BQ623568

Overview
NameBQ623568
Unique NameBQ623568
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length717
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3190 contig Csv1_Contig3190:3..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623568 vs. ExPASy Swiss-Prot
Match: EPA2A_XENLA (Embryonic polyadenylate-binding protein 2-A OS=Xenopus laevis GN=epabp2-A PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.097e-25
Identity = 59/119 (49.58%), Postives = 82/119 (68.91%), Query Frame = 2
Query:  269 KEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQ-----YRPR-RFNPYMGYRGRRPYVPPY 604
            K+E D RSV+VGNVDY  T ++++ HF SCG++NR+TIL DKF G PKG+AY+EF E ++V  A+ ++E+   GR +KVLPKRTN+PG+       +R R R N     RG+RP   P+
Sbjct:   87 KKEIDKRSVYVGNVDYGGTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAVTMDETVFRGRTIKVLPKRTNMPGISSTDRGGFRGRPRGNRGNYQRGQRPRGRPF 205          
BLAST of BQ623568 vs. ExPASy Swiss-Prot
Match: EPAB2_HUMAN (Embryonic polyadenylate-binding protein 2 OS=Homo sapiens GN=PABPNL1 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.527e-23
Identity = 63/136 (46.32%), Postives = 81/136 (59.56%), Query Frame = 2
Query:  200 QAKVEKEMGAAQ----DPANV----AANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMGYRG 580
            Q + E+E G A      P  V    +     K EAD RSV+VGNVDY  + EE++ HF  CG V+RVTIL DKF G PKG+AY+EF    +VQ A++L++S   GR +KVLPKRTN PG+          + G RG
Sbjct:  110 QQQAEEEEGTAAGQLLSPETVGCPLSGTPEEKVEADHRSVYVGNVDYGGSAEELEAHFSRCGEVHRVTILCDKFSGHPKGYAYIEFATKGSVQAAVELDQSLFRGRVIKVLPKRTNFPGISSTDRGGLRGHPGSRG 245          
BLAST of BQ623568 vs. ExPASy Swiss-Prot
Match: PABP2_DICDI (Polyadenylate-binding protein 2 OS=Dictyostelium discoideum GN=pabpn1 PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.912e-22
Identity = 57/108 (52.78%), Postives = 76/108 (70.37%), Query Frame = 2
Query:  269 KEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVP-GMKQ-YRPRRFNPYMGYRGR 583
            +EE DSRSV+VGNVDY  T +++  +FQSCGTVNR+TIL+DK  G PKG  YVEF+  +++  A+ LN+S  + RQLK+ PKRTN+P  M+Q   P     + G RGR
Sbjct:   95 QEEIDSRSVYVGNVDYKSTHDQILAYFQSCGTVNRITILSDKTTGHPKGCCYVEFVNKESIINAMALNDSFFNERQLKITPKRTNLPYYMRQGVLPPGRGGFRGGRGR 202          
BLAST of BQ623568 vs. ExPASy Swiss-Prot
Match: EPAB2_RAT (Embryonic polyadenylate-binding protein 2 OS=Rattus norvegicus GN=Pabpnl1 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 8.379e-22
Identity = 50/87 (57.47%), Postives = 65/87 (74.71%), Query Frame = 2
Query:  275 EADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGM 532
            EAD RSV+VGNVDY  +  E++ +F  CG ++RVTIL DKF G PKG+AY+EF    +VQ A++L+ES   GR +KVLPKRTN PG+
Sbjct:  135 EADHRSVYVGNVDYGGSAAELEAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFASKSSVQAAVRLDESTFRGRVIKVLPKRTNFPGI 221          
BLAST of BQ623568 vs. ExPASy Swiss-Prot
Match: EPAB2_MOUSE (Embryonic polyadenylate-binding protein 2 OS=Mus musculus GN=Pabpnl1 PE=2 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.867e-21
Identity = 53/95 (55.79%), Postives = 69/95 (72.63%), Query Frame = 2
Query:  257 NQASKE--EADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGM 532
            ++ SKE  EAD RSVFVGNVDY  +  E++ +F  CG ++RVTIL DKF G PKG+AY+EF    +V+ A+ L+ES   GR +KVLPKRTN PG+
Sbjct:  131 SRTSKENVEADHRSVFVGNVDYGGSAAELEAYFSPCGEIHRVTILCDKFSGHPKGYAYIEFASHRSVKAAVGLDESTFRGRVIKVLPKRTNFPGI 225          
BLAST of BQ623568 vs. ExPASy Swiss-Prot
Match: SGN1_YEAST (RNA-binding protein SGN1 OS=Saccharomyces cerevisiae GN=SGN1 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.843e-20
Identity = 53/126 (42.06%), Postives = 77/126 (61.11%), Query Frame = 2
Query:  263 ASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDK-FGQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQ--------YRPRRFN-PYMGYRG--RRPYVPPY 604
            A + EADSRS+FVGN+    TPE+++ HF+ CG + R+T+L D+  G PKG+ Y+EF      ++ALQLN  EL G+++ V  KRTN+PG  +        ++  ++N P M Y      PY PPY
Sbjct:   56 AHQLEADSRSIFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEFESPAYREKALQLNGGELKGKKIAVSRKRTNIPGFNRHYNSQNQYFQQWQWNYPLMAYPNPDTFPYYPPY 181          
BLAST of BQ623568 vs. ExPASy Swiss-Prot
Match: YQOC_CAEEL (Putative RNA-binding protein EEED8.12 OS=Caenorhabditis elegans GN=EEED8.12 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.758e-17
Identity = 47/112 (41.96%), Postives = 70/112 (62.50%), Query Frame = 2
Query:  200 QAKVEKEMGAAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGM 532
            Q K+ K + +A   A V   +  ++  D++SVF+GNVD+  T EEV++HF+ CG + R TI  DKF  + K FAY+EF +  +++ AL +N S    R + V  KRTN+PGM
Sbjct:   35 QNKMAKNLESA---AYVPPTEEEQKAIDAKSVFIGNVDFNSTIEEVEEHFKGCGHIVRTTIPKDKFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRPIVVTAKRTNIPGM 143          
BLAST of BQ623568 vs. ExPASy Swiss-Prot
Match: YQO4_CAEEL (Putative RNA-binding protein EEED8.4 OS=Caenorhabditis elegans GN=EEED8.4 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.060e-16
Identity = 45/112 (40.18%), Postives = 70/112 (62.50%), Query Frame = 2
Query:  200 QAKVEKEMGAAQDPANVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGM 532
            Q K+ K + +A   A V   +  ++  D++SVF+GNVD+  T EE+++HF+ CG + + TI  DKF  + K FAY+EF +  +++ AL +N S    R + V  KRTN+PGM
Sbjct:   29 QNKMAKHLESA---AYVPPTEEEQKAIDAKSVFIGNVDFNSTIEEIEEHFKGCGQIVKTTIPKDKFTKKQKNFAYIEFDDSSSIENALVMNGSLFRSRPIVVTAKRTNIPGM 137          
BLAST of BQ623568 vs. ExPASy Swiss-Prot
Match: RBM34_HUMAN (RNA-binding protein 34 OS=Homo sapiens GN=RBM34 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 6.019e-12
Identity = 37/76 (48.68%), Postives = 49/76 (64.47%), Query Frame = 2
Query:  281 DSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVL 505
            D RSVFVGN+ Y      +++HF  CG++  V I+ DK  G  KGF YV F   D+V  AL+LN SEL GR+L+V+
Sbjct:  285 DKRSVFVGNLPYKVEESAIEKHFLDCGSIMAVRIVRDKMTGIGKGFGYVLFENTDSVHLALKLNNSELMGRKLRVM 360          
BLAST of BQ623568 vs. ExPASy Swiss-Prot
Match: RBM34_RAT (RNA-binding protein 34 OS=Rattus norvegicus GN=Rbm34 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.095e-11
Identity = 41/99 (41.41%), Postives = 60/99 (60.61%), Query Frame = 2
Query:  245 NVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQ 538
            ++A+  AS+   D RSVFVGN+ Y      +++HF  CG++  V I+ +   G  +GF YV F   DAV  AL+LN SEL GR+L+V+ +  N   +KQ
Sbjct:  274 DLASETASR---DKRSVFVGNLPYRVDESALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALKLNNSELMGRKLRVM-RSVNKEKLKQ 368          
The following BLAST results are available for this feature:
BLAST of BQ623568 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
EPA2A_XENLA8.097e-2549.58Embryonic polyadenylate-binding protein 2-A OS=Xen... [more]
EPAB2_HUMAN1.527e-2346.32Embryonic polyadenylate-binding protein 2 OS=Homo ... [more]
PABP2_DICDI4.912e-2252.78Polyadenylate-binding protein 2 OS=Dictyostelium d... [more]
EPAB2_RAT8.379e-2257.47Embryonic polyadenylate-binding protein 2 OS=Rattu... [more]
EPAB2_MOUSE1.867e-2155.79Embryonic polyadenylate-binding protein 2 OS=Mus m... [more]
SGN1_YEAST7.843e-2042.06RNA-binding protein SGN1 OS=Saccharomyces cerevisi... [more]
YQOC_CAEEL4.758e-1741.96Putative RNA-binding protein EEED8.12 OS=Caenorhab... [more]
YQO4_CAEEL1.060e-1640.18Putative RNA-binding protein EEED8.4 OS=Caenorhabd... [more]
RBM34_HUMAN6.019e-1248.68RNA-binding protein 34 OS=Homo sapiens GN=RBM34 PE... [more]
RBM34_RAT5.095e-1141.41RNA-binding protein 34 OS=Rattus norvegicus GN=Rbm... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00659 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00659 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623568 ID=BQ623568; Name=BQ623568; organism=Citrus sinensis; type=EST; length=717bp
GGAATACAGAAGAGAGAGAATGGAGGAAGAAGAGCACGAGGTTTACGGAG
GCGAAATCCCTGACGTGGAAGGTGACATGGACGCTCACAATACTGACGTC
GACATGTCGGCGGCCGATGACGACGCCGTCAAGGAGCTGGATGAGATGAA
GAAGCGGTTGAAGGAGATGGAGGAGGAAGCTGCTGCTCTTCGTGAGATGC
AAGCTAAGGTCGAGAAAGAGATGGGCGCTGCTCAAGATCCTGCTAATGTG
GCTGCTAATCAAGCAAGCAAAGAAGAGGCAGATTCACGATCAGTCTTTGT
TGGCAATGTAGATTATGCATGCACTCCTGAAGAAGTGCAGCAACATTTCC
AATCCTGTGGTACTGTAAACAGGGTAACTATTCTGACAGACAAGTTTGGC
CAGCCAAAGGGTTTTGCTTATGTGGAATTCCTTGAAATAGATGCTGTTCA
AGAGGCTCTCCAGTTGAATGAGTCTGAATTACATGGCCGTCAACTGAAGG
TTTTACCTAAGAGGACAAATGTCCCTGGTATGAAGCAGTATCGTCCAAGG
CGTTTCAATCCTTACATGGGGTACCGAGGCAGGAGGCCCTATGTACCTCC
TTATTTCTATTCACCTTATGGATATGGGGAAGGTTCCCAGGTTCCAAAGG
CCAATGAGGTACCTGCCCTACTACTAGCAGATTGTGCCTCCTGTTGAAAA
TGGGACATTTGTGGATC
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