BQ623511

Overview
NameBQ623511
Unique NameBQ623511
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length675
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623511 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 1.793e-79
Identity = 136/185 (73.51%), Postives = 149/185 (80.54%), Query Frame = 1
Query:   64 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPG 612
            AGLSADPE FA+NR LEVIH RWAMLGALGCVFPE+L K  GV+F E VWFKAG+QIFSEGGLDYLGNPNL+HAQSILA+   QV+LMG VEG+RI                  FDPLGLADDP  FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL+DH+ DPVANNAW +AT F PG
Sbjct:   83 AGLSADPEAFARNRALEVIHGRWAMLGALGCVFPEVLQKWVGVEFKEPVWFKAGSQIFSEGGLDYLGNPNLVHAQSILAVLGFQVLLMGLVEGFRINGLDGVGEGNDLYPGGQYFDPLGLADDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANNAWVFATKFAPG 267          

HSP 2 Score: 46.2098 bits (108), Expect = 1.793e-79
Identity = 19/27 (70.37%), Postives = 20/27 (74.07%), Query Frame = 3
Query:    3 SEQTPSYLTGEFPGDYGWDTCWFISRP 83
            S QTPSYL GEFPGDYGWDT    + P
Sbjct:   63 SAQTPSYLNGEFPGDYGWDTAGLSADP 89          
BLAST of BQ623511 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 268.855 bits (686), Expect = 1.152e-78
Identity = 136/185 (73.51%), Postives = 147/185 (79.46%), Query Frame = 1
Query:   64 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPG 612
            AGLSADPE FAKNR LEVIH RWAMLGALGC+FPE+L K   V F E VWFKAG+QIFS+GGLDYLGNPNL+HAQSILA+   QVVLMG VEG+RI                  FDPLGLADDP  FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ +PVANNAW YAT FVPG
Sbjct:   80 AGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRINGLPGVGEGNDLYPGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPG 264          

HSP 2 Score: 46.2098 bits (108), Expect = 1.152e-78
Identity = 19/27 (70.37%), Postives = 20/27 (74.07%), Query Frame = 3
Query:    3 SEQTPSYLTGEFPGDYGWDTCWFISRP 83
            S QTPSYL GEFPGDYGWDT    + P
Sbjct:   60 SAQTPSYLNGEFPGDYGWDTAGLSADP 86          
BLAST of BQ623511 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 1.960e-78
Identity = 129/182 (70.88%), Postives = 150/182 (82.42%), Query Frame = 1
Query:   64 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVP 609
            AGLSADPETF + RELE+IH+RWAMLGALGC  PE+L+K+G KFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQ+I+A  A QV+LMG +EGYR+                +FDPLGLADDPD FAELKVKE+KNGRLA FSMFGFFVQAIVTGKGP++NL DH+A+P  NNA+A+AT F P
Sbjct:   70 AGLSADPETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNNAFAFATKFTP 251          

HSP 2 Score: 43.8986 bits (102), Expect = 1.960e-78
Identity = 17/24 (70.83%), Postives = 19/24 (79.17%), Query Frame = 3
Query:   12 TPSYLTGEFPGDYGWDTCWFISRP 83
            TP+YLTGEFPGDYGWDT    + P
Sbjct:   53 TPAYLTGEFPGDYGWDTAGLSADP 76          
BLAST of BQ623511 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 1.958e-75
Identity = 132/183 (72.13%), Postives = 146/183 (79.78%), Query Frame = 1
Query:   64 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKN-GVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVP 609
            AGLSADPETF K RELEVIH+RWA+LGALG + PE+LS   GVKFGE VWFKAGAQIFSEGGLDYLG+P LIHAQ+I+A  A QVVLMG +EGYR+                +FDPLGLADDPD FAELKVKE+KNGRLAMFS FGFFVQAIVTGKGPI+NL DH+ADP  NNA+A AT F P
Sbjct:   72 AGLSADPETFKKYRELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADPGTNNAFAAATKFTP 254          

HSP 2 Score: 45.0542 bits (105), Expect = 1.958e-75
Identity = 18/27 (66.67%), Postives = 20/27 (74.07%), Query Frame = 3
Query:    3 SEQTPSYLTGEFPGDYGWDTCWFISRP 83
            S  TP+YLTGEFPGDYGWDT    + P
Sbjct:   52 STNTPAYLTGEFPGDYGWDTAGLSADP 78          
BLAST of BQ623511 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 4.728e-71
Identity = 129/183 (70.49%), Postives = 142/183 (77.60%), Query Frame = 1
Query:   64 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPG 612
            AGLSA PETFAKNRELEVIHSR AM  ALGC+FPE+LS  G  FGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIW  +V+LMG VEGYRI                +FD LGLA+D + FAELKVKELKNGRLAMFSMFGFFVQAIV+ K  +ENL DH+   V NNA +  TNFVPG
Sbjct:   86 AGLSAYPETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRI-ARGPLGEVTDPLYPGSFDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHLGWTVNNNALSNVTNFVPG 267          

HSP 2 Score: 43.8986 bits (102), Expect = 4.728e-71
Identity = 18/27 (66.67%), Postives = 20/27 (74.07%), Query Frame = 3
Query:    3 SEQTPSYLTGEFPGDYGWDTCWFISRP 83
            S + PSYLTGEFPGDYGWDT    + P
Sbjct:   66 SGEWPSYLTGEFPGDYGWDTAGLSAYP 92          
BLAST of BQ623511 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 8.779e-70
Identity = 123/186 (66.13%), Postives = 143/186 (76.88%), Query Frame = 1
Query:   64 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKN-GVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXA--FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPG 612
            AGLSADP+TFA+ RE+E+IH+RWA+LGALG + PE+LS+  GV+FGE VWFKAGAQIF++GGL+YLGN +LIHAQSI+A  A QVVLMG  E YR                    FDPLGLADDPD FAELKVKE+KNGRLAMFS  GFFVQAIVTGKGP++NL DH+ADP  N A+A AT F PG
Sbjct:   67 AGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNKAFASATKFTPG 252          

HSP 2 Score: 43.8986 bits (102), Expect = 8.779e-70
Identity = 17/25 (68.00%), Postives = 19/25 (76.00%), Query Frame = 3
Query:   12 TPSYLTGEFPGDYGWDTCWFISRPR 86
            TP YLTGEFPGDYGWDT    + P+
Sbjct:   50 TPEYLTGEFPGDYGWDTAGLSADPQ 74          
BLAST of BQ623511 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 9.569e-69
Identity = 124/184 (67.39%), Postives = 146/184 (79.35%), Query Frame = 1
Query:   64 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILS-KNGVKFGEA-VWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVP 609
            AGLSADPETF + RELE+IH+R  +LGALG V PE+L+ ++G+KFG+A +WFKAGA IF +GGL+YLGNP+LIHAQ+I+A  A QVVLMG VEGYR+                AFDPLGLADDPD FAELKVKE+KNGRLAMF+  GFFVQAIVTGKGPIENL DH+A+P  NNA+AYAT F P
Sbjct:   89 AGLSADPETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRVNGGPAGEGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANPAENNAFAYATKFTP 272          

HSP 2 Score: 36.5798 bits (83), Expect = 9.569e-69
Identity = 15/25 (60.00%), Postives = 16/25 (64.00%), Query Frame = 3
Query:    9 QTPSYLTGEFPGDYGWDTCWFISRP 83
            Q P   TGEFPGDYGWDT    + P
Sbjct:   71 QHPRLPTGEFPGDYGWDTAGLSADP 95          
BLAST of BQ623511 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 255.758 bits (652), Expect = 1.563e-67
Identity = 124/150 (82.67%), Postives = 130/150 (86.67%), Query Frame = 1
Query:  166 EILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 615
            E+L KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMG +EGYR+                AFDPLGLADDP+  AELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENLYDH+ADPVANNAWAYATNFVPGK
Sbjct:    1 ELLVKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRVGGGPLGEGLDPLYPGDAFDPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 150          
BLAST of BQ623511 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 204.912 bits (520), Expect = 8.630e-61
Identity = 98/125 (78.40%), Postives = 105/125 (84.00%), Query Frame = 1
Query:   64 AGLSADPETFAKNRELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQF 438
            AGLSADPETFAKNRELEVIH RWAMLGALGCVFPE+L+KNGVKFGEAVWFKAG+QIF EGGLDYLGNPNL+HAQSILAIWACQVVLMG VEGYR+                AFDPLGLA+DP+ F
Sbjct:   81 AGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWACQVVLMGAVEGYRVGGGPLGEGLDQLYPGGAFDPLGLAEDPEAF 205          

HSP 2 Score: 50.447 bits (119), Expect = 8.630e-61
Identity = 21/27 (77.78%), Postives = 22/27 (81.48%), Query Frame = 3
Query:    3 SEQTPSYLTGEFPGDYGWDTCWFISRP 83
            SEQTPSYLTGEFPGDYGWDT    + P
Sbjct:   61 SEQTPSYLTGEFPGDYGWDTAGLSADP 87          
BLAST of BQ623511 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 6.389e-45
Identity = 88/116 (75.86%), Postives = 96/116 (82.76%), Query Frame = 1
Query:  268 NLIHAQSILAIWACQVVLMGFVEGYRIXXXXXXXXXXXXXXXXAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVANNAWAYATNFVPGK 615
            +L+HAQSILAIWACQVVLMG VEGYRI                +FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DHIADPV NNAWA+ATNFVPGK
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267          
The following BLAST results are available for this feature:
BLAST of BQ623511 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
CB23_HORVU1.793e-7973.51Chlorophyll a-b binding protein of LHCII type III,... [more]
CB23_SOLLC1.152e-7873.51Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB2_CHLRE1.960e-7870.88Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_CHLMO1.958e-7572.13Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_MALDO4.728e-7170.49Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB2_DUNTE8.779e-7066.13Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNSA9.569e-6967.39Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_PINSY1.563e-6782.67Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB21_SILPR8.630e-6178.40Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB2F_SOLLC6.389e-4575.86Chlorophyll a-b binding protein 3B, chloroplastic ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00602 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00602 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623511 ID=BQ623511; Name=BQ623511; organism=Citrus sinensis; type=EST; length=675bp
GCTCTGAGCAAACACCATCATACTTGACTGGTGAGTTCCCTGGTGACTAT
GGCTGGGATACCTGCTGGTTTATCAGCAGACCCCGAGACATTTGCTAAGA
ACCGTGAGCTAGAGGTGATCCACAGCAGATGGGCAATGCTTGGAGCTCTT
GGCTGCGTCTTCCCTGAAATCCTCTCCAAGAATGGAGTGAAGTTCGGCGA
AGCAGTTTGGTTCAAGGCTGGCGCTCAAATCTTCTCTGAAGGTGGCCTTG
ACTATCTTGGCAACCCCAACCTCATTCATGCTCAGAGCATTTTGGCTATC
TGGGCCTGCCAGGTTGTGCTCATGGGTTTTGTTGAAGGATACAGAATTGG
TGGCGGTCCTCTTGGTGAAGGACTTGACCCACTTTACCCTGGTGGTGCTT
TTGACCCACTTGGTTTGGCTGATGACCCCGATCAATTTGCTGAGTTGAAG
GTCAAGGAGCTCAAGAATGGCCGTCTGGCTATGTTCTCCATGTTTGGATT
CTTTGTTCAGGCTATTGTCACTGGGAAGGGTCCAATTGAGAACCTCTACG
ACCACATTGCTGATCCTGTGGCCAACAATGCCTGGGCTTATGCCACTAAC
TTTGTTCCCGGAAAGTGAAGAAACTATGACTTGATGGTGGCTGGTTCATC
TGTAACATTATTCTATCATCGGATG
back to top