BQ623557

Overview
NameBQ623557
Unique NameBQ623557
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length645
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
BQ623557_ssr356 microsatellite BQ623557_ssr356:356..365. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig10229 contig Csv1_Contig10229:34..677. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623557 vs. ExPASy Swiss-Prot
Match: PSBP_FRIAG (Oxygen-evolving enhancer protein 2, chloroplastic OS=Fritillaria agrestis GN=PSBP PE=2 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.249e-71
Identity = 136/184 (73.91%), Postives = 155/184 (84.24%), Query Frame = 3
Query:   15 MASTQCFLHHHALSTTPARTSSSQRH--VSNIKPTQIVCRAQKQA-VQEDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDPNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFRP 557
            MAS+ CFL HHA ST PA TS +  H  V  IKP+Q++CRAQK +   E+  +AVSRRLALT+LIG+AAVG+K++PA+AAYGE+ANVFGK KTNTDFLPY GDGF L IP+KWNPSKE EFPGQVLRYEDNFD  SNVSV +TPT KKSITDYG+PEEFLS VDYLLGKQAYSGKT+SEGGF P
Sbjct:    1 MASSACFLLHHAPST-PATTSRTPSHRLVPTIKPSQLICRAQKSSDTDENSSTAVSRRLALTILIGSAAVGTKIAPANAAYGEAANVFGKAKTNTDFLPYTGDGFNLLIPAKWNPSKEVEFPGQVLRYEDNFDVTSNVSVTVTPTSKKSITDYGTPEEFLSTVDYLLGKQAYSGKTASEGGFDP 183          
BLAST of BQ623557 vs. ExPASy Swiss-Prot
Match: PSBP_NARPS (Oxygen-evolving enhancer protein 2, chloroplastic OS=Narcissus pseudonarcissus GN=PSBP PE=2 SV=1)

HSP 1 Score: 238.81 bits (608), Expect = 6.716e-69
Identity = 124/191 (64.92%), Postives = 141/191 (73.82%), Query Frame = 3
Query:   15 MASTQCFLHHHA-------LSTTPARTS---SSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDPNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFRP 557
            MAST CFLHHHA       LS T + T+     Q H + ++  +  C  +  A+       +SRRLALT+LIG AA+GS+VS ADAAYGESANVFGKPKTNTDF    GDGFK+ IPSKWNPSKE EFPGQVLRYEDNFD  SNV V++ PTDKKSI DYGSPE+FLS+VDYLLGKQAY GKT SEGGF P
Sbjct:    1 MASTACFLHHHAPSPATSNLSRTRSATNRDEQQQEHSARLQSPEADCATENDAL-------LSRRLALTILIGGAALGSRVSAADAAYGESANVFGKPKTNTDFQTVTGDGFKILIPSKWNPSKEVEFPGQVLRYEDNFDTTSNVGVMVNPTDKKSIKDYGSPEQFLSQVDYLLGKQAYFGKTISEGGFEP 184          

HSP 2 Score: 43.5134 bits (101), Expect = 6.716e-69
Identity = 23/39 (58.97%), Postives = 27/39 (69.23%), Query Frame = 1
Query:  541 KGGFDPDAVATANILEASV----RPPYYFLSVLTRTADG 645
            +GGF+P+AV TANILE S        YY + VLTRTADG
Sbjct:  179 EGGFEPNAVRTANILETSTPVVGGKDYYSIHVLTRTADG 217          
BLAST of BQ623557 vs. ExPASy Swiss-Prot
Match: PSBP_BRAJU (Oxygen-evolving enhancer protein 2, chloroplastic (Fragment) OS=Brassica juncea GN=PSBP PE=2 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 6.140e-67
Identity = 106/134 (79.10%), Postives = 123/134 (91.79%), Query Frame = 3
Query:  150 EDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDPNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGF 551
            EDD S VSRRLALT+L+GAAAVGSKVSPADAAYGE+ANVFGKPKTNTDF   NGDGF++ +P+KWNPS+E E+PGQVLRYEDNFD  SN++V++TPTDKKSITDYGSPEEFLS+V+YLLGKQAY G+T+ EGGF
Sbjct:    1 EDDTSTVSRRLALTLLVGAAAVGSKVSPADAAYGEAANVFGKPKTNTDFTAINGDGFQVQVPAKWNPSREVEYPGQVLRYEDNFDATSNLNVMVTPTDKKSITDYGSPEEFLSQVNYLLGKQAYFGETACEGGF 134          

HSP 2 Score: 50.0618 bits (118), Expect = 6.140e-67
Identity = 25/38 (65.79%), Postives = 31/38 (81.58%), Query Frame = 1
Query:  541 KGGFDPDAVATANILEASVR----PPYYFLSVLTRTAD 642
            +GGFD +AVATANILE +++     PYY+LSVLTRTAD
Sbjct:  131 EGGFDNNAVATANILETNIQDVGGKPYYYLSVLTRTAD 168          
BLAST of BQ623557 vs. ExPASy Swiss-Prot
Match: PSBP_WHEAT (Oxygen-evolving enhancer protein 2, chloroplastic OS=Triticum aestivum GN=PSBP PE=2 SV=1)

HSP 1 Score: 226.868 bits (577), Expect = 8.713e-66
Identity = 118/181 (65.19%), Postives = 139/181 (76.80%), Query Frame = 3
Query:   15 MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQI-VCRAQKQAVQEDDGSAV-SRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDPNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGF 551
            MAST CFLH      + AR ++S R    +  TQ+ VC+AQK      D + V SRR AL++L GAAA+  KVSPA AAYGE+ANVFGK K NTDF+ Y+G+GFKL IP+KWNPSKEREFPGQVLRYEDNFD  SN+SVII PT KK+ITDYGSPEEFLS+V +LLG+Q+Y GKT SEGGF
Sbjct:    1 MASTSCFLHQ-----STARLAASARPAPAVGRTQLFVCKAQKNDEAASDAAVVTSRRAALSLLAGAAAIAVKVSPAAAAYGEAANVFGKAKKNTDFVAYSGEGFKLMIPAKWNPSKEREFPGQVLRYEDNFDATSNLSVIINPTTKKTITDYGSPEEFLSQVGFLLGQQSYGGKTDSEGGF 176          

HSP 2 Score: 45.0542 bits (105), Expect = 8.713e-66
Identity = 23/39 (58.97%), Postives = 29/39 (74.36%), Query Frame = 1
Query:  541 KGGFDPDAVATANILEASV----RPPYYFLSVLTRTADG 645
            +GGF+ DAVATAN+LE+S        YY ++VLTRTADG
Sbjct:  173 EGGFESDAVATANVLESSAPVVDGKQYYSITVLTRTADG 211          
BLAST of BQ623557 vs. ExPASy Swiss-Prot
Match: PSBP_CHLRE (Oxygen-evolving enhancer protein 2, chloroplastic OS=Chlamydomonas reinhardtii GN=PSBP PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 4.630e-42
Identity = 95/181 (52.49%), Postives = 118/181 (65.19%), Query Frame = 3
Query:   15 MASTQCFLHHHALSTTPARTSSSQRHVSNIKPTQIVCRAQKQAVQEDDGSAVSRRLALTVLIGAAAVGSKVSPADAAYGESANVFGKPKTNTDFLPYNGDGFKLSIPSKWNPSKEREFPGQVLRYEDNFDPNSNVSVIITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGFRP 557
            MA+  C   + A +  P    +S+R       + +V RA         GS VSRR AL    GAAA+ S  SPA+AAYG+SANVFGK    + F+PY GDGF L +P+KWNPSKE +FPG +LRYEDNFD  +N+ VI   TDKK+I D+GS ++FL  V YLLGKQAYSG+T SEGGF P
Sbjct:    1 MATALC---NKAFAAAPVARPASRR-------SAVVVRAS--------GSDVSRRAALAGFAGAAALVSS-SPANAAYGDSANVFGKVTNKSGFVPYAGDGFALLLPAKWNPSKENDFPGVILRYEDNFDAVNNLVVIAQDTDKKAIADFGSQDKFLESVSYLLGKQAYSGETQSEGGFAP 162          
BLAST of BQ623557 vs. ExPASy Swiss-Prot
Match: PSBP2_ARATH (Putative oxygen-evolving enhancer protein 2-2 OS=Arabidopsis thaliana GN=PSBP2 PE=5 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 1.934e-22
Identity = 35/42 (83.33%), Postives = 41/42 (97.62%), Query Frame = 3
Query:  426 IITPTDKKSITDYGSPEEFLSKVDYLLGKQAYSGKTSSEGGF 551
            +ITPTDKKSITDYGSPE+FLS+V+YLLGKQAY G+T+SEGGF
Sbjct:    1 MITPTDKKSITDYGSPEQFLSQVNYLLGKQAYVGETASEGGF 42          

HSP 2 Score: 49.6766 bits (117), Expect = 1.934e-22
Identity = 26/39 (66.67%), Postives = 30/39 (76.92%), Query Frame = 1
Query:  541 KGGFDPDAVATANILEASVR----PPYYFLSVLTRTADG 645
            +GGFD +AVATANILE S +      YY+LSVLTRTADG
Sbjct:   39 EGGFDANAVATANILETSTQEIGGKEYYYLSVLTRTADG 77          
The following BLAST results are available for this feature:
BLAST of BQ623557 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
PSBP_FRIAG1.249e-7173.91Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_NARPS6.716e-6964.92Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_BRAJU6.140e-6779.10Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_WHEAT8.713e-6665.19Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP_CHLRE4.630e-4252.49Oxygen-evolving enhancer protein 2, chloroplastic ... [more]
PSBP2_ARATH1.934e-2283.33Putative oxygen-evolving enhancer protein 2-2 OS=A... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00648 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00648 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623557 ID=BQ623557; Name=BQ623557; organism=Citrus sinensis; type=EST; length=645bp
GGCGAAAAGAAAAAATGGCTTCAACTCAATGCTTCTTGCACCACCATGCA
CTCTCTACTACACCAGCAAGAACATCATCATCTCAGCGCCACGTGTCAAA
CATCAAGCCCACCCAGATTGTCTGCCGTGCGCAGAAGCAAGCTGTCCAAG
AAGATGACGGCAGCGCCGTCTCCCGCCGTTTGGCTCTGACGGTGCTCATT
GGTGCTGCTGCCGTCGGCTCCAAGGTCTCTCCTGCCGACGCTGCCTACGG
TGAATCTGCCAATGTGTTTGGTAAGCCAAAGACCAACACTGACTTCTTGC
CATACAATGGAGATGGATTCAAGCTGTCGATTCCCTCAAAATGGAACCCC
AGCAAAGAGAGAGAGTTCCCTGGTCAGGTTCTTAGATACGAAGACAACTT
TGATCCCAACAGCAATGTCTCCGTCATAATCACCCCAACTGACAAGAAAT
CCATCACTGACTACGGTTCCCCCGAGGAATTCCTCAGTAAGGTGGACTAC
TTGCTGGGAAAACAAGCCTATTCCGGCAAAACTTCGTCTGAAGGGGGGTT
TCGACCCTGATGCTGTGGCAACAGCTAACATCTTGGAGGCTTCAGTCCGA
CCACCATACTACTTCTTGTCTGTATTAACAAGAACTGCTGATGGA
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