BQ623547

Overview
NameBQ623547
Unique NameBQ623547
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length572
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9517 contig Csv1_Contig9517:402..972. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623547 vs. ExPASy Swiss-Prot
Match: FPPS_GIBFU (Farnesyl pyrophosphate synthetase OS=Gibberella fujikuroi GN=FPPS PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 1.300e-36
Identity = 78/148 (52.70%), Postives = 97/148 (65.54%), Query Frame = 3
Query:    6 DDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACAL----LMAGENLDKHVEVKDILVQMGIYFQVQDDFLD 437
            DDIMD S TRRGQPCW+R   VGMIA ND  +L + I  +LK +FR  P Y DL++ F+E  FQT  GQ+ DL+T  E   +L  +SL  +  IV YKTAYYSFYLPVA AL    L    NL    + +DIL+ +G YFQ+QDD+LD
Sbjct:   95 DDIMDSSITRRGQPCWYRQEGVGMIAINDAFMLESAIYTLLKKYFRSHPAYFDLIESFHETTFQTELGQLCDLLTAPEDNVNLDNFSLEKYSFIVIYKTAYYSFYLPVALALHQLNLATPSNLK---QAEDILIPLGEYFQIQDDYLD 239          

HSP 2 Score: 26.5646 bits (57), Expect = 1.300e-36
Identity = 11/22 (50.00%), Postives = 16/22 (72.73%), Query Frame = 2
Query:  506 LVVKALELCNEEQKKLVHENYG 571
            LV +AL +   EQ+K++ ENYG
Sbjct:  262 LVNQALAVATPEQRKILEENYG 283          
BLAST of BQ623547 vs. ExPASy Swiss-Prot
Match: GGPPS_SCHPO (Geranylgeranyl pyrophosphate synthetase OS=Schizosaccharomyces pombe GN=spo9 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.761e-32
Identity = 67/145 (46.21%), Postives = 91/145 (62.76%), Query Frame = 3
Query:    6 DDIMDGSHTRRGQPCWFRVPKVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAGENLDKHVEVKDILVQ-MGIYFQVQDDFLD 437
            DDIMD S  RRG  CW+ V  V   A N+  LL   I  +++ +FR+ PYYVDLLD F EV F T  GQ  DL+++ +GE  L  + L  +  I+ YKT++YSFYLP+ CALL++  +  K  +    L + +G YFQVQDD+LD
Sbjct:  100 DDIMDQSIKRRGLDCWYLVVGVRR-AINESQLLEACIPLLIRKYFRNMPYYVDLLDTFREVTFLTELGQQEDLLSSRDGEASLRSFDLMKYDFIITYKTSFYSFYLPIKCALLLSRNSNQKAYDTTIKLSKLLGYYFQVQDDYLD 243          

HSP 2 Score: 36.5798 bits (83), Expect = 1.761e-32
Identity = 14/24 (58.33%), Postives = 18/24 (75.00%), Query Frame = 1
Query:  442 FGSPEVIGKVGTDIEDYKCSWVGC 513
            FG   V+GKVG DI+D KC+W+ C
Sbjct:  245 FGDYTVLGKVGMDIQDNKCTWLVC 268          
BLAST of BQ623547 vs. ExPASy Swiss-Prot
Match: Y8742_DICDI (Probable farnesyl diphosphate synthase DDB_G0268742 OS=Dictyostelium discoideum GN=DDB_G0268742 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 2.260e-31
Identity = 63/172 (36.63%), Postives = 94/172 (54.65%), Query Frame = 3
Query:    6 DDIMDGSHTRRGQPCWFRVP--------KVGMIAANDGVLLRNHISRILKNHFRDKPYYVDLLDLFNEVEFQTASGQMIDLITTIEGEKDLSKYSLPLHRRIVQYKTAYYSFYLPVACALLMAG---------------ENLDKHVE-----VKDILVQMGIYFQVQDDFLD 437
            DDIMD   TRRG+ CW+R P        KVGM+A ND VL+ + +  ILK +F++K YYVDL +LF+E  F TA+GQ++D  +      D + ++   + +I   K++++ FYL +  A+L+                 E  DK  E     +K+I   +GIY Q QDD+ D
Sbjct:  114 DDIMDNGLTRRGELCWYRHPSPFNPTEHKVGMLAINDSVLIESFLFFILKKYFKNKSYYVDLFELFHESIFYTATGQLLDSSSFHLKRGDFTNFTFENYSQICINKSSHHVFYLQIKIAILLTDIMDNNEKQKDDTTCKEEKDKEKEQEEELIKNICFNLGIYGQAQDDYFD 285          

HSP 2 Score: 44.669 bits (104), Expect = 2.260e-31
Identity = 17/27 (62.96%), Postives = 23/27 (85.19%), Query Frame = 1
Query:  442 FGSPEVIGKVGTDIEDYKCSWVGCKSS 522
            FG P+VIGK GTDI++ KCSW+ CK++
Sbjct:  287 FGDPKVIGKTGTDIQENKCSWLICKAN 313          

HSP 3 Score: 24.2534 bits (51), Expect = 2.260e-31
Identity = 9/22 (40.91%), Postives = 14/22 (63.64%), Query Frame = 2
Query:  506 LVVKALELCNEEQKKLVHENYG 571
            L+ KA  +CN +Q   + +NYG
Sbjct:  308 LICKANTICNNDQLNQLKKNYG 329          
The following BLAST results are available for this feature:
BLAST of BQ623547 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
FPPS_GIBFU1.300e-3652.70Farnesyl pyrophosphate synthetase OS=Gibberella fu... [more]
GGPPS_SCHPO1.761e-3246.21Geranylgeranyl pyrophosphate synthetase OS=Schizos... [more]
Y8742_DICDI2.260e-3136.63Probable farnesyl diphosphate synthase DDB_G026874... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00638 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00638 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623547 ID=BQ623547; Name=BQ623547; organism=Citrus sinensis; type=EST; length=572bp
TTCTTGATGATATCATGGATGGCTCTCATACACGCCGTGGTCAACCTTGC
TGGTTCAGAGTCCCCAAGGTTGGTATGATTGCTGCAAATGATGGTGTATT
ACTACGCAACCATATCTCCAGAATTCTCAAGAATCATTTTAGAGACAAGC
CTTATTACGTGGACCTGTTGGATTTATTTAATGAGGTGGAATTTCAAACA
GCTTCAGGACAAATGATAGACTTAATTACCACAATCGAAGGAGAGAAAGA
TCTATCGAAGTACTCATTGCCACTTCATCGTCGCATTGTTCAGTACAAAA
CTGCTTACTATTCATTTTACCTTCCAGTTGCTTGTGCATTACTTATGGCA
GGTGAGAATCTTGACAAACATGTTGAGGTCAAGGACATCTTAGTTCAAAT
GGGTATCTATTTTCAAGTACAGGATGATTTTCTGGATTGGGTTTGGTTCT
CCTGAAGTTATTGGCAAGGTTGGAACTGATATTGAAGATTACAAGTGTTC
TTGGGTTGGTTGTAAAAGCTCTGGAACTTTGTAACGAGGAACAAAAGAAA
TTGGTCCATGAGAACTATGGAA
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