BQ623567

Overview
NameBQ623567
Unique NameBQ623567
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length542
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7096 contig Csv1_Contig7096:628..1169. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623567 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 2.077e-41
Identity = 78/83 (93.98%), Postives = 82/83 (98.80%), Query Frame = 2
Query:    2 EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 250
            EV DPLYPGG+FDPLGLADDPEAFA++KVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  183 EVVDPLYPGGTFDPLGLADDPEAFADVKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265          
BLAST of BQ623567 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 2.712e-41
Identity = 79/83 (95.18%), Postives = 81/83 (97.59%), Query Frame = 2
Query:    2 EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 250
            EV DPLYPGGSFDPLGLA+DPEAFAELKVK IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  185 EVVDPLYPGGSFDPLGLAEDPEAFAELKVKHIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267          
BLAST of BQ623567 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 2.712e-41
Identity = 80/83 (96.39%), Postives = 81/83 (97.59%), Query Frame = 2
Query:    2 EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 250
            EV DPLYPGGSFDPLGLADD EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  182 EVVDPLYPGGSFDPLGLADDAEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264          
BLAST of BQ623567 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 2.296e-40
Identity = 77/83 (92.77%), Postives = 79/83 (95.18%), Query Frame = 2
Query:    2 EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 250
            EV DPLYPGGSFDPLGLADDPEAF ELKVKE+K GRLAM SMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWAYATNFVPGK
Sbjct:  183 EVVDPLYPGGSFDPLGLADDPEAFGELKVKELKKGRLAMLSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYATNFVPGK 265          
BLAST of BQ623567 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 3.916e-40
Identity = 77/83 (92.77%), Postives = 79/83 (95.18%), Query Frame = 2
Query:    2 EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 250
            EVTDP+YPGGSFDPLGLADDPEA AELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT   PGK
Sbjct:  174 EVTDPIYPGGSFDPLGLADDPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATKLCPGK 256          
BLAST of BQ623567 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 6.680e-40
Identity = 76/83 (91.57%), Postives = 80/83 (96.39%), Query Frame = 2
Query:    2 EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 250
            E+ DPLYPGGSFDPLGLA+DPE  AELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  182 EIVDPLYPGGSFDPLGLAEDPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264          
BLAST of BQ623567 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 6.680e-40
Identity = 77/83 (92.77%), Postives = 80/83 (96.39%), Query Frame = 2
Query:    2 EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 250
            EV DPLYPGGSFDPLGLA+ PEAFAELKVKE+KNGRLAMFSMFGFFV AIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  146 EVVDPLYPGGSFDPLGLAEVPEAFAELKVKELKNGRLAMFSMFGFFVPAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 228          
BLAST of BQ623567 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 8.725e-40
Identity = 77/83 (92.77%), Postives = 78/83 (93.98%), Query Frame = 2
Query:    2 EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 250
            EV DPLY GGSFDPLGL DDPE FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHL DPVNNNAWAYATNFVPGK
Sbjct:  182 EVVDPLYLGGSFDPLGLGDDPERFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVNNNAWAYATNFVPGK 264          
BLAST of BQ623567 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.140e-39
Identity = 78/83 (93.98%), Postives = 79/83 (95.18%), Query Frame = 2
Query:    2 EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 250
            E  D LYPGGSFDPLGLA DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  184 EAEDLLYPGGSFDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266          
BLAST of BQ623567 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.488e-39
Identity = 75/83 (90.36%), Postives = 79/83 (95.18%), Query Frame = 2
Query:    2 EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 250
            EV DP+YPGGSFDPLGLADDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL+DHLADP  NNAWAYATNF PGK
Sbjct:  183 EVEDPIYPGGSFDPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAVNNAWAYATNFTPGK 265          
The following BLAST results are available for this feature:
BLAST of BQ623567 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
CB29_MAIZE2.077e-4193.98Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB25_TOBAC2.712e-4195.18Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB22_HORVU2.712e-4196.39Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB22_MAIZE2.296e-4092.77Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_SOYBN3.916e-4092.77Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB23_APIGR6.680e-4091.57Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_PEA6.680e-4092.77Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB48_MAIZE8.725e-4092.77Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB21_SINAL1.140e-3993.98Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB23_POLMU1.488e-3990.36Chlorophyll a-b binding protein type 1 member F3, ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00658 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00658 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623567 ID=BQ623567; Name=BQ623567; organism=Citrus sinensis; type=EST; length=542bp
TGAAGTGACTGACCCATTGTACCCAGGTGGCAGCTTTGATCCATTGGGTT
TGGCTGATGACCCGGAGGCTTTTGCTGAGCTCAAGGTTAAGGAAATCAAG
AATGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCAT
TGTCACCGGCAAGGGACCGTTAGAGAACTTGGCCGACCACTTGGCCGACC
CTGTCAACAACAATGCCTGGGCCTACGCCACCAACTTTGTCCCCGGAAAG
TGAGCTTCGGTTGATAACATTAGTAGCGTGGAAATTGGAATTGAGAGTGA
TTGGTTATTGATGTGACTCTATTTCAACTTGCAAAACATGTGAATTATGT
AATGTACTGCTACTACCAGTTTGAGGGGATTGTATTTTCATTCAATCTCT
TGTCGCACGGTTCTAGTTCTAGTTCCTCCTCCTTACAGGTTGTGCCAGAA
TCTAGTTACAAGTTTACATCAAAAAAAAAAAAAGATAAAAAAATAGAAAA
ATATATAAAAAAAAAGAATATTAATTATAAATAAATATTAAA
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