BQ623544

Overview
NameBQ623544
Unique NameBQ623544
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length513
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623544 vs. ExPASy Swiss-Prot
Match: RSE1_NEUCR (Pre-mRNA-splicing factor rse-1 OS=Neurospora crassa GN=rse-1 PE=3 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 3.985e-36
Identity = 71/164 (43.29%), Postives = 107/164 (65.24%), Query Frame = 1
Query:    4 DRIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHM 495
            +RI VGD+Q+   +  Y+ + N+L  FADD++ RW T    +D++++AG DKFGNIY VR P+ VS E +E  +   +   +  L+G PN++   V F+  D+ TS+ K SLV GG + +++  + G++G  + F SR+DVDFF +LE HMR E PPL GRDH+
Sbjct:  990 NRIIVGDLQQGITYVVYKAEGNRLIPFADDTLNRWTTCTTMVDYESVAGGDKFGNIYIVRCPERVSQETDEPGSEIHLMHARNYLHGTPNRLSLQVHFYTQDLPTSICKTSLVVGGQDVLLWSGLQGTVGVFIPFVSREDVDFFQNLENHMRAEDPPLAGRDHL 1153          
BLAST of BQ623544 vs. ExPASy Swiss-Prot
Match: RSE1_MAGGR (Pre-mRNA-splicing factor RSE1 OS=Magnaporthe grisea GN=RSE1 PE=3 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 6.363e-34
Identity = 65/163 (39.88%), Postives = 101/163 (61.96%), Query Frame = 1
Query:    7 RIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHM 495
            RI VGD+Q    +  Y+ + N+L  FADD++ RW T    +D+D+ AGADKFGN++ +R P+  S E +E  +   +   +  L+G  N++  +   +  D+ TS+ K +LV GG E +++G   G++G ++ F SR+D DFF  LE H+R E PPL GRDH+
Sbjct:  998 RIIVGDVQHGLIYVAYKSETNRLIPFADDTIARWTTCTTMVDYDSTAGADKFGNLWILRCPEKASQESDEPGSEVHLVHSRDYLHGTSNRLALMAHVYTQDIPTSICKTNLVVGGQEVLLWGGFQGTIGVLIPFVSREDADFFQSLEQHLRSEDPPLAGRDHL 1160          
BLAST of BQ623544 vs. ExPASy Swiss-Prot
Match: RSE1_SCHPO (Pre-mRNA-splicing factor rse1 OS=Schizosaccharomyces pombe GN=prp12 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 3.158e-33
Identity = 68/163 (41.72%), Postives = 102/163 (62.58%), Query Frame = 1
Query:    7 RIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHM 495
            RI V D Q S  F  Y+ ++N L  FADD++ RW T    +D+DT+AG DKFGNI+ +R P+ VS   +E+ +  K+  E+  LN  P+K++ +  F   D+ TSLQK  LV G  E +++  ++G++G    F +++DV FF  LE  +R+E PPL GRDH+
Sbjct:  989 RIVVADSQYSVRFVVYKPEDNHLLTFADDTIHRWTTTNVLVDYDTLAGGDKFGNIWLLRCPEHVSKLADEENSESKLIHEKPFLNSTPHKLDLMAHFFTNDIPTSLQKVQLVEGAREVLLWTGLLGTVGVFTPFINQEDVRFFQQLEFLLRKECPPLAGRDHL 1151          
BLAST of BQ623544 vs. ExPASy Swiss-Prot
Match: RSE1_CANAL (Pre-mRNA-splicing factor RSE1 OS=Candida albicans GN=RSE1 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 3.995e-28
Identity = 60/168 (35.71%), Postives = 104/168 (61.90%), Query Frame = 1
Query:    4 DRIYVGDIQES-FHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQEHPPLCGRDHMGLQ 504
            +RI + D  +S   F K+   +NQ   FADD + R +T+  ++D DT+ G DKFGNI+  R+ +D+S + ++D T   +K + G LN  P K++ +++FH+GD++TS     L   G ESVIY  + G++G ++   S+ +V+   +L+++M+Q    L G+DH+ L+
Sbjct: 1001 NRIIICDSHKSSIVFAKFDESQNQFVPFADDVMKRQITSIMNLDIDTLIGGDKFGNIFVTRIDEDISKQADDDWT--ILKTQDGILNSCPYKLQNLIEFHIGDIITSFNLGCLNLAGTESVIYTGLQGTIGLLIPLVSKSEVELLFNLQLYMQQSQNNLVGKDHLKLR 1166          
BLAST of BQ623544 vs. ExPASy Swiss-Prot
Match: RSE1_DEBHA (Pre-mRNA-splicing factor RSE1 OS=Debaryomyces hansenii GN=RSE1 PE=3 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 5.768e-27
Identity = 60/152 (39.47%), Postives = 97/152 (63.82%), Query Frame = 1
Query:    7 RIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIVQFHVGDVVTSLQKASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMRQ 462
            RI VGD   S  F KY   ENQ   FADD + R +TA   +D+DT+ G DKFGNI+  R+P+ +S + ++D     +++++  LNG+ ++++ I +F++ D+ TS  K SLV GG ES+IY  + G+LG +L  S+ ++V F   L++ +R+
Sbjct: 1027 RIVVGDSSMSTTFVKYDSTENQFIPFADDIMKRQITALVTLDYDTIIGGDKFGNIFVSRVPETISQQSDKD--WSLLRYQESYLNGSGSRLKNICEFYLQDIPTSFTKGSLVMGGKESIIYTGIQGTLGLLLPLSTENEVKFLGDLQLLLRK 1176          
BLAST of BQ623544 vs. ExPASy Swiss-Prot
Match: RSE1_ASHGO (Pre-mRNA-splicing factor RSE1 OS=Ashbya gossypii GN=RSE1 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.940e-12
Identity = 47/159 (29.56%), Postives = 76/159 (47.80%), Query Frame = 1
Query:    7 RIYVGDIQESFHFCKYRRDENQLYIFADDSVPRWLTAAHHIDFDTMAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKLNGAPNKMEEIV-------QFHVGDVVTSLQK-ASLVPGGGESVIYGTVMGSLGAMLAFSSRDDVDFFSHLEMHMR 459
            R+ VGDI ES     +   +NQ    ADD   R +T    +D  T+ G D+FGNI+ +RLP +    I+E    G   +      G P+ + E V        F++ D+   +   AS       S++Y  + G++G ++   +R +++FF  LE  MR
Sbjct: 1021 RVAVGDIHESVTLLHFDERKNQFIPVADDVTKRHVTVVKFVDECTVIGGDRFGNIWLLRLPLEYDRLIKE----GVDSYLLTLNTGIPSNIRECVFKWQLLNHFYINDIPMYIHLIASPQMADRASILYAGLQGTIGYLIPLITRREIEFFDLLEQAMR 1175          
The following BLAST results are available for this feature:
BLAST of BQ623544 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
RSE1_NEUCR3.985e-3643.29Pre-mRNA-splicing factor rse-1 OS=Neurospora crass... [more]
RSE1_MAGGR6.363e-3439.88Pre-mRNA-splicing factor RSE1 OS=Magnaporthe grise... [more]
RSE1_SCHPO3.158e-3341.72Pre-mRNA-splicing factor rse1 OS=Schizosaccharomyc... [more]
RSE1_CANAL3.995e-2835.71Pre-mRNA-splicing factor RSE1 OS=Candida albicans ... [more]
RSE1_DEBHA5.768e-2739.47Pre-mRNA-splicing factor RSE1 OS=Debaryomyces hans... [more]
RSE1_ASHGO8.940e-1229.56Pre-mRNA-splicing factor RSE1 OS=Ashbya gossypii G... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00635 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00635 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623544 ID=BQ623544; Name=BQ623544; organism=Citrus sinensis; type=EST; length=513bp
CGTGATCGAATCTATGTAGGTGACATCCAAGAGTCATTCCATTTCTGCAA
GTATAGACGGGATGAGAATCAACTCTATATTTTTGCTGACGATTCTGTTC
CAAGATGGCTCACTGCAGCACATCACATAGATTTTGACACCATGGCCGGT
GCCGACAAGTTTGGTAATATCTATTTTGTGCGACTACCACAGGATGTTTC
TGATGAGATAGAAGAAGATCCGACTGGTGGGAAGATAAAGTGGGAGCAGG
GGAAGCTTAACGGAGCTCCCAACAAGATGGAGGAGATAGTACAGTTTCAT
GTTGGTGATGTGGTCACATCCTTGCAGAAGGCATCCCTGGTTCCAGGTGG
CGGGGAGAGTGTCATTTATGGAACAGTGATGGGTAGCTTGGGAGCTATGC
TTGCATTTTCATCCCGTGATGATGTTGACTTCTTTTCTCACCTTGAGATG
CATATGAGGCAGGAACATCCACCTTTATGTGGTCGTGATCACATGGGCTT
ACAGATCAACTTA
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