BQ623545 | Citrus Genome Database

Overview


Name	BQ623545
Unique Name	BQ623545
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	665

Libraries


Library Name	Type
Ridge pineapple sweet orange entire seedling	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of BQ623545 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 5.189e-71
Identity = 63/77 (81.82%), Postives = 69/77 (89.61%), Query Frame = 2

Query:  353 PGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVAHNAWAYATNFVPGS 580
            PGG  FDPLGLADDP  FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ +PVA+NAW YAT FVPG+
Sbjct:  189 PGGQYFDPLGLADDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPGA 265

HSP 2 Score: 128.642 bits (322), Expect = 5.189e-71
Identity = 63/90 (70.00%), Postives = 71/90 (78.89%), Query Frame = 1

Query:   46 PRHLLRTCELEVIHSRWAMLGALGCVFPEILSK-NGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI 312
            P    +   LEVIH RWAMLGALGC+FPE+L K   V F E VWFKAG+QIFS+GGLDYLGNPNL+HAQSILA+   QVVLMG VEG+RI
Sbjct:   86 PEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWVKVDFKEPVWFKAGSQIFSDGGLDYLGNPNLVHAQSILAVLGFQVVLMGLVEGFRI 175

HSP 3 Score: 48.9062 bits (115), Expect = 5.189e-71
Identity = 20/21 (95.24%), Postives = 20/21 (95.24%), Query Frame = 3

Query:    3 PGDYGWDTAGLSADPETFAKN 65
            PGDYGWDTAGLSADPE FAKN
Sbjct:   72 PGDYGWDTAGLSADPEAFAKN 92

[Close]

BLAST of BQ623545 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 4.123e-67
Identity = 62/82 (75.61%), Postives = 71/82 (86.59%), Query Frame = 1

Query:   70 ELEVIHSRWAMLGALGCVFPEILSKN-GVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI 312
            ELEVIH+RWA+LGALG + PE+LS   GVKFGE VWFKAGAQIFSEGGLDYLG+P LIHAQ+I+A  A QVVLMG +EGYR+
Sbjct:   86 ELEVIHARWALLGALGILTPELLSTYAGVKFGEPVWFKAGAQIFSEGGLDYLGSPALIHAQNIVATLAVQVVLMGLIEGYRV 167

HSP 2 Score: 124.79 bits (312), Expect = 4.123e-67
Identity = 59/76 (77.63%), Postives = 66/76 (86.84%), Query Frame = 2

Query:  353 PGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVAHNAWAYATNFVPGS 580
            PG +FDPLGLADDPD FAELKVKE+KNGRLAMFS FGFFVQAIVTGKGPI+NL DH+ADP  +NA+A AT F P +
Sbjct:  181 PGESFDPLGLADDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADPGTNNAFAAATKFTPSA 256

HSP 3 Score: 46.595 bits (109), Expect = 4.123e-67
Identity = 19/20 (95.00%), Postives = 19/20 (95.00%), Query Frame = 3

Query:    3 PGDYGWDTAGLSADPETFAK 62
            PGDYGWDTAGLSADPETF K
Sbjct:   64 PGDYGWDTAGLSADPETFKK 83

[Close]

BLAST of BQ623545 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.817e-65
Identity = 60/81 (74.07%), Postives = 66/81 (81.48%), Query Frame = 2

Query:  335 DLTHFTPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVAHNAWAYATNFVPG 577
            DL    PGG FDPLGLADDPD FAELKVKE+KNGRLAMFS  GFFVQAIVTGKGP++NL DH+ADP  + A+A AT F PG
Sbjct:  172 DLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNKAFASATKFTPG 252

HSP 2 Score: 117.472 bits (293), Expect = 2.817e-65
Identity = 58/89 (65.17%), Postives = 72/89 (80.90%), Query Frame = 1

Query:   46 PRHLLRTCELEVIHSRWAMLGALGCVFPEILSKN-GVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 309
            P+   R  E+E+IH+RWA+LGALG + PE+LS+  GV+FGE VWFKAGAQIF++GGL+YLGN +LIHAQSI+A  A QVVLMG  E YR
Sbjct:   73 PQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYR 161

HSP 3 Score: 46.2098 bits (108), Expect = 2.817e-65
Identity = 18/20 (90.00%), Postives = 20/20 (100.00%), Query Frame = 3

Query:    3 PGDYGWDTAGLSADPETFAK 62
            PGDYGWDTAGLSADP+TFA+
Sbjct:   59 PGDYGWDTAGLSADPQTFAR 78

[Close]

BLAST of BQ623545 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.449e-64
Identity = 68/75 (90.67%), Postives = 72/75 (96.00%), Query Frame = 2

Query:  353 PGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVAHNAWAYATNFVPG 577
            PG AFDPLGLADDP+  AELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENLYDH+ADPVA+NAWAYATNFVPG
Sbjct:   75 PGDAFDPLGLADDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPG 149

HSP 2 Score: 121.709 bits (304), Expect = 1.449e-64
Identity = 56/61 (91.80%), Postives = 59/61 (96.72%), Query Frame = 1

Query:  130 EILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI 312
            E+L KNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMG +EGYR+
Sbjct:    1 ELLVKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGLIEGYRV 61

[Close]

BLAST of BQ623545 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 6.680e-64
Identity = 66/89 (74.16%), Postives = 73/89 (82.02%), Query Frame = 1

Query:   46 PRHLLRTCELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI 312
            P    +  ELEVIHSR AM  ALGC+FPE+LS  G  FGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQSILAIW  +V+LMG VEGYRI
Sbjct:   92 PETFAKNRELEVIHSRCAMSAALGCIFPELLSVMGQGFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWTTKVILMGAVEGYRI 180

HSP 2 Score: 102.064 bits (253), Expect = 6.680e-64
Identity = 51/74 (68.92%), Postives = 60/74 (81.08%), Query Frame = 2

Query:  359 GAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVAHNAWAYATNFVPGS 580
            G+FD LGLA+D + FAELKVKELKNGRLAMFSMFGFFVQAIV+ K  +ENL DH+   V +NA +  TNFVPG+
Sbjct:  195 GSFDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHLGWTVNNNALSNVTNFVPGN 268

HSP 3 Score: 47.3654 bits (111), Expect = 6.680e-64
Identity = 20/21 (95.24%), Postives = 20/21 (95.24%), Query Frame = 3

Query:    3 PGDYGWDTAGLSADPETFAKN 65
            PGDYGWDTAGLSA PETFAKN
Sbjct:   78 PGDYGWDTAGLSAYPETFAKN 98

[Close]

BLAST of BQ623545 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.252e-63
Identity = 59/74 (79.73%), Postives = 65/74 (87.84%), Query Frame = 2

Query:  353 PGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVAHNAWAYATNFVP 574
            PG AFDPLGLADDPD FAELKVKE+KNGRLAMF+  GFFVQAIVTGKGPIENL DH+A+P  +NA+AYAT F P
Sbjct:  199 PGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANPAENNAFAYATKFTP 272

HSP 2 Score: 112.849 bits (281), Expect = 3.252e-63
Identity = 57/91 (62.64%), Postives = 73/91 (80.22%), Query Frame = 1

Query:   46 PRHLLRTCELEVIHSRWAMLGALGCVFPEILS-KNGVKFGEA-VWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI 312
            P    R  ELE+IH+R  +LGALG V PE+L+ ++G+KFG+A +WFKAGA IF +GGL+YLGNP+LIHAQ+I+A  A QVVLMG VEGYR+
Sbjct:   95 PETFKRYRELELIHARCGLLGALGMVTPELLADEDGIKFGDAAIWFKAGAAIFQDGGLNYLGNPSLIHAQNIVATLAVQVVLMGLVEGYRV 185

HSP 3 Score: 45.4394 bits (106), Expect = 3.252e-63
Identity = 18/20 (90.00%), Postives = 19/20 (95.00%), Query Frame = 3

Query:    3 PGDYGWDTAGLSADPETFAK 62
            PGDYGWDTAGLSADPETF +
Sbjct:   81 PGDYGWDTAGLSADPETFKR 100

[Close]

BLAST of BQ623545 vs. ExPASy Swiss-Prot
Match: CB21_SILPR (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Silene pratensis PE=2 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 1.119e-52
Identity = 74/89 (83.15%), Postives = 80/89 (89.89%), Query Frame = 1

Query:   46 PRHLLRTCELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI 312
            P    +  ELEVIH RWAMLGALGCVFPE+L+KNGVKFGEAVWFKAG+QIF EGGLDYLGNPNL+HAQSILAIWACQVVLMG VEGYR+
Sbjct:   87 PETFAKNRELEVIHCRWAMLGALGCVFPELLAKNGVKFGEAVWFKAGSQIFQEGGLDYLGNPNLVHAQSILAIWACQVVLMGAVEGYRV 175

HSP 2 Score: 50.8322 bits (120), Expect = 1.119e-52
Identity = 21/21 (100.00%), Postives = 21/21 (100.00%), Query Frame = 3

Query:    3 PGDYGWDTAGLSADPETFAKN 65
            PGDYGWDTAGLSADPETFAKN
Sbjct:   73 PGDYGWDTAGLSADPETFAKN 93

HSP 3 Score: 36.965 bits (84), Expect = 1.119e-52
Identity = 16/26 (61.54%), Postives = 19/26 (73.08%), Query Frame = 2

Query:  326 LVKDLTHFTPGGAFDPLGLADDPDQF 403
            L + L    PGGAFDPLGLA+DP+ F
Sbjct:  180 LGEGLDQLYPGGAFDPLGLAEDPEAF 205

[Close]

BLAST of BQ623545 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.534e-48
Identity = 74/89 (83.15%), Postives = 81/89 (91.01%), Query Frame = 1

Query:   46 PRHLLRTCELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI 312
            P    +  ELEVIHSRWAMLGALGC+FPE+LSKNGV+FGEAVWFKAGAQIFSEGGLDYLGNPNL+HAQSILAIWA QVVLMG +EGYR+
Sbjct:   87 PETFAKNRELEVIHSRWAMLGALGCIFPELLSKNGVQFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRV 175

HSP 2 Score: 50.8322 bits (120), Expect = 5.534e-48
Identity = 21/21 (100.00%), Postives = 21/21 (100.00%), Query Frame = 3

Query:    3 PGDYGWDTAGLSADPETFAKN 65
            PGDYGWDTAGLSADPETFAKN
Sbjct:   73 PGDYGWDTAGLSADPETFAKN 93

HSP 3 Score: 149.058 bits (375), Expect = 1.987e-35
Identity = 81/150 (54.00%), Postives = 98/150 (65.33%), Query Frame = 2

Query:  140 PRME*SSAKQFGSRLALKYSLKV----ALTILATPTSFMLRAFWLSGPARLCLWVLLKDTELVAVLLVKDLTHFTPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVAHNAWAYATNFVPG 577
            P +   +  QFG  +  K   ++     L  L  P     ++       ++ L  L++   +    L + L    PGGAFDPLGLADDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPIENL DHIADPVA+NAWA+ATNFVPG
Sbjct:  114 PELLSKNGVQFGEAVWFKAGAQIFSEGGLDYLGNPNLVHAQSILAIWATQVVLMGLIEGYRVGGGPLGEGLDPLYPGGAFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADPVANNAWAFATNFVPG 263

[Close]

BLAST of BQ623545 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.328e-43
Identity = 61/75 (81.33%), Postives = 68/75 (90.67%), Query Frame = 2

Query:  353 PGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVAHNAWAYATNFVPG 577
            PGG+FDPL    DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV +NAWA+ATNFVPG
Sbjct:   49 PGGSFDPLASLTDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPG 123

HSP 2 Score: 63.929 bits (154), Expect = 1.328e-43
Identity = 28/34 (82.35%), Postives = 32/34 (94.12%), Query Frame = 1

Query:  211 LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI 312
            LDYLGNP+L+HAQSILAIWA QV+LMG VEGYR+
Sbjct:    1 LDYLGNPSLVHAQSILAIWATQVILMGAVEGYRV 34

[Close]

BLAST of BQ623545 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 6.367e-43
Identity = 65/75 (86.67%), Postives = 72/75 (96.00%), Query Frame = 2

Query:  353 PGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVAHNAWAYATNFVPG 577
            PGG+FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DHIADPV +NAWA+ATNFVPG
Sbjct:  192 PGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPG 266

HSP 2 Score: 53.1434 bits (126), Expect = 6.367e-43
Identity = 24/27 (88.89%), Postives = 26/27 (96.30%), Query Frame = 1

Query:  232 NLIHAQSILAIWACQVVLMGFVEGYRI 312
            +L+HAQSILAIWACQVVLMG VEGYRI
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRI 178

The following BLAST results are available for this feature:

BLAST of BQ623545 vs. ExPASy Swiss-Prot

BLAST of BQ623545 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78


Match Name	E-value	Identity	Description
CB23_SOLLC	5.189e-71	81.82	Chlorophyll a-b binding protein 13, chloroplastic ...	[more]
CB2_CHLMO	4.123e-67	75.61	Chlorophyll a-b binding protein of LHCII type I, c...	[more]
CB2_DUNTE	2.817e-65	74.07	Chlorophyll a-b binding protein of LHCII type I, c...	[more]
CB22_PINSY	1.449e-64	90.67	Chlorophyll a-b binding protein type 2 member 2 (F...	[more]
CB2_MALDO	6.680e-64	74.16	Chlorophyll a-b binding protein AB10, chloroplasti...	[more]
CB2_DUNSA	3.252e-63	79.73	Chlorophyll a-b binding protein of LHCII type I, c...	[more]
CB21_SILPR	1.119e-52	83.15	Chlorophyll a-b binding protein, chloroplastic (Fr...	[more]
CB21_LEMGI	5.534e-48	83.15	Chlorophyll a-b binding protein of LHCII type I, c...	[more]
CB21_RAPSA	1.328e-43	81.33	Chlorophyll a-b binding of LHCII type 1 protein (F...	[more]
CB2F_SOLLC	6.367e-43	86.67	Chlorophyll a-b binding protein 3B, chloroplastic ...	[more]

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Properties


Property Name	Value
Genbank description	USDA-FP_00636 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00636 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>BQ623545 ID=BQ623545; Name=BQ623545; organism=Citrus sinensis; type=EST; length=665bp
TCCCTGGTGACTATGGCTGGGATACCGCTGGTTTATCAGCAGACCCCGAG
ACATTTGCTAAGAACCTGTGAGCTAGAGGTGATCCACAGCAGATGGGCAA
TGCTTGGAGCTCTTGGCTGCGTCTTCCCTGAAATCCTCTCCAAGAATGGA
GTGAAGTTCGGCGAAGCAGTTTGGTTCAAGGCTGGCGCTCAAATATTCTC
TGAAGGTGGCCTTGACTATCTTGGCAACCCCAACCTCATTCATGCTCAGA
GCATTTTGGCTATCTGGGCCTGCCAGGTTGTGCTTATGGGTTTTGTTGAA
GGATACAGAATTGGTGGCGGTCCTCTTGGTGAAGGACTTGACCCACTTTA
CCCCTGGTGGTGCTTTTGACCCACTTGGTTTGGCTGATGACCCCGATCAA
TTTGCTGAGTTGAAGGTCAAGGAGCTCAAGAATGGCCGTCTGGCTATGTT
CTCCATGTTTGGATTCTTTGTTCAGGCTATTGTCACTGGGAAGGGTCCAA
TTGAGAACCTCTACGACCACATTGCTGATCCTGTGGCCCACAATGCCTGG
GCTTATGCCACTAACTTTGTTCCCGGAAGTAAAGAACTCATGACTTGATG
GGGTCTTTTCAGCTGGAACATATTCTATGTATCGTATGTGCTTTTGTGGA
AACTCTGCATGGACT