BQ623567

Overview
NameBQ623567
Unique NameBQ623567
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length542
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7096 contig Csv1_Contig7096:628..1169. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623567 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 6.696e-32
Identity = 64/81 (79.01%), Postives = 70/81 (86.42%), Query Frame = 2
Query:    2 EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVP 244
            E  DPLYPG +FDPLGLADDP+ FAELKVKEIKNGRLAMF+  GFFVQAIVTGKGP+ENL DHLA+P  NNA+AYAT F P
Sbjct:  192 EGLDPLYPGEAFDPLGLADDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANPAENNAFAYATKFTP 272          
BLAST of BQ623567 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 8.745e-32
Identity = 65/81 (80.25%), Postives = 71/81 (87.65%), Query Frame = 2
Query:    2 EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVP 244
            E  DPLYPG SFDPLGLADDP+ FAELKVKEIKNGRLA FSMFGFFVQAIVTGKGP++NL DHLA+P  NNA+A+AT F P
Sbjct:  171 EGLDPLYPGESFDPLGLADDPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNNAFAFATKFTP 251          
BLAST of BQ623567 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 1.263e-30
Identity = 63/79 (79.75%), Postives = 67/79 (84.81%), Query Frame = 2
Query:   11 DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 247
            D LYPGG FDPLGLADDP+ FAELKVKEIKNGRLAMFS  GFFVQAIVTGKGP++NL DHLADP  N A+A AT F PG
Sbjct:  174 DTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNKAFASATKFTPG 252          
BLAST of BQ623567 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 6.929e-29
Identity = 66/82 (80.49%), Postives = 70/82 (85.37%), Query Frame = 2
Query:    2 EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 247
            EVTDPLYPG SFD LGLA+D EAFAELKVKE+KNGRLAMFSMFGFFVQAIV+ K  LENLADHL   VNNNA +  TNFVPG
Sbjct:  187 EVTDPLYPG-SFDSLGLAEDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHLGWTVNNNALSNVTNFVPG 267          
BLAST of BQ623567 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 3.331e-23
Identity = 51/68 (75.00%), Postives = 57/68 (83.82%), Query Frame = 2
Query:   11 DPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 214
            D L+PGG FDPLGLA DPE  A LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  198 DKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNN 265          
BLAST of BQ623567 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 4.350e-23
Identity = 54/82 (65.85%), Postives = 59/82 (71.95%), Query Frame = 2
Query:    2 EVTDPLYPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP-VNNNAWAYATNFVP 244
            E  D LYPGG FDPLGLADDP+ F ELKVKEIKNGRLAM  M GF+ QAIVTG+GP+EN   HL DP  +N   A  T F P
Sbjct:   40 EDLDRLYPGGPFDPLGLADDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLTALVTQFAP 121          
BLAST of BQ623567 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.447e-20
Identity = 45/69 (65.22%), Postives = 55/69 (79.71%), Query Frame = 2
Query:   11 DPLYPGGS-FDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 214
            DP YPGG  F+PLG   D ++  ELK+KEIKNGRLAM ++ G+F+QA+VTG GP +NL DHLADPVNNN
Sbjct:  197 DPAYPGGPLFNPLGFGKDEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNN 265          
BLAST of BQ623567 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.109e-18
Identity = 41/69 (59.42%), Postives = 54/69 (78.26%), Query Frame = 2
Query:   11 DPLYPGGSF-DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 214
            +P YPGG F +PLG   D ++  ELK+KE+KNGRLAM ++ G+F+Q +VTG GP +NL DH+ADPVNNN
Sbjct:  199 NPAYPGGPFFNPLGFGKDEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNN 267          
BLAST of BQ623567 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.226e-17
Identity = 44/66 (66.67%), Postives = 50/66 (75.76%), Query Frame = 2
Query:   20 YPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 214
            YPGG+FDPLG + DP  F ELK+KEIKNGRLAM +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:  167 YPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 232          
BLAST of BQ623567 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.226e-17
Identity = 44/66 (66.67%), Postives = 51/66 (77.27%), Query Frame = 2
Query:   20 YPGGSFDPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 214
            YPGG+FDPLG + DP  F ELKVKEIKNGRLA+ ++ GF V Q+   G GPLENLA HLADP +NN
Sbjct:  168 YPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNN 233          
The following BLAST results are available for this feature:
BLAST of BQ623567 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 76
Match NameE-valueIdentityDescription
CB2_DUNSA6.696e-3279.01Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_CHLRE8.745e-3280.25Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNTE1.263e-3079.75Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_MALDO6.929e-2980.49Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB26_ARATH3.331e-2375.00Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB21_EUGGR4.350e-2365.85Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB13_SOLLC3.447e-2065.22Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA1.109e-1859.42Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB121_HORVU1.226e-1766.67Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB11_SOLLC1.226e-1766.67Chlorophyll a-b binding protein 6A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00658 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00658 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623567 ID=BQ623567; Name=BQ623567; organism=Citrus sinensis; type=EST; length=542bp
TGAAGTGACTGACCCATTGTACCCAGGTGGCAGCTTTGATCCATTGGGTT
TGGCTGATGACCCGGAGGCTTTTGCTGAGCTCAAGGTTAAGGAAATCAAG
AATGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTCTTCGTTCAGGCCAT
TGTCACCGGCAAGGGACCGTTAGAGAACTTGGCCGACCACTTGGCCGACC
CTGTCAACAACAATGCCTGGGCCTACGCCACCAACTTTGTCCCCGGAAAG
TGAGCTTCGGTTGATAACATTAGTAGCGTGGAAATTGGAATTGAGAGTGA
TTGGTTATTGATGTGACTCTATTTCAACTTGCAAAACATGTGAATTATGT
AATGTACTGCTACTACCAGTTTGAGGGGATTGTATTTTCATTCAATCTCT
TGTCGCACGGTTCTAGTTCTAGTTCCTCCTCCTTACAGGTTGTGCCAGAA
TCTAGTTACAAGTTTACATCAAAAAAAAAAAAAGATAAAAAAATAGAAAA
ATATATAAAAAAAAAGAATATTAATTATAAATAAATATTAAA
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