=Homo sapiens GN=... [more]
UBC12_YEAST1.727e-1535.92NEDD8-conjugating enzyme UBC12 OS=Saccharomyces ce... [more]
UBE2W_MOUSE2.256e-1541.07Probable ubiquitin-conjugating enzyme E2 W OS=Mus ... [more]
UBE2W_HUMAN2.946e-1541.07Probable ubiquitin-conjugating enzyme E2 W OS=Homo... [more]
UBE2F_BOVIN2.946e-1531.76NEDD8-conjugating enzyme UBE2F OS=Bos taurus GN=UB... [more]
UB2FB_MOUSE3.847e-1532.03NEDD8-conjugating enzyme UBE2F-B OS=Mus musculus G... [more]
UBCX_YEAST5.025e-1534.44Ubiquitin-conjugating enzyme E2-21 kDa OS=Saccharo... [more]
UBC6_KLULA5.025e-1535.34Ubiquitin-conjugating enzyme E2 6 OS=Kluyveromyces... [more]
UBC32_ARATH5.025e-1535.90Ubiquitin carrier protein E2 32 OS=Arabidopsis tha... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00601 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00601 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623510 ID=BQ623510; Name=BQ623510; organism=Citrus sinensis; type=EST; length=578bp
TTGCCCTCCGATCTCCTTCTTCGCCGCACAAGATCCTAGGTTTGTTGTAG
CTTTAACTTTTAATAATCCGTTGAAGCATCATGGCTTCGAAGCGTATTTT
GAAGGAACTCAAGGATTTGCAGAAGGATCCTCCCACGTCTTGCAGCGCCG
GTCCGGTGGCTGAAGACATGTTCCACTGGCAAGCAACAATTATGGGCCCC
CCTGATAGTCCATATGCAGGAGGTGTATTTTTGGTTACCATTCATTTTCC
TCCGGATTATCCCTTCAAGCCCCCAAAGGTTGCTTTTAGGACCAAGGTCT
TCCACCCAAACATCAACAGCAATGGAAGCATATGTCTTGATATCCTTAAA
GAACAGTGGAGCCCAGCTCTTACCATTTCAAAGGTCCTGCTTTCTATCTG
CTCGTTGCTTACTGACCCAAATCCTGACGACCCGCTTGTACCGGAGATTG
CTCACATGTACAAGTCCGACAAGGCCAAATATGAAGCCACTGCCAGGAGC
TGGACACAGAAGTATGCCATGGGATTAGTTGTTTGGATATTGCAGAAATG
GAACTATTTATATGAAATATGTGGGGTT
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