BQ623545
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of BQ623545 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.461e-20 Identity = 39/65 (60.00%), Postives = 48/65 (73.85%), Query Frame = 2 Query: 353 PGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENLYDHIADPVAHN 544 PGGAFDPLG + DP +F ELK+KE+KNGRLAM + GF V Q+ G GP+ENL H+ADP +N Sbjct: 168 PGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 232 HSP 2 Score: 39.2762 bits (90), Expect = 1.461e-20 Identity = 31/96 (32.29%), Postives = 41/96 (42.71%), Query Frame = 1 Query: 25 PLVYQQTPRHLLRTCELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 309 PL P + R E E+ H RWAML G + PE L G W KA +G YLGNP + ++ I A + + + F E R Sbjct: 70 PLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQR 156
BLAST of BQ623545 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 7.058e-20 Identity = 34/62 (54.84%), Postives = 43/62 (69.35%), Query Frame = 2 Query: 353 PGGA-FDPLGLAD-DPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADP 532 PGG FDPLG P + EL+ KE+KNGRLAM ++ G + Q I TG GPI+NL+ H+ADP Sbjct: 197 PGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258 HSP 2 Score: 50.0618 bits (118), Expect = 7.058e-20 Identity = 32/95 (33.68%), Postives = 45/95 (47.37%), Query Frame = 1 Query: 25 PLVYQQTPRHLLRTCELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 309 PL P L + E++HSRWAMLGA G PE L+K GV W+ AG Q +Y + ++ ++VL+G+ EG R Sbjct: 90 PLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQ-------EYFTDTT--------TLFVIELVLIGWAEGRR 168
BLAST of BQ623545 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1) HSP 1 Score: 67.3958 bits (163), Expect = 4.442e-19 Identity = 34/62 (54.84%), Postives = 43/62 (69.35%), Query Frame = 2 Query: 353 PGGA-FDPLGLAD-DPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADP 532 PGG FDPLG P + EL+ KE+KNGRLAM ++ G + Q I TG GPI+NL+ H+ADP Sbjct: 197 PGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258 HSP 2 Score: 47.3654 bits (111), Expect = 4.442e-19 Identity = 30/95 (31.58%), Postives = 45/95 (47.37%), Query Frame = 1 Query: 25 PLVYQQTPRHLLRTCELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 309 PL P L + E++H RWAMLGA G PE+L+K G+ W+ AG Q +Y + ++ ++VL+G+ EG R Sbjct: 90 PLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQ-------EYFTDTT--------TLFIVELVLIGWAEGRR 168
BLAST of BQ623545 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 1.036e-17 Identity = 34/62 (54.84%), Postives = 46/62 (74.19%), Query Frame = 2 Query: 353 PGGAF-DPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPV 535 PGG F DPLGLA DP++ A+L++ E+K+ RLAM + GF VQA TGKGP+ N H++DP+ Sbjct: 218 PGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPL 279 HSP 2 Score: 37.7354 bits (86), Expect = 1.036e-17 Identity = 29/80 (36.25%), Postives = 42/80 (52.50%), Query Frame = 1 Query: 70 ELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 309 E E+IH RWAML LG + E L+ GV W AG ++ G YLG P ++ IW +V+++G++E R Sbjct: 138 ECELIHGRWAMLATLGALSVEWLT--GV-----TWQDAG-KVELVDGSSYLGQPLPFSISTL--IW-IEVLVIGYIEFQR 206
BLAST of BQ623545 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.348e-17 Identity = 34/62 (54.84%), Postives = 44/62 (70.97%), Query Frame = 2 Query: 353 PGGAF-DPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPV 535 PGG F DPLGLA DP + A+L++ E+K+ RLAM GF VQA TGKGP+ N H++DP+ Sbjct: 215 PGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPL 276 HSP 2 Score: 39.2762 bits (90), Expect = 1.348e-17 Identity = 31/85 (36.47%), Postives = 44/85 (51.76%), Query Frame = 1 Query: 55 LLRTCELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 309 L R E E+IH RWAML LG + E L+ GV W AG ++ G YLG P ++ IW +V+++G++E R Sbjct: 130 LQRFRECELIHGRWAMLATLGAITVEWLT--GV-----TWQDAG-KVELVDGSSYLGQPLPFSISTL--IW-IEVLVIGYIEFQR 203
BLAST of BQ623545 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1) HSP 1 Score: 60.8474 bits (146), Expect = 1.516e-15 Identity = 29/53 (54.72%), Postives = 37/53 (69.81%), Query Frame = 2 Query: 353 PGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL 511 PGG FDPLGLA DP++ LK+ E+K+ RLAM + F +QA TGKGP+ L Sbjct: 219 PGGYFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPVSFL 271 HSP 2 Score: 41.9726 bits (97), Expect = 1.516e-15 Identity = 30/80 (37.50%), Postives = 42/80 (52.50%), Query Frame = 1 Query: 70 ELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 309 E E+IH RWAMLG LG + E L+ G+ W AG EG YLG P ++ IW +V+++G++E R Sbjct: 139 ECELIHGRWAMLGTLGAIAVEALT--GI-----AWQDAGKVELVEGS-SYLGQPLPFSLTTL--IW-IEVLVVGYIEFQR 207
BLAST of BQ623545 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3) HSP 1 Score: 55.0694 bits (131), Expect = 5.052e-12 Identity = 28/54 (51.85%), Postives = 38/54 (70.37%), Query Frame = 2 Query: 353 PGGAFDPLGLADDPDQFA-ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL 511 PGG FDPL LA + ++ A LK E+K+ RLAM S FG+ VQA+ TG+G + +L Sbjct: 214 PGGVFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGVQALSTGEGALGSL 267 HSP 2 Score: 35.8094 bits (81), Expect = 5.052e-12 Identity = 31/85 (36.47%), Postives = 39/85 (45.88%), Query Frame = 1 Query: 55 LLRTCELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 309 L R E E+IH RWAML LG + E + GV W +AG G Y G L SI + +V+L+G E YR Sbjct: 130 LARFRECELIHGRWAMLACLGALVAE--ATTGVS-----WVEAGK--VELDGASYAG---LSLPFSITQLIWIEVILVGGAEFYR 202
BLAST of BQ623545 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 9.928e-11 Identity = 36/60 (60.00%), Postives = 40/60 (66.67%), Query Frame = 2 Query: 353 PGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADP 532 PGG F+PL A P Q E K KEL NGRLAM + GF VQ VTGKGP ENL H++DP Sbjct: 186 PGGIFNPLNFA--PTQ--EAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDP 241 The following BLAST results are available for this feature:
BLAST of BQ623545 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 78
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Sequences
The
following sequences are available for this feature:
EST sequence >BQ623545 ID=BQ623545; Name=BQ623545; organism=Citrus sinensis; type=EST; length=665bpback to top |