BQ623551

Overview
NameBQ623551
Unique NameBQ623551
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length604
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623551_ssr267 microsatellite BQ623551_ssr267:267..278. BLAST: Citrus ESTs to Prunus persica proteins V1
BQ623551_ssr286 microsatellite BQ623551_ssr286:286..297. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1628 contig Csv1_Contig1628:82..686. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623551 vs. ExPASy Swiss-Prot
Match: EF1D_SHEEP (Elongation factor 1-delta OS=Ovis aries GN=EEF1D PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.469e-15
Identity = 36/52 (69.23%), Postives = 44/52 (84.62%), Query Frame = 2
Query:  404 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTI 559
            +LLDVKPWDDETDM +LE  VRSV++ GL WG+SKLVPVGYGI+K+QI   +
Sbjct:  197 ILLDVKPWDDETDMAQLEACVRSVQLDGLVWGSSKLVPVGYGIRKLQIQCVV 248          
BLAST of BQ623551 vs. ExPASy Swiss-Prot
Match: EF1D_ARTSA (Elongation factor 1-delta OS=Artemia salina PE=1 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 1.919e-15
Identity = 36/57 (63.16%), Postives = 44/57 (77.19%), Query Frame = 2
Query:  404 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLV 574
            +LLD+KPWDDETDM  +E  VRS+ M GL WGASKLVPV +G+KK+QI   + DD V
Sbjct:  154 ILLDIKPWDDETDMGAMEREVRSIAMDGLIWGASKLVPVAFGVKKLQISCVVEDDKV 210          
BLAST of BQ623551 vs. ExPASy Swiss-Prot
Match: EF1B_SCHPO (Elongation factor 1-beta OS=Schizosaccharomyces pombe GN=tef5 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.506e-15
Identity = 37/57 (64.91%), Postives = 45/57 (78.95%), Query Frame = 2
Query:  404 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLV 574
            V LDVKPWDDET M +LE+AVRS++M GL WG SKLVPVG+G+ K QI + + DD V
Sbjct:  131 VTLDVKPWDDETPMDELEKAVRSIQMDGLVWGLSKLVPVGFGVNKFQINLVVEDDKV 187          
BLAST of BQ623551 vs. ExPASy Swiss-Prot
Match: EF1D_DROME (Probable elongation factor 1-delta OS=Drosophila melanogaster GN=eEF1delta PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.226e-13
Identity = 31/57 (54.39%), Postives = 41/57 (71.93%), Query Frame = 2
Query:  404 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLV 574
            ++LDVKPWDDETD+K +E  +R +   GL WGASK VPV +GI+K+ I   + DD V
Sbjct:  173 IILDVKPWDDETDLKVMETEIRKITQDGLLWGASKFVPVAFGIQKLSISCVVEDDKV 229          
BLAST of BQ623551 vs. ExPASy Swiss-Prot
Match: EF1B_CANAL (Elongation factor 1-beta OS=Candida albicans GN=EFB1 PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.825e-13
Identity = 33/57 (57.89%), Postives = 44/57 (77.19%), Query Frame = 2
Query:  404 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLV 574
            V LDVKPWDDETD+ +L   V+++EM GL WGA + +PVG+GIKK+QI + + D LV
Sbjct:  130 VTLDVKPWDDETDLDELLTNVKAIEMEGLTWGAHQWIPVGFGIKKLQINLVVEDALV 186          
BLAST of BQ623551 vs. ExPASy Swiss-Prot
Match: EF1B_YEAST (Elongation factor 1-beta OS=Saccharomyces cerevisiae GN=EFB1 PE=1 SV=4)

HSP 1 Score: 72.4034 bits (176), Expect = 1.986e-12
Identity = 30/57 (52.63%), Postives = 44/57 (77.19%), Query Frame = 2
Query:  404 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLV 574
            V LDVKPWDDET+++++   V+++EM GL WGA + +P+G+GIKK+QI   + DD V
Sbjct:  123 VTLDVKPWDDETNLEEMVANVKAIEMEGLTWGAHQFIPIGFGIKKLQINCVVEDDKV 179          
BLAST of BQ623551 vs. ExPASy Swiss-Prot
Match: EF1B_TRYCR (25 kDa elongation factor 1-beta OS=Trypanosoma cruzi PE=2 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 8.343e-11
Identity = 29/58 (50.00%), Postives = 40/58 (68.97%), Query Frame = 2
Query:  404 VLLDVKPWDDETDMKKLEEAVRSVEMPGLFWGASKLVPVGYGIKKMQIMMTIIDDLVL 577
            +L DVKPWDD  D++ L   + +V+  GL WG  KLVPV +G+KK+Q ++ I DD VL
Sbjct:  139 ILFDVKPWDDTVDLQALANKLHAVKRDGLLWGDHKLVPVAFGVKKLQQLIVIEDDKVL 196          
The following BLAST results are available for this feature:
BLAST of BQ623551 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
EF1D_SHEEP1.469e-1569.23Elongation factor 1-delta OS=Ovis aries GN=EEF1D P... [more]
EF1D_ARTSA1.919e-1563.16Elongation factor 1-delta OS=Artemia salina PE=1 S... [more]
EF1B_SCHPO2.506e-1564.91Elongation factor 1-beta OS=Schizosaccharomyces po... [more]
EF1D_DROME5.226e-1354.39Probable elongation factor 1-delta OS=Drosophila m... [more]
EF1B_CANAL6.825e-1357.89Elongation factor 1-beta OS=Candida albicans GN=EF... [more]
EF1B_YEAST1.986e-1252.63Elongation factor 1-beta OS=Saccharomyces cerevisi... [more]
EF1B_TRYCR8.343e-1150.0025 kDa elongation factor 1-beta OS=Trypanosoma cru... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00642 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00642 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623551 ID=BQ623551; Name=BQ623551; organism=Citrus sinensis; type=EST; length=604bp
CACCTTTTCAGATCTCCACACAGAGTCAGGCCTTAAGTCTCTTGATCAGT
ATCTTTCTGGGAAATCTTATATCTCCGGTAATCAACTGACAAAAGATGAC
ATCAAGGTCTACGCTGCCGTTTTGGTGAAACCTGCTGATTCTTTCCCCAA
CGCCAGCAGGTGGTACGACAGCGTTTCTTCACATATCGCCCCAAGCTTCC
CTGGCAAAGCCGTTGGTGTGAGAGTTGATGGCAAAGGTGCTCCAGTTGAC
GCCGCCGCAGCCAAGCCTGCTGCTGCTGGAGGTGGTGATGATGATGATTT
GGATCTCTTCGGAGATGAGACTGAGGAGGATAAGAAAGCAGCAGAGGAGA
GGGAGGCTGCTAAAAAGCAATCATCCAAGAAGAAAGAGAGTGGAAAATCA
TCGGTACTTTTGGATGTAAAGCCTTGGGATGACGAGACAGACATGAAAAA
GCTAGAAGAGGCAGTTAGGAGTGTTGAGATGCCGGGTCTCTTTTGGGGAG
CATCAAAATTGGTCCCAGTCGGTTATGGGATTAAGAAGATGCAGATCATG
ATGACAATCATTGATGATCTTGTTCTGTGGATTCACTCATAGAGGACACC
TCAC
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