BQ623525

Overview
NameBQ623525
Unique NameBQ623525
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2449 contig Csv1_Contig2449:480..1174. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623525 vs. ExPASy Swiss-Prot
Match: GLN13_ARATH (Glutamine synthetase cytosolic isozyme 1-3 OS=Arabidopsis thaliana GN=GLN1-3 PE=1 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 2.629e-65
Identity = 136/236 (57.63%), Postives = 157/236 (66.53%), Query Frame = 2
Query:    2 RHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGF*GY*ESN*ETWTEAQ*AHCRIW----*RQ*TPTHWQT*NS*HQHFQWGCC*PWGINPCWTRHRERR-KGYFEDRRPAFN 694
            RH AAKIFSH DV  EEPWYGIEQEYTL+QKDV WP+                   ADKA GRDIVD+HYKACLYAGI ISGINGEVMPGQWEFQVGP  GIS+GDQ+WVARY+LERITEI+GV++SFDPKP+ GDWNGAGAH NYSTK+MRNDGG     ++  +   + +  H   +     R+ T  H     +    F WG     G +    R  E+  KGYFEDRRPA N
Sbjct:  107 RHNAAKIFSHPDVAKEEPWYGIEQEYTLMQKDVNWPIGWPVGGYPGPQGPYYCGVGADKAIGRDIVDAHYKACLYAGIGISGINGEVMPGQWEFQVGPVEGISSGDQVWVARYLLERITEISGVIVSFDPKPVPGDWNGAGAHCNYSTKTMRNDGGLEVIKKAIGKLQLKHK-EHIAAYGEGNERRLTGKHE---TADINTFSWGVA-NRGASVRVGRDTEKEGKGYFEDRRPASN 337          
BLAST of BQ623525 vs. ExPASy Swiss-Prot
Match: GLNA3_MAIZE (Glutamine synthetase root isozyme 3 OS=Zea mays GN=GLN4 PE=1 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.225e-64
Identity = 132/240 (55.00%), Postives = 154/240 (64.17%), Query Frame = 2
Query:    2 RHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGF*GY*ESN*ETWTEAQ*AHCRIW*RQ*TPTHWQ----T*NS*HQ-----HFQWGCC*PWGINPCWTRHRERRKGYFEDRRPAFN 694
            R+ AAKIFS  +V AEEPWYGIEQEYTLLQKD  WPL                   A+K++GRDIVD+HYKACLYAGINISGINGEVMPGQWEFQVGP+VGIS+GDQ+WVARYILERITEIAGVV++FDPKPI GDWNGAGAH NYST+SMR +GG+            +A     ++  R+    + +         H+      F WG               +  KGYFEDRRPA N
Sbjct:  107 RYNAAKIFSSPEVAAEEPWYGIEQEYTLLQKDTNWPLGWPIGGFPGPQGPYYCGIGAEKSFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISSGDQVWVARYILERITEIAGVVVTFDPKPIPGDWNGAGAHTNYSTESMRKEGGY---------EVIKAAIEKLKLRHREHIAAYGEGNDGRLTGRHETADINTFSWGVANRGASVRVGRETEQNGKGYFEDRRPASN 337          
BLAST of BQ623525 vs. ExPASy Swiss-Prot
Match: GLNA_PINSY (Glutamine synthetase cytosolic isozyme OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 8.457e-64
Identity = 137/236 (58.05%), Postives = 153/236 (64.83%), Query Frame = 2
Query:    2 RHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGF*GY*ESN*ETWTEAQ*AHCRIW----*RQ*TPTHWQT*NS*HQHFQWGCC*PWGINPCWTRHRERR-KGYFEDRRPAFN 694
            R AAAKIF+   V  EE WYG+EQEYTLLQKDVKWPL                   ADKAWGRDIVD+HYKACLY+GINISGINGEVMPGQWEFQVGP+VGISA D+LW AR+I+ERITE AGVVLSFDPKPI+GDWNGAG H NYSTKSMR +GGF    +   E        H   +     R+ T  H     +    F WG     G +    R  E+  KGYFEDRRPA N
Sbjct:  108 RAAAAKIFNEKAVSDEETWYGLEQEYTLLQKDVKWPLGWPIGGYPGPQGPYYCGVGADKAWGRDIVDAHYKACLYSGINISGINGEVMPGQWEFQVGPSVGISAADELWCARFIMERITEKAGVVLSFDPKPIEGDWNGAGCHTNYSTKSMRKEGGF-EVIKKAIEKLKLRHKEHISAYGEGNERRLTGRHE---TADMNTFSWGVA-NRGASVRVGRDTEKEGKGYFEDRRPASN 338          
BLAST of BQ623525 vs. ExPASy Swiss-Prot
Match: GLN15_ARATH (Glutamine synthetase cytosolic isozyme 1-5 OS=Arabidopsis thaliana GN=GLN1-5 PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 5.481e-63
Identity = 132/236 (55.93%), Postives = 154/236 (65.25%), Query Frame = 2
Query:    2 RHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGF*GY*ESN*ETWTEAQ*AHCRIW----*RQ*TPTHWQT*NS*HQHFQWGCC*PWGINPCWTRHRERR-KGYFEDRRPAFN 694
            RH A KIF H +V AEEPW+GIEQEYTLL+KDVKWPL                   ADKA+GRDIVD+HYKACLY+G++I G NGEVMPGQWEFQ+ P VGI AGDQLWVARYILERITEI GV++SFDPKPIQGDWNGA AH N+STKSMR DGG     E+  +   + +  H   +     R+ T  H     +    F WG     G +    R  E+  KGYFEDRRP+ N
Sbjct:  107 RHKAVKIFDHPNVKAEEPWFGIEQEYTLLKKDVKWPLGWPLGGFPGPQGPYYCAVGADKAFGRDIVDAHYKACLYSGLSIGGANGEVMPGQWEFQISPTVGIGAGDQLWVARYILERITEICGVIVSFDPKPIQGDWNGAAAHTNFSTKSMRKDGGLDLIKEAIKKLEVKHK-QHIAAYGEGNERRLTGKHE---TADINTFSWGVA-DRGASVRVGRDTEKEGKGYFEDRRPSSN 337          
BLAST of BQ623525 vs. ExPASy Swiss-Prot
Match: GLNA_AMAMU (Glutamine synthetase OS=Amanita muscaria GN=GLN1 PE=2 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 3.825e-59
Identity = 84/156 (53.85%), Postives = 100/156 (64.10%), Query Frame = 2
Query:    2 RHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGG 469
            RH  AK+   +    E PW+GIEQEYTL   D   P                      K + RD++++HY+ACLYAG+NISGIN EVMP QWEFQVGP  GIS GD LW+ARY+L R+ E  GV +SF PKP+QGDWNGAGAH NYST +MR  GG
Sbjct:  109 RHHTAKVMELAK--DEIPWFGIEQEYTLFDADGS-PYGWPKGGFPGPQGPYYCGAGTGKVFARDLIEAHYRACLYAGVNISGINAEVMPSQWEFQVGPCEGISMGDHLWMARYLLIRVAEQWGVKVSFHPKPLQGDWNGAGAHTNYSTLAMREPGG 261          

HSP 2 Score: 78.5666 bits (192), Expect = 3.825e-59
Identity = 38/52 (73.08%), Postives = 41/52 (78.85%), Query Frame = 3
Query:  480 IKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFNGGVANRGASIRV 635
            I+ AIEKL  RH EHIA YGE NE RLTG+HET  I TF+ GVANRGASIRV
Sbjct:  265 IEAAIEKLAKRHDEHIAVYGEDNEMRLTGRHETGHIGTFSSGVANRGASIRV 316          
BLAST of BQ623525 vs. ExPASy Swiss-Prot
Match: GLNA_CANGA (Glutamine synthetase OS=Candida glabrata GN=GLN1 PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 1.105e-58
Identity = 88/160 (55.00%), Postives = 102/160 (63.75%), Query Frame = 2
Query:    2 RHAAAKIF-SHSDVVAEEPWYGIEQEYTLLQ---KDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGG 469
            RH A K+F +H D   EE W+GIEQEYTL         WP                    A K + RD++++HY+ACLYAGINISGIN EVMP QWEFQVGP  GIS GDQLW+ARY L R+ E  GV +SF PKP++GDWNGAG H N STK MR  GG
Sbjct:  111 RHEANKLFQAHKD---EEIWFGIEQEYTLFDMYDNVYAWP----KGGYPAPQGPYYCGVGAGKVYARDVIEAHYRACLYAGINISGINAEVMPSQWEFQVGPCEGISMGDQLWMARYFLHRVAEEFGVKISFHPKPLKGDWNGAGCHTNVSTKDMRVPGG 263          

HSP 2 Score: 76.2554 bits (186), Expect = 1.105e-58
Identity = 36/59 (61.02%), Postives = 45/59 (76.27%), Query Frame = 3
Query:  480 IKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFNGGVANRGASIRVGPDTEKE 656
            I++AIEKL  RH+EHI  YG  NE+RLTG+HETA + +F+ GVANRGASIR+     KE
Sbjct:  267 IEQAIEKLSKRHNEHIKLYGADNEQRLTGRHETASMTSFSSGVANRGASIRIPRPVAKE 325          
BLAST of BQ623525 vs. ExPASy Swiss-Prot
Match: GLNA_AGABI (Glutamine synthetase OS=Agaricus bisporus GN=glnA PE=3 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.105e-58
Identity = 83/156 (53.21%), Postives = 102/156 (65.38%), Query Frame = 2
Query:    2 RHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGG 469
            RH A K+F  +     EPW+G+EQEYTL   D + P                      K + RD++++HY+ACLYAGINISGIN EVMP QWEFQVGP  GIS GD LW+ARY+L RI E  GV +SF PKP++G+WNGAG H N+STK+MR  GG
Sbjct:  109 RHHAKKVFDEAK--EHEPWFGLEQEYTLFDADDQ-PYGWPKGGFPGPQGPYYCGAGTGKVFARDLIEAHYRACLYAGINISGINAEVMPSQWEFQVGPCEGISMGDHLWMARYLLVRIAEQWGVKVSFHPKPLKGEWNGAGCHTNFSTKAMREAGG 261          

HSP 2 Score: 75.485 bits (184), Expect = 1.105e-58
Identity = 36/52 (69.23%), Postives = 41/52 (78.85%), Query Frame = 3
Query:  480 IKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFNGGVANRGASIRV 635
            I+ AIEKL  RH EHIA YGE N+ RLTG+HET  I+ F+ GVANRGASIRV
Sbjct:  265 IEDAIEKLAKRHDEHIAVYGEDNDLRLTGRHETGHISNFSSGVANRGASIRV 316          
BLAST of BQ623525 vs. ExPASy Swiss-Prot
Match: GLNA_YARLI (Glutamine synthetase OS=Yarrowia lipolytica GN=GLN1 PE=3 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.645e-58
Identity = 81/159 (50.94%), Postives = 101/159 (63.52%), Query Frame = 2
Query:    2 RHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKD---VKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGG 469
            RH  AK+ S  +   E  W+GIEQEYT+  +    V WP                      K + RD+V++HY+ACLY+GINISGIN EVMP QWE+QVGP  GIS  D+LW++RY+L R+ E  G+ +SF PKP+QGDWNGAG H N STKSMR  GG
Sbjct:  102 RHECAKLMSAHE--KEVIWFGIEQEYTMFDESDNPVGWP----KGGFPAPQGPYYCGVGTGKVFARDVVEAHYRACLYSGINISGINAEVMPSQWEYQVGPCEGISMADELWMSRYLLHRVAEEFGIKISFHPKPLQGDWNGAGCHTNVSTKSMREPGG 254          

HSP 2 Score: 76.6406 bits (187), Expect = 1.645e-58
Identity = 36/59 (61.02%), Postives = 42/59 (71.19%), Query Frame = 3
Query:  480 IKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFNGGVANRGASIRVGPDTEKE 656
            I+ AIEKL  RH EHIA YGE N+ RLTG+HET  I +F+ GVANRG SIR+     KE
Sbjct:  258 IEAAIEKLAARHKEHIAVYGEDNDMRLTGRHETGSIGSFSSGVANRGCSIRIPRSVAKE 316          

HSP 3 Score: 25.7942 bits (55), Expect = 1.645e-58
Identity = 10/11 (90.91%), Postives = 10/11 (90.91%), Query Frame = 2
Query:  662 GYFEDRRPAFN 694
            GYFEDRRPA N
Sbjct:  319 GYFEDRRPASN 329          
BLAST of BQ623525 vs. ExPASy Swiss-Prot
Match: GLNA_HEBCY (Glutamine synthetase OS=Hebeloma cylindrosporum GN=GLN1 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.879e-58
Identity = 83/156 (53.21%), Postives = 100/156 (64.10%), Query Frame = 2
Query:    2 RHAAAKIFSHSDVVAEEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGG 469
            RH AAK+   +    + PW+G+EQEYTL   D   P                      K + RD++++HY+ACLY+GINISGIN EVMP QWEFQVGP  GIS GD LW+ARY+L RI E   V +SF PKP+QGDWNGAG H NYSTK+MR  GG
Sbjct:  109 RHHAAKVMEQAK--EDVPWFGLEQEYTLFDADGS-PYGWPKGGFPGPQGPYYCGAGTGKVFARDLIEAHYRACLYSGINISGINAEVMPSQWEFQVGPCEGISMGDHLWMARYLLVRIAEQWAVKVSFHPKPLQGDWNGAGCHTNYSTKAMREPGG 261          

HSP 2 Score: 75.8702 bits (185), Expect = 1.879e-58
Identity = 36/52 (69.23%), Postives = 41/52 (78.85%), Query Frame = 3
Query:  480 IKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFNGGVANRGASIRV 635
            I++AIEKL  RH EHIA YGE N+ RLTG+HET  I  F+ GVANRGASIRV
Sbjct:  265 IEEAIEKLSKRHDEHIAVYGEDNDLRLTGRHETGHIGAFSSGVANRGASIRV 316          
BLAST of BQ623525 vs. ExPASy Swiss-Prot
Match: GLNA_YEAST (Glutamine synthetase OS=Saccharomyces cerevisiae GN=GLN1 PE=1 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 2.044e-57
Identity = 86/160 (53.75%), Postives = 104/160 (65.00%), Query Frame = 2
Query:    2 RHAAAKIFS-HSDVVAEEPWYGIEQEYTL--LQKDVK-WPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGG 469
            RH AAK+F+ H D   EE W+G+EQEYTL  +  DV  WP                    A K + RD++++HY+ACLYAG+ ISGIN EVMP QWEFQVGP  GI  GDQLW+ARY L R+ E  G+ +SF PKP++GDWNGAG H N STK MR  GG
Sbjct:  111 RHEAAKLFAAHKD---EEIWFGLEQEYTLFDMYDDVYGWP----KGGYPAPQGPYYCGVGAGKVYARDMIEAHYRACLYAGLEISGINAEVMPSQWEFQVGPCTGIDMGDQLWMARYFLHRVAEEFGIKISFHPKPLKGDWNGAGCHTNVSTKEMRQPGG 263          

HSP 2 Score: 73.559 bits (179), Expect = 2.044e-57
Identity = 34/59 (57.63%), Postives = 43/59 (72.88%), Query Frame = 3
Query:  480 IKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFNGGVANRGASIRVGPDTEKE 656
            I++AIEKL  RH+EHI  YG  N+ RLTG+HETA +  F+ GVANRG+SIR+     KE
Sbjct:  267 IEQAIEKLSKRHAEHIKLYGSDNDMRLTGRHETASMTAFSSGVANRGSSIRIPRSVAKE 325          
The following BLAST results are available for this feature:
BLAST of BQ623525 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
GLN13_ARATH2.629e-6557.63Glutamine synthetase cytosolic isozyme 1-3 OS=Arab... [more]
GLNA3_MAIZE2.225e-6455.00Glutamine synthetase root isozyme 3 OS=Zea mays GN... [more]
GLNA_PINSY8.457e-6458.05Glutamine synthetase cytosolic isozyme OS=Pinus sy... [more]
GLN15_ARATH5.481e-6355.93Glutamine synthetase cytosolic isozyme 1-5 OS=Arab... [more]
GLNA_AMAMU3.825e-5953.85Glutamine synthetase OS=Amanita muscaria GN=GLN1 P... [more]
GLNA_CANGA1.105e-5855.00Glutamine synthetase OS=Candida glabrata GN=GLN1 P... [more]
GLNA_AGABI1.105e-5853.21Glutamine synthetase OS=Agaricus bisporus GN=glnA ... [more]
GLNA_YARLI1.645e-5850.94Glutamine synthetase OS=Yarrowia lipolytica GN=GLN... [more]
GLNA_HEBCY1.879e-5853.21Glutamine synthetase OS=Hebeloma cylindrosporum GN... [more]
GLNA_YEAST2.044e-5753.75Glutamine synthetase OS=Saccharomyces cerevisiae G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00616 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00616 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623525 ID=BQ623525; Name=BQ623525; organism=Citrus sinensis; type=EST; length=695bp
AAGACATGCAGCTGCCAAGATTTTCAGCCATTCTGACGTTGTGGCTGAAG
AACCATGGTATGGTATTGAGCAGGAATACACCTTACTGCAGAAGGATGTT
AAATGGCCTCTTGGCTGGCCCATCGGTGGTTATCCTGGGCCTCAGGGACC
ATACTACTGTGGTGTTGGTGCTGACAAAGCTTGGGGGCGCGACATTGTAG
ACTCCCATTACAAGGCCTGTCTATATGCAGGAATCAACATCAGTGGCATC
AATGGAGAAGTCATGCCGGGGCAGTGGGAGTTCCAAGTTGGTCCCGCTGT
TGGAATTTCTGCTGGAGATCAGTTGTGGGTTGCCCGCTATATTTTAGAGA
GGATTACAGAGATTGCTGGAGTTGTGCTTTCTTTCGATCCCAAGCCAATT
CAGGGTGACTGGAATGGAGCTGGTGCTCACGCAAATTACAGCACCAAGTC
GATGAGGAACGATGGAGGCTTTTGAGGGTATTAAGAAAGCAATTGAGAAA
CTTGGACTGAGGCACAGTGAGCACATTGCCGCATATGGTGAAGGCAATGA
ACGCCGACTCACTGGCAAACATGAAACAGCTGACATCAACACTTTCAATG
GGGGTGTTGCTAACCGTGGGGCATCAATCCGTGTTGGACCAGACACAGAG
AAAGAAGGAAGGGGTACTTTGAGGACAGGAGACCTGCTTTTAACA
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