BQ623545

Overview
NameBQ623545
Unique NameBQ623545
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length665
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623545 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.461e-20
Identity = 39/65 (60.00%), Postives = 48/65 (73.85%), Query Frame = 2
Query:  353 PGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFV-QAIVTGKGPIENLYDHIADPVAHN 544
            PGGAFDPLG + DP +F ELK+KE+KNGRLAM +  GF V Q+   G GP+ENL  H+ADP  +N
Sbjct:  168 PGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 232          

HSP 2 Score: 39.2762 bits (90), Expect = 1.461e-20
Identity = 31/96 (32.29%), Postives = 41/96 (42.71%), Query Frame = 1
Query:   25 PLVYQQTPRHLLRTCELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGA-QIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 309
            PL     P +  R  E E+ H RWAML   G + PE L       G   W KA       +G   YLGNP  +   ++  I A + + + F E  R
Sbjct:   70 PLGLATVPENFERFKESEIYHCRWAMLCVPGVLVPEAL-------GLGNWVKAQEWAALPDGQATYLGNP--VPWGNLPTILAIEFLAIAFAEQQR 156          
BLAST of BQ623545 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.058e-20
Identity = 34/62 (54.84%), Postives = 43/62 (69.35%), Query Frame = 2
Query:  353 PGGA-FDPLGLAD-DPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADP 532
            PGG  FDPLG     P +  EL+ KE+KNGRLAM ++ G + Q I TG GPI+NL+ H+ADP
Sbjct:  197 PGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258          

HSP 2 Score: 50.0618 bits (118), Expect = 7.058e-20
Identity = 32/95 (33.68%), Postives = 45/95 (47.37%), Query Frame = 1
Query:   25 PLVYQQTPRHLLRTCELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 309
            PL     P  L    + E++HSRWAMLGA G   PE L+K GV      W+ AG Q       +Y  +           ++  ++VL+G+ EG R
Sbjct:   90 PLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV-LNTPSWYTAGEQ-------EYFTDTT--------TLFVIELVLIGWAEGRR 168          
BLAST of BQ623545 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.442e-19
Identity = 34/62 (54.84%), Postives = 43/62 (69.35%), Query Frame = 2
Query:  353 PGGA-FDPLGLAD-DPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADP 532
            PGG  FDPLG     P +  EL+ KE+KNGRLAM ++ G + Q I TG GPI+NL+ H+ADP
Sbjct:  197 PGGLWFDPLGWGSGSPAKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLADP 258          

HSP 2 Score: 47.3654 bits (111), Expect = 4.442e-19
Identity = 30/95 (31.58%), Postives = 45/95 (47.37%), Query Frame = 1
Query:   25 PLVYQQTPRHLLRTCELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 309
            PL     P  L    + E++H RWAMLGA G   PE+L+K G+      W+ AG Q       +Y  +           ++  ++VL+G+ EG R
Sbjct:   90 PLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGI-LNTPSWYTAGEQ-------EYFTDTT--------TLFIVELVLIGWAEGRR 168          
BLAST of BQ623545 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.036e-17
Identity = 34/62 (54.84%), Postives = 46/62 (74.19%), Query Frame = 2
Query:  353 PGGAF-DPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPV 535
            PGG F DPLGLA DP++ A+L++ E+K+ RLAM +  GF VQA  TGKGP+ N   H++DP+
Sbjct:  218 PGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPL 279          

HSP 2 Score: 37.7354 bits (86), Expect = 1.036e-17
Identity = 29/80 (36.25%), Postives = 42/80 (52.50%), Query Frame = 1
Query:   70 ELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 309
            E E+IH RWAML  LG +  E L+  GV      W  AG ++    G  YLG P      ++  IW  +V+++G++E  R
Sbjct:  138 ECELIHGRWAMLATLGALSVEWLT--GV-----TWQDAG-KVELVDGSSYLGQPLPFSISTL--IW-IEVLVIGYIEFQR 206          
BLAST of BQ623545 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.348e-17
Identity = 34/62 (54.84%), Postives = 44/62 (70.97%), Query Frame = 2
Query:  353 PGGAF-DPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADPV 535
            PGG F DPLGLA DP + A+L++ E+K+ RLAM    GF VQA  TGKGP+ N   H++DP+
Sbjct:  215 PGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPL 276          

HSP 2 Score: 39.2762 bits (90), Expect = 1.348e-17
Identity = 31/85 (36.47%), Postives = 44/85 (51.76%), Query Frame = 1
Query:   55 LLRTCELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 309
            L R  E E+IH RWAML  LG +  E L+  GV      W  AG ++    G  YLG P      ++  IW  +V+++G++E  R
Sbjct:  130 LQRFRECELIHGRWAMLATLGAITVEWLT--GV-----TWQDAG-KVELVDGSSYLGQPLPFSISTL--IW-IEVLVIGYIEFQR 203          
BLAST of BQ623545 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 1.516e-15
Identity = 29/53 (54.72%), Postives = 37/53 (69.81%), Query Frame = 2
Query:  353 PGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL 511
            PGG FDPLGLA DP++   LK+ E+K+ RLAM +   F +QA  TGKGP+  L
Sbjct:  219 PGGYFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPVSFL 271          

HSP 2 Score: 41.9726 bits (97), Expect = 1.516e-15
Identity = 30/80 (37.50%), Postives = 42/80 (52.50%), Query Frame = 1
Query:   70 ELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 309
            E E+IH RWAMLG LG +  E L+  G+      W  AG     EG   YLG P      ++  IW  +V+++G++E  R
Sbjct:  139 ECELIHGRWAMLGTLGAIAVEALT--GI-----AWQDAGKVELVEGS-SYLGQPLPFSLTTL--IW-IEVLVVGYIEFQR 207          
BLAST of BQ623545 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 55.0694 bits (131), Expect = 5.052e-12
Identity = 28/54 (51.85%), Postives = 38/54 (70.37%), Query Frame = 2
Query:  353 PGGAFDPLGLADDPDQFA-ELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENL 511
            PGG FDPL LA + ++ A  LK  E+K+ RLAM S FG+ VQA+ TG+G + +L
Sbjct:  214 PGGVFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGVQALSTGEGALGSL 267          

HSP 2 Score: 35.8094 bits (81), Expect = 5.052e-12
Identity = 31/85 (36.47%), Postives = 39/85 (45.88%), Query Frame = 1
Query:   55 LLRTCELEVIHSRWAMLGALGCVFPEILSKNGVKFGEAVWFKAGAQIFSEGGLDYLGNPNLIHAQSILAIWACQVVLMGFVEGYR 309
            L R  E E+IH RWAML  LG +  E  +  GV      W +AG       G  Y G   L    SI  +   +V+L+G  E YR
Sbjct:  130 LARFRECELIHGRWAMLACLGALVAE--ATTGVS-----WVEAGK--VELDGASYAG---LSLPFSITQLIWIEVILVGGAEFYR 202          
BLAST of BQ623545 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.928e-11
Identity = 36/60 (60.00%), Postives = 40/60 (66.67%), Query Frame = 2
Query:  353 PGGAFDPLGLADDPDQFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHIADP 532
            PGG F+PL  A  P Q  E K KEL NGRLAM +  GF VQ  VTGKGP ENL  H++DP
Sbjct:  186 PGGIFNPLNFA--PTQ--EAKEKELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDP 241          
The following BLAST results are available for this feature:
BLAST of BQ623545 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
CB121_HORVU1.461e-2060.00Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB12_PETHY7.058e-2054.84Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB12_SOLLC4.442e-1954.84Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB4A_ARATH1.036e-1754.84Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB4B_ARATH1.348e-1754.84Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB4C_ARATH1.516e-1554.72Chlorophyll a-b binding protein CP29.3, chloroplas... [more]
CB29_CHLRE5.052e-1251.85Chlorophyll a-b binding protein CP29 OS=Chlamydomo... [more]
CB24_ARATH9.928e-1160.00Chlorophyll a-b binding protein 4, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00636 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00636 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623545 ID=BQ623545; Name=BQ623545; organism=Citrus sinensis; type=EST; length=665bp
TCCCTGGTGACTATGGCTGGGATACCGCTGGTTTATCAGCAGACCCCGAG
ACATTTGCTAAGAACCTGTGAGCTAGAGGTGATCCACAGCAGATGGGCAA
TGCTTGGAGCTCTTGGCTGCGTCTTCCCTGAAATCCTCTCCAAGAATGGA
GTGAAGTTCGGCGAAGCAGTTTGGTTCAAGGCTGGCGCTCAAATATTCTC
TGAAGGTGGCCTTGACTATCTTGGCAACCCCAACCTCATTCATGCTCAGA
GCATTTTGGCTATCTGGGCCTGCCAGGTTGTGCTTATGGGTTTTGTTGAA
GGATACAGAATTGGTGGCGGTCCTCTTGGTGAAGGACTTGACCCACTTTA
CCCCTGGTGGTGCTTTTGACCCACTTGGTTTGGCTGATGACCCCGATCAA
TTTGCTGAGTTGAAGGTCAAGGAGCTCAAGAATGGCCGTCTGGCTATGTT
CTCCATGTTTGGATTCTTTGTTCAGGCTATTGTCACTGGGAAGGGTCCAA
TTGAGAACCTCTACGACCACATTGCTGATCCTGTGGCCCACAATGCCTGG
GCTTATGCCACTAACTTTGTTCCCGGAAGTAAAGAACTCATGACTTGATG
GGGTCTTTTCAGCTGGAACATATTCTATGTATCGTATGTGCTTTTGTGGA
AACTCTGCATGGACT
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