BQ623545

Overview
NameBQ623545
Unique NameBQ623545
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length665
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1260 contig Csv1_Contig1260:690..1355. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623545 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 6.367e-43
Identity = 65/75 (86.67%), Postives = 72/75 (96.00%), Query Frame = 2 
Query:  353 PGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVAHNAWAYATNFVPG 577
            PGG+FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DHIADPV +NAWA+ATNFVPG
Sbjct:  192 PGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPG 266

HSP 2 Score: 53.1434 bits (126), Expect = 6.367e-43
Identity = 24/27 (88.89%), Postives = 26/27 (96.30%), Query Frame = 1 
Query:  232 NLIHAQSILAIWACQVVLMGFVEGYRI 312
            +L+HAQSILAIWACQVVLMG VEGYRI
Sbjct:  152 SLVHAQSILAIWACQVVLMGAVEGYRI 178
[Close]
BLAST of BQ623545 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 8.526e-43
Identity = 64/75 (85.33%), Postives = 72/75 (96.00%), Query Frame = 2 
Query:  353 PGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVAHNAWAYATNFVPG 577
            PGG+FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV +NAW+YATNFVPG
Sbjct:   41 PGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPG 115

HSP 2 Score: 53.1434 bits (126), Expect = 8.526e-43
Identity = 24/27 (88.89%), Postives = 26/27 (96.30%), Query Frame = 1 
Query:  232 NLIHAQSILAIWACQVVLMGFVEGYRI 312
            +L+HAQSILAIWACQVVLMG VEGYRI
Sbjct:    1 SLVHAQSILAIWACQVVLMGAVEGYRI 27
[Close]
BLAST of BQ623545 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.081e-42
Identity = 64/75 (85.33%), Postives = 72/75 (96.00%), Query Frame = 2 
Query:  353 PGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVAHNAWAYATNFVPG 577
            PGG+FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV +NAWA+ATNFVPG
Sbjct:  190 PGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPG 264

HSP 2 Score: 53.1434 bits (126), Expect = 1.081e-42
Identity = 24/27 (88.89%), Postives = 26/27 (96.30%), Query Frame = 1 
Query:  232 NLIHAQSILAIWACQVVLMGFVEGYRI 312
            +L+HAQSILAIWACQVVLMG VEGYRI
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRI 176
[Close]
BLAST of BQ623545 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 1.081e-42
Identity = 64/75 (85.33%), Postives = 72/75 (96.00%), Query Frame = 2 
Query:  353 PGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVAHNAWAYATNFVPG 577
            PGG+FDPLGLA+DP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV +NAWA+ATNFVPG
Sbjct:  190 PGGSFDPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPG 264

HSP 2 Score: 53.1434 bits (126), Expect = 1.081e-42
Identity = 24/27 (88.89%), Postives = 26/27 (96.30%), Query Frame = 1 
Query:  232 NLIHAQSILAIWACQVVLMGFVEGYRI 312
            +L+HAQSILAIWACQVVLMG VEGYRI
Sbjct:  150 SLVHAQSILAIWACQVVLMGAVEGYRI 176
[Close]
BLAST of BQ623545 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 1.054e-39
Identity = 64/89 (71.91%), Postives = 76/89 (85.39%), Query Frame = 1 
Query:   46 PRHLLRTCELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI 312
            P    R  ELE+IH+RWAMLGALGC  PE+L+K+G KFGEAVWFKAGAQIFSEGGLDYLGNP+L+HAQ+I+A  A QV+LMG +EGYR+
Sbjct:   76 PETFKRYRELELIHARWAMLGALGCQTPELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRV 164

HSP 2 Score: 45.4394 bits (106), Expect = 1.054e-39
Identity = 18/20 (90.00%), Postives = 19/20 (95.00%), Query Frame = 3 
Query:    3 PGDYGWDTAGLSADPETFAK 62
            PGDYGWDTAGLSADPETF +
Sbjct:   62 PGDYGWDTAGLSADPETFKR 81

HSP 3 Score: 125.561 bits (314), Expect = 2.352e-28
Identity = 68/151 (45.03%), Postives = 92/151 (60.93%), Query Frame = 2 
Query:  140 PRME*SSAKQFGSRLALKYSLKV----ALTILATPTSFMLRAFWLSGPARLCLWVLLKDTELVAVLLVKDLTHFTPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVAHNAWAYATNFVPGS 580
            P +   S  +FG  +  K   ++     L  L  P+    +    +   ++ L  L++   +      + L    PG +FDPLGLADDPD FAELKVKE+KNGRLA FSMFGFFVQAIVTGKGP++NL DH+A+P  +NA+A+AT F P +
Sbjct:  103 PELLAKSGTKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQNIVATSAVQVILMGLIEGYRVNGGPAGEGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNNAFAFATKFTPSA 253
[Close]
BLAST of BQ623545 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 3.173e-35
Identity = 45/64 (70.31%), Postives = 54/64 (84.38%), Query Frame = 2 
Query:  353 PGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVAHN 544
            PGG FDPLGLA DP+Q A LKVKE+KNGRLAMF+M GFF+QA VTG+GP+ENL  H++DP  +N
Sbjct:  202 PGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNN 265

HSP 2 Score: 69.3218 bits (168), Expect = 3.173e-35
Identity = 42/97 (43.30%), Postives = 55/97 (56.70%), Query Frame = 1 
Query:   25 PLVYQQTPRHLLRTCELEVIHSRWAMLGALGCVFPEILSKNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYRI 312
            P    + P +  +    E+IH+RWAMLGA G + PE L+K G   G EAVWFK GA +     L+Y G    I    +LA+ A +VVL+G  E YRI
Sbjct:   97 PFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVLAVVA-EVVLLGGAEYYRI 190
[Close]
BLAST of BQ623545 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 6.645e-29
Identity = 53/82 (64.63%), Postives = 59/82 (71.95%), Query Frame = 2 
Query:  332 KDLTHFTPGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVAHNA-WAYATNFVP 574
            +DL    PGG FDPLGLADDPD F ELKVKE+KNGRLAM  M GF+ QAIVTG+GP+EN   H+ DP AHN   A  T F P
Sbjct:   40 EDLDRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLTALVTQFAP 121

HSP 2 Score: 39.2762 bits (90), Expect = 6.645e-29
Identity = 19/25 (76.00%), Postives = 22/25 (88.00%), Query Frame = 1 
Query:  235 LIHAQSILAIWACQVVLMGFVEGYR 309
            LIHA+S+LAI A QV+LMG VEGYR
Sbjct:    5 LIHAKSLLAILATQVLLMGAVEGYR 29
[Close]
BLAST of BQ623545 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.615e-23
Identity = 38/65 (58.46%), Postives = 49/65 (75.38%), Query Frame = 2 
Query:  353 PGGA-FDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVAHN 544
            PGG  F+PLG   D     ELK+KE+KNGRLAM ++ G+F+QA+VTG GP +NL DH+ADPV +N
Sbjct:  201 PGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNN 265

HSP 2 Score: 40.0466 bits (92), Expect = 5.615e-23
Identity = 29/80 (36.25%), Postives = 40/80 (50.00%), Query Frame = 1 
Query:   76 EVIHSRWAMLGALGCVFPEILSKNGVKFGEA--VWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 309
            EVI+ R+AMLGA G + PEIL K G+   E    WF+ G  I   G  +Y  +           ++  ++ LMGF E  R
Sbjct:  100 EVINGRFAMLGAAGAIAPEILGKAGLIPQETALAWFQTGV-IPPAGTYNYWADN--------YTLFVLEMALMGFAEHRR 170

HSP 3 Score: 25.0238 bits (53), Expect = 5.615e-23
Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 3 
Query:    3 PGDYGWDTAGLSADPE 50
            PGD+G+D  GLS DPE
Sbjct:   71 PGDFGFDPLGLS-DPE 85
[Close]
BLAST of BQ623545 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.588e-22
Identity = 37/65 (56.92%), Postives = 48/65 (73.85%), Query Frame = 2 
Query:  353 PGGAF-DPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPVAHN 544
            PGG F +PLG   D     ELK+KE+KNGRLAM ++ G+F+Q +VTG GP +NL DH+ADPV +N
Sbjct:  203 PGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNN 267

HSP 2 Score: 38.5058 bits (88), Expect = 1.588e-22
Identity = 28/80 (35.00%), Postives = 40/80 (50.00%), Query Frame = 1 
Query:   76 EVIHSRWAMLGALGCVFPEILSKNGVKFGEA--VWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 309
            EVI+ R+AMLGA+G + PE L K G+   E    WF+ G  I   G  +Y  +           ++  ++ LMGF E  R
Sbjct:  102 EVINGRFAMLGAVGAIAPEYLGKVGLIPQETALAWFQTGV-IPPAGTYNYWADN--------YTLFVLEMALMGFAEHRR 172

HSP 3 Score: 26.5646 bits (57), Expect = 1.588e-22
Identity = 12/16 (75.00%), Postives = 13/16 (81.25%), Query Frame = 3 
Query:    3 PGDYGWDTAGLSADPE 50
            PGDYG+D  GLS DPE
Sbjct:   73 PGDYGFDPLGLS-DPE 87
[Close]
BLAST of BQ623545 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.684e-22
Identity = 39/65 (60.00%), Postives = 49/65 (75.38%), Query Frame = 2 
Query:  353 PGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENLYDHIADPVAHN 544
            PGGAFDPLG + DP +F ELKVKE+KNGRLA+ ++ GF V Q+   G GP+ENL  H+ADP  +N
Sbjct:  169 PGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNN 233

HSP 2 Score: 41.9726 bits (97), Expect = 2.684e-22
Identity = 32/91 (35.16%), Postives = 42/91 (46.15%), Query Frame = 1 
Query:   40 QTPRHLLRTCELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGG-LDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 309
            + P +L R  E E+IH RWAML   G + PE L       G   W KA       GG   YLG P  +   ++  I A + + + FVE  R
Sbjct:   76 EVPANLERYKESELIHCRWAMLAVPGIIVPEAL-------GLGNWVKAQEWAAIPGGQATYLGQP--VPWGTLPTILAIEFLAIAFVEHQR 157

HSP 3 Score: 23.0978 bits (48), Expect = 2.684e-22
Identity = 8/15 (53.33%), Postives = 11/15 (73.33%), Query Frame = 3 
Query:    3 PGDYGWDTAGLSADP 47
            PGD+G+D+ GL   P
Sbjct:   64 PGDFGFDSLGLGEVP 78
The following BLAST results are available for this feature:
BLAST of BQ623545 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
CB2E_SOLLC6.367e-4386.67Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2D_SOLLC8.526e-4385.33Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB2C_SOLLC1.081e-4285.33Chlorophyll a-b binding protein 1C, chloroplastic ... [more]
CB2A_SOLLC1.081e-4285.33Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB2_CHLRE1.054e-3971.91Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB26_ARATH3.173e-3570.31Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB21_EUGGR6.645e-2964.63Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB13_SOLLC5.615e-2358.46Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA1.588e-2256.92Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB11_SOLLC2.684e-2260.00Chlorophyll a-b binding protein 6A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00636 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00636 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623545 ID=BQ623545; Name=BQ623545; organism=Citrus sinensis; type=EST; length=665bp
TCCCTGGTGACTATGGCTGGGATACCGCTGGTTTATCAGCAGACCCCGAG
ACATTTGCTAAGAACCTGTGAGCTAGAGGTGATCCACAGCAGATGGGCAA
TGCTTGGAGCTCTTGGCTGCGTCTTCCCTGAAATCCTCTCCAAGAATGGA
GTGAAGTTCGGCGAAGCAGTTTGGTTCAAGGCTGGCGCTCAAATATTCTC
TGAAGGTGGCCTTGACTATCTTGGCAACCCCAACCTCATTCATGCTCAGA
GCATTTTGGCTATCTGGGCCTGCCAGGTTGTGCTTATGGGTTTTGTTGAA
GGATACAGAATTGGTGGCGGTCCTCTTGGTGAAGGACTTGACCCACTTTA
CCCCTGGTGGTGCTTTTGACCCACTTGGTTTGGCTGATGACCCCGATCAA
TTTGCTGAGTTGAAGGTCAAGGAGCTCAAGAATGGCCGTCTGGCTATGTT
CTCCATGTTTGGATTCTTTGTTCAGGCTATTGTCACTGGGAAGGGTCCAA
TTGAGAACCTCTACGACCACATTGCTGATCCTGTGGCCCACAATGCCTGG
GCTTATGCCACTAACTTTGTTCCCGGAAGTAAAGAACTCATGACTTGATG
GGGTCTTTTCAGCTGGAACATATTCTATGTATCGTATGTGCTTTTGTGGA
AACTCTGCATGGACT
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