BQ623568

Overview
NameBQ623568
Unique NameBQ623568
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length717
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3190 contig Csv1_Contig3190:3..718. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623568 vs. ExPASy Swiss-Prot
Match: RBM34_MOUSE (RNA-binding protein 34 OS=Mus musculus GN=Rbm34 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.095e-11
Identity = 41/99 (41.41%), Postives = 60/99 (60.61%), Query Frame = 2 
Query:  245 NVAANQASKEEADSRSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKF-GQPKGFAYVEFLEIDAVQEALQLNESELHGRQLKVLPKRTNVPGMKQ 538
            ++A+  AS+   D RSVFVGN+ Y      +++HF  CG++  V I+ +   G  +GF YV F   DAV  AL+LN SEL GR+L+V+ +  N   +KQ
Sbjct:  280 DLASETASR---DKRSVFVGNLPYKIEDSALEEHFLDCGSIVAVRIVRNPLTGVGRGFGYVLFENTDAVHLALKLNNSELMGRKLRVM-RSVNKEKLKQ 374
The following BLAST results are available for this feature:
BLAST of BQ623568 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
RBM34_MOUSE5.095e-1141.41RNA-binding protein 34 OS=Mus musculus GN=Rbm34 PE... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00659 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00659 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623568 ID=BQ623568; Name=BQ623568; organism=Citrus sinensis; type=EST; length=717bp
GGAATACAGAAGAGAGAGAATGGAGGAAGAAGAGCACGAGGTTTACGGAG
GCGAAATCCCTGACGTGGAAGGTGACATGGACGCTCACAATACTGACGTC
GACATGTCGGCGGCCGATGACGACGCCGTCAAGGAGCTGGATGAGATGAA
GAAGCGGTTGAAGGAGATGGAGGAGGAAGCTGCTGCTCTTCGTGAGATGC
AAGCTAAGGTCGAGAAAGAGATGGGCGCTGCTCAAGATCCTGCTAATGTG
GCTGCTAATCAAGCAAGCAAAGAAGAGGCAGATTCACGATCAGTCTTTGT
TGGCAATGTAGATTATGCATGCACTCCTGAAGAAGTGCAGCAACATTTCC
AATCCTGTGGTACTGTAAACAGGGTAACTATTCTGACAGACAAGTTTGGC
CAGCCAAAGGGTTTTGCTTATGTGGAATTCCTTGAAATAGATGCTGTTCA
AGAGGCTCTCCAGTTGAATGAGTCTGAATTACATGGCCGTCAACTGAAGG
TTTTACCTAAGAGGACAAATGTCCCTGGTATGAAGCAGTATCGTCCAAGG
CGTTTCAATCCTTACATGGGGTACCGAGGCAGGAGGCCCTATGTACCTCC
TTATTTCTATTCACCTTATGGATATGGGGAAGGTTCCCAGGTTCCAAAGG
CCAATGAGGTACCTGCCCTACTACTAGCAGATTGTGCCTCCTGTTGAAAA
TGGGACATTTGTGGATC
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