BQ623525

Overview
NameBQ623525
Unique NameBQ623525
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length695
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623525 vs. ExPASy Swiss-Prot
Match: GLNA2_STRHY (Glutamine synthetase 2 OS=Streptomyces hygroscopicus GN=glnB PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 8.504e-41
Identity = 68/138 (49.28%), Postives = 85/138 (61.59%), Query Frame = 2
Query:   47 EEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXX-ADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMR 457
            +EP +GIEQEYT L+ D   PL                    AD  +GR+IV+ H   CL AG+ +SGIN EVMPGQWEFQVG    +   D +WVAR++L R+ E  GV  S D KP +GDWNGAGAH N+ST++MR
Sbjct:  102 QEPIFGIEQEYTFLKGDR--PLGFPEGGGYPAPQADYYCGVGADAIFGREIVEKHLDLCLAAGLGLSGINAEVMPGQWEFQVGALPPLEVSDHMWVARWLLHRVAEEFGVTASLDAKPAKGDWNGAGAHTNFSTRAMR 237          

HSP 2 Score: 50.447 bits (119), Expect = 8.504e-41
Identity = 28/66 (42.42%), Postives = 39/66 (59.09%), Query Frame = 3
Query:  465 EAFEGIKKAIEKLGL--RHSEHIAAYGEGNERRLTGKHETADINTFNGGVANRGASIRVGPDTEKE 656
            E ++ I  A E LG   +  EH+  YG G E RLTG HETA  + ++ G ++RGAS+R+    E E
Sbjct:  238 EGYDPIITACEALGQDDKPLEHVRQYGTGIEDRLTGAHETAPWDAYSYGASDRGASVRIPWQVEVE 303          

HSP 3 Score: 23.8682 bits (50), Expect = 8.504e-41
Identity = 9/13 (69.23%), Postives = 10/13 (76.92%), Query Frame = 2
Query:  656 RKGYFEDRRPAFN 694
            +KGY EDRRP  N
Sbjct:  304 KKGYIEDRRPNAN 316          
BLAST of BQ623525 vs. ExPASy Swiss-Prot
Match: GLNA_KLULA (Glutamine synthetase OS=Kluyveromyces lactis GN=GLN1 PE=3 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.314e-40
Identity = 103/243 (42.39%), Postives = 133/243 (54.73%), Query Frame = 2
Query:    2 RHAAAKIF-SHSDVVAEEPWYGIEQEYTLLQKDVK---WPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGF*GY*ESN*ETWTEAQ*AHCRIW----*RQ*TPTH----WQT*NS*HQHFQWGCC*PWGINPCWTRHRERRKGYFEDRRPAFN 694
            RH AAK+F +H D    E W+G+EQEYTL  +  +   WP                    A K + RD++++HY+ACLYAG+NISGIN EVMP QWEFQVGP  GI+  DQLW+ARY L R+ E  GV +S  PKP++GDWNGAG H N STK MR  GG   Y E   E  ++    H +++     ++ T  H      T +S   +       P  +N       +   GYFEDRRPA N
Sbjct:  113 RHEAAKLFEAHKDA---EMWFGLEQEYTLFDQYDQVYGWP----KGGFPAPQGPYYCGVGAGKVFARDVIEAHYRACLYAGVNISGINAEVMPSQWEFQVGPCEGIAMADQLWIARYFLHRVAEEFGVKVSLHPKPLKGDWNGAGCHTNVSTKLMRAPGGM-KYIEDAIEKLSKRHNEHIKLYGADNEQRLTGRHETASMSTFSSGVANRGASIRIPRSVN-------KEGYGYFEDRRPASN 340          
BLAST of BQ623525 vs. ExPASy Swiss-Prot
Match: GLNA_TUBBO (Glutamine synthetase OS=Tuber borchii GN=GLN1 PE=2 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 2.241e-40
Identity = 101/238 (42.44%), Postives = 128/238 (53.78%), Query Frame = 2
Query:    2 RHAAAKIF-SHSDVVAEEPWYGIEQEYTLLQ---KDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGGF*GY*ESN*ETWTEAQ*AHCRIW*RQ*T---PTHWQT*NS*HQHFQWGCC*PWGINPCWTRHRERRKGYFEDRRPAFN 694
            RH  AKI  +H D   ++PW+G+EQEYTL         WP                      K + RDIV++HYKACL+AGI ISGIN EV+P QWEFQVGP VGI  GD LW++RY+L R+ E  GV +SF PKPI GDWNG+G H N ST++MR++GG     E+  +  T     H  ++    T       +T N     F +G               +  KGYFEDRRPA N
Sbjct:  113 RHECAKIMEAHKD---QKPWFGLEQEYTLFDLYGNPYGWP----KGGFPGPQGPYYCGVGTGKVYCRDIVEAHYKACLFAGIKISGINAEVLPSQWEFQVGPCVGIEMGDHLWISRYLLHRVAEEFGVKISFHPKPIPGDWNGSGLHTNVSTQAMRDEGGMKAIEEAIQKLSTRHA-EHIAVYGDDNTLRLTGRHETGNI--DAFSYGVADRGSSIRIPRSCAKEGKGYFEDRRPASN 340          
BLAST of BQ623525 vs. ExPASy Swiss-Prot
Match: GLNA2_FRAAL (Glutamine synthetase 2 OS=Frankia alni GN=glnII PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 4.850e-40
Identity = 63/134 (47.01%), Postives = 77/134 (57.46%), Query Frame = 2
Query:   53 PWYGIEQEYTLLQ--KDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTK 448
            P +GIEQEYT  +  +   WP                      K  GR IV+ H +ACL AG+ I G N EVM GQWEFQ+G     + GDQ+W+ R++L RI E  GV +SF  KPI GDWNGAGAH N+STK
Sbjct:  103 PMFGIEQEYTFFKDGRPYGWP----EVGYPAPQGPYYCGVGGSKMPGRQIVERHTQACLDAGLAIEGTNAEVMMGQWEFQIGVLPAPAIGDQIWLGRWLLHRIAEDYGVEVSFAAKPIPGDWNGAGAHTNFSTK 232          

HSP 2 Score: 65.4698 bits (158), Expect = 4.850e-40
Identity = 32/65 (49.23%), Postives = 43/65 (66.15%), Query Frame = 3
Query:  459 TMEAFEGIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFNGGVANRGASIRVGPDTEK 653
            TME ++ I    E LG R +EH+  YG+G E RLTGKHETA  N ++ G ++RGAS+R+    EK
Sbjct:  234 TMEGWDAIVTCCEALGTRVTEHVTHYGKGIEDRLTGKHETAPWNKYSWGASDRGASVRIPWAVEK 298          
BLAST of BQ623525 vs. ExPASy Swiss-Prot
Match: GLNA_PANAR (Glutamine synthetase OS=Panulirus argus PE=2 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.112e-39
Identity = 76/141 (53.90%), Postives = 96/141 (68.09%), Query Frame = 2
Query:   47 EEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHANYSTKSMRNDGG 469
            + PW+G+EQEYTLL  D K PL                   A++ +GRD+V++HY+ACL AGINISG N +VMP QWEFQVGP  GI+ GD LW+ARY+L R+ E   VV++ DPKPI GDWNGAG H N+ST++MR   G
Sbjct:  124 QHPWFGMEQEYTLLDID-KHPLGWPKNGYPGPQGPYYCGVGANRVYGRDVVEAHYRACLCAGINISGENAKVMPAQWEFQVGPCEGITMGDDLWMARYLLHRVAEDFDVVVTLDPKPIPGDWNGAGMHTNFSTEAMRGPNG 263          
BLAST of BQ623525 vs. ExPASy Swiss-Prot
Match: GLNA2_RHILP (Glutamine synthetase 2 OS=Rhizobium leguminosarum bv. phaseoli GN=glnII PE=1 SV=3)

HSP 1 Score: 106.301 bits (264), Expect = 3.494e-34
Identity = 58/143 (40.56%), Postives = 77/143 (53.85%), Query Frame = 2
Query:   47 EEPWYGIEQEYTLLQKDVKWPLXXXXXXXXXXXXXXXXXXXADKA-WGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPI-QGDWNGAGAHANYSTKSMRNDGG 469
            E+ W+G EQEY   Q     PL                   ++     R+IV+ H   CL AGIN  GIN EV  GQWEFQ+       A DQ+W+ARY+L+R+TE  G+ + +  KP+   DWNG+G H N+STK +R  GG
Sbjct:  100 EDAWFGFEQEYFFYQNGR--PLGFPEQGYPAPQPYYTGVGYSNVGDVAREIVEEHLDLCLAAGINHEGINAEVAKGQWEFQIFGKGSKKAADQIWMARYLLQRLTEKYGIDIEYHCKPLGDTDWNGSGMHCNFSTKYLREVGG 240          

HSP 2 Score: 59.6918 bits (143), Expect = 3.494e-34
Identity = 32/60 (53.33%), Postives = 40/60 (66.67%), Query Frame = 3
Query:  456 GTMEAFEGIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFNGGVANRGASIRV 635
            G  E FE +  + +K      +HIA YG  N++RLTGKHETA  N F+ GVA+RGASIRV
Sbjct:  239 GGKEYFEALMASSDK---NLMDHIAVYGPDNDKRLTGKHETAPWNKFSYGVADRGASIRV 295          
BLAST of BQ623525 vs. ExPASy Swiss-Prot
Match: GLNA2_BRAJA (Glutamine synthetase 2 OS=Bradyrhizobium japonicum GN=glnII PE=3 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 5.922e-34
Identity = 57/141 (40.43%), Postives = 76/141 (53.90%), Query Frame = 2
Query:   56 WYGIEQEYTLLQ--KDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPI-QGDWNGAGAHANYSTKSMRNDGG 469
            W+G EQEY   +  + + +P                     D A  R IV+ H   CL AGIN  GIN EV  GQWEFQ+       A D++W+ARY++ R+TE  G+ + F  KP+   DWNG+G HAN+ST+ MR  GG
Sbjct:  105 WFGFEQEYFFYKDGRPLGFPTSGYPAPQGPYYTGVGFSNVGDVA--RKIVEEHLDLCLAAGINHEGINAEVAKGQWEFQIFGKGSKKAADEMWMARYLMLRLTEKYGIDIEFHCKPLGDTDWNGSGMHANFSTEYMRTVGG 243          

HSP 2 Score: 61.6178 bits (148), Expect = 5.922e-34
Identity = 33/60 (55.00%), Postives = 40/60 (66.67%), Query Frame = 3
Query:  456 GTMEAFEGIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFNGGVANRGASIRV 635
            G  E FE +  A +K      +HIA YG  N++RLTGKHETA  N F+ GVA+RGASIRV
Sbjct:  242 GGKEYFEALMAAFDK---NLMDHIAVYGPDNDKRLTGKHETAPWNKFSYGVADRGASIRV 298          
BLAST of BQ623525 vs. ExPASy Swiss-Prot
Match: GLNA2_RHIME (Glutamine synthetase 2 OS=Rhizobium meliloti GN=glnII PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.257e-30
Identity = 58/144 (40.28%), Postives = 75/144 (52.08%), Query Frame = 2
Query:   47 EEPWYGIEQEYTLLQ--KDVKWPLXXXXXXXXXXXXXXXXXXXADKAWGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPAVGISAGDQLWVARYILERITEIAGVVLSFDPKPI-QGDWNGAGAHANYSTKSMRNDGG 469
            E  W+G EQEY   +  + + +P                     D A  R IV+ H   CL AGIN  GIN EV  GQWEFQ+       A D++ VARY+L R+TE  G+ + F  KP+   DWNG+G HAN+ST  +R  GG
Sbjct:  102 EGAWFGFEQEYFFYKNGRPLGFPEQGYPAPQGPYYTGVGYKNVGDVA--RQIVEEHLDICLAAGINHEGINAEVAKGQWEFQIFGKGSKKAADEVCVARYLLVRLTEKYGIDVEFHCKPLGDTDWNGSGMHANFSTAYLREVGG 243          

HSP 2 Score: 55.4546 bits (132), Expect = 1.257e-30
Identity = 31/60 (51.67%), Postives = 37/60 (61.67%), Query Frame = 3
Query:  456 GTMEAFEGIKKAIEKLGLRHSEHIAAYGEGNERRLTGKHETADINTFNGGVANRGASIRV 635
            G  + FE +  A EK      +HI  YG  N  RLTGKHETA  + F+ GVA+RGASIRV
Sbjct:  242 GGQDYFEALMAAFEK---NLHDHINVYGPDNHLRLTGKHETAPWDKFSYGVADRGASIRV 298          
The following BLAST results are available for this feature:
BLAST of BQ623525 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 88
Match NameE-valueIdentityDescription
GLNA2_STRHY8.504e-4149.28Glutamine synthetase 2 OS=Streptomyces hygroscopic... [more]
GLNA_KLULA1.314e-4042.39Glutamine synthetase OS=Kluyveromyces lactis GN=GL... [more]
GLNA_TUBBO2.241e-4042.44Glutamine synthetase OS=Tuber borchii GN=GLN1 PE=2... [more]
GLNA2_FRAAL4.850e-4047.01Glutamine synthetase 2 OS=Frankia alni GN=glnII PE... [more]
GLNA_PANAR1.112e-3953.90Glutamine synthetase OS=Panulirus argus PE=2 SV=1[more]
GLNA2_RHILP3.494e-3440.56Glutamine synthetase 2 OS=Rhizobium leguminosarum ... [more]
GLNA2_BRAJA5.922e-3440.43Glutamine synthetase 2 OS=Bradyrhizobium japonicum... [more]
GLNA2_RHIME1.257e-3040.28Glutamine synthetase 2 OS=Rhizobium meliloti GN=gl... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00616 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00616 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623525 ID=BQ623525; Name=BQ623525; organism=Citrus sinensis; type=EST; length=695bp
AAGACATGCAGCTGCCAAGATTTTCAGCCATTCTGACGTTGTGGCTGAAG
AACCATGGTATGGTATTGAGCAGGAATACACCTTACTGCAGAAGGATGTT
AAATGGCCTCTTGGCTGGCCCATCGGTGGTTATCCTGGGCCTCAGGGACC
ATACTACTGTGGTGTTGGTGCTGACAAAGCTTGGGGGCGCGACATTGTAG
ACTCCCATTACAAGGCCTGTCTATATGCAGGAATCAACATCAGTGGCATC
AATGGAGAAGTCATGCCGGGGCAGTGGGAGTTCCAAGTTGGTCCCGCTGT
TGGAATTTCTGCTGGAGATCAGTTGTGGGTTGCCCGCTATATTTTAGAGA
GGATTACAGAGATTGCTGGAGTTGTGCTTTCTTTCGATCCCAAGCCAATT
CAGGGTGACTGGAATGGAGCTGGTGCTCACGCAAATTACAGCACCAAGTC
GATGAGGAACGATGGAGGCTTTTGAGGGTATTAAGAAAGCAATTGAGAAA
CTTGGACTGAGGCACAGTGAGCACATTGCCGCATATGGTGAAGGCAATGA
ACGCCGACTCACTGGCAAACATGAAACAGCTGACATCAACACTTTCAATG
GGGGTGTTGCTAACCGTGGGGCATCAATCCGTGTTGGACCAGACACAGAG
AAAGAAGGAAGGGGTACTTTGAGGACAGGAGACCTGCTTTTAACA
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