BQ623573

Overview
NameBQ623573
Unique NameBQ623573
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length364
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7096 contig Csv1_Contig7096:646..1008. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623573 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 1.964e-34
Identity = 63/65 (96.92%), Postives = 65/65 (100.00%), Query Frame = 3 
Query:   39 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 233
            DDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  205 DDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 269

HSP 2 Score: 31.5722 bits (70), Expect = 1.964e-34
Identity = 14/18 (77.78%), Postives = 14/18 (77.78%), Query Frame = 2 
Query:    2 YPGGSFDPLGLA**PGGF 55
            YPGGSFDPLGLA  P  F
Sbjct:  193 YPGGSFDPLGLADDPEAF 210
[Close]
BLAST of BQ623573 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 2.558e-34
Identity = 63/65 (96.92%), Postives = 65/65 (100.00%), Query Frame = 3 
Query:   39 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 233
            +DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  210 EDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 274

HSP 2 Score: 31.5722 bits (70), Expect = 2.558e-34
Identity = 14/18 (77.78%), Postives = 14/18 (77.78%), Query Frame = 2 
Query:    2 YPGGSFDPLGLA**PGGF 55
            YPGGSFDPLGLA  P  F
Sbjct:  198 YPGGSFDPLGLAEDPEAF 215
[Close]
BLAST of BQ623573 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.330e-34
Identity = 63/65 (96.92%), Postives = 65/65 (100.00%), Query Frame = 3 
Query:   39 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 233
            DDP+AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  214 DDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278

HSP 2 Score: 30.8018 bits (68), Expect = 3.330e-34
Identity = 13/18 (72.22%), Postives = 14/18 (77.78%), Query Frame = 2 
Query:    2 YPGGSFDPLGLA**PGGF 55
            YPGG+FDPLGLA  P  F
Sbjct:  202 YPGGNFDPLGLADDPDAF 219
[Close]
BLAST of BQ623573 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 3.333e-34
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = 3 
Query:   39 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 233
            DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL+NL DHLADPVNNNAWAYATNFVPGK
Sbjct:  203 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADPVNNNAWAYATNFVPGK 267

HSP 2 Score: 31.5722 bits (70), Expect = 3.333e-34
Identity = 14/18 (77.78%), Postives = 14/18 (77.78%), Query Frame = 2 
Query:    2 YPGGSFDPLGLA**PGGF 55
            YPGGSFDPLGLA  P  F
Sbjct:  191 YPGGSFDPLGLADDPEAF 208
[Close]
BLAST of BQ623573 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 3.333e-34
Identity = 63/65 (96.92%), Postives = 65/65 (100.00%), Query Frame = 3 
Query:   39 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 233
            +DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  203 EDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267

HSP 2 Score: 31.5722 bits (70), Expect = 3.333e-34
Identity = 14/18 (77.78%), Postives = 14/18 (77.78%), Query Frame = 2 
Query:    2 YPGGSFDPLGLA**PGGF 55
            YPGGSFDPLGLA  P  F
Sbjct:  191 YPGGSFDPLGLAEDPEAF 208
[Close]
BLAST of BQ623573 vs. ExPASy Swiss-Prot
Match: CB21_TOBAC (Chlorophyll a-b binding protein 16, chloroplastic OS=Nicotiana tabacum GN=CAB16 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 3.333e-34
Identity = 63/65 (96.92%), Postives = 65/65 (100.00%), Query Frame = 3 
Query:   39 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 233
            +DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  202 EDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 266

HSP 2 Score: 31.5722 bits (70), Expect = 3.333e-34
Identity = 14/18 (77.78%), Postives = 14/18 (77.78%), Query Frame = 2 
Query:    2 YPGGSFDPLGLA**PGGF 55
            YPGGSFDPLGLA  P  F
Sbjct:  190 YPGGSFDPLGLAEDPEAF 207
[Close]
BLAST of BQ623573 vs. ExPASy Swiss-Prot
Match: CB2D_SOLLC (Chlorophyll a-b binding protein 1D (Fragment) OS=Solanum lycopersicum GN=CAB1D PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 3.444e-34
Identity = 63/65 (96.92%), Postives = 65/65 (100.00%), Query Frame = 3 
Query:   39 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 233
            +DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:   52 EDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 116

HSP 2 Score: 31.5722 bits (70), Expect = 3.444e-34
Identity = 14/18 (77.78%), Postives = 14/18 (77.78%), Query Frame = 2 
Query:    2 YPGGSFDPLGLA**PGGF 55
            YPGGSFDPLGLA  P  F
Sbjct:   40 YPGGSFDPLGLAEDPEAF 57
[Close]
BLAST of BQ623573 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 4.341e-34
Identity = 62/65 (95.38%), Postives = 65/65 (100.00%), Query Frame = 3 
Query:   39 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 233
            DDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHL+DPVNNNAW+YATNFVPGK
Sbjct:  204 DDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWSYATNFVPGK 268

HSP 2 Score: 31.5722 bits (70), Expect = 4.341e-34
Identity = 14/18 (77.78%), Postives = 14/18 (77.78%), Query Frame = 2 
Query:    2 YPGGSFDPLGLA**PGGF 55
            YPGGSFDPLGLA  P  F
Sbjct:  192 YPGGSFDPLGLADDPEAF 209
[Close]
BLAST of BQ623573 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 4.341e-34
Identity = 63/65 (96.92%), Postives = 65/65 (100.00%), Query Frame = 3 
Query:   39 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 233
            DDPEAFAEL+VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  202 DDPEAFAELEVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266

HSP 2 Score: 31.5722 bits (70), Expect = 4.341e-34
Identity = 14/18 (77.78%), Postives = 14/18 (77.78%), Query Frame = 2 
Query:    2 YPGGSFDPLGLA**PGGF 55
            YPGGSFDPLGLA  P  F
Sbjct:  190 YPGGSFDPLGLADDPEAF 207
[Close]
BLAST of BQ623573 vs. ExPASy Swiss-Prot
Match: CB2C_SOLLC (Chlorophyll a-b binding protein 1C, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1C PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 4.342e-34
Identity = 63/65 (96.92%), Postives = 65/65 (100.00%), Query Frame = 3 
Query:   39 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 233
            +DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  201 EDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265

HSP 2 Score: 31.5722 bits (70), Expect = 4.342e-34
Identity = 14/18 (77.78%), Postives = 14/18 (77.78%), Query Frame = 2 
Query:    2 YPGGSFDPLGLA**PGGF 55
            YPGGSFDPLGLA  P  F
Sbjct:  189 YPGGSFDPLGLAEDPEAF 206
The following BLAST results are available for this feature:
BLAST of BQ623573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
CB22_PEA1.964e-3496.92Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB2B_PINSY2.558e-3496.92Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB2A_PINSY3.330e-3496.92Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB27_TOBAC3.333e-3496.92Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB23_PETSP3.333e-3496.92Chlorophyll a-b binding protein 22R, chloroplastic... [more]
CB21_TOBAC3.333e-3496.92Chlorophyll a-b binding protein 16, chloroplastic ... [more]
CB2D_SOLLC3.444e-3496.92Chlorophyll a-b binding protein 1D (Fragment) OS=S... [more]
CB28_PEA4.341e-3495.38Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB21_PETSP4.341e-3496.92Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB2C_SOLLC4.342e-3496.92Chlorophyll a-b binding protein 1C, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00664 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00664 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623573 ID=BQ623573; Name=BQ623573; organism=Citrus sinensis; type=EST; length=364bp
GTACCCAGGTGGCAGCTTTGATCCATTGGGTTTGGCGTGATGACCCGGAG
GCTTTTGCTGAGCTCAAGGTTAAGGAAATCAAGAATGGAAGGTTGGCTAT
GTTCTCCATGTTTGGTTTCTTCGTTCAGGCCATTGTCACCGGCAAGGGAC
CGTTAGAGAACTTGGCCGACCACTTGGCCGACCCTGTCAACAACAATGCC
TGGGCCTACGCCACCAACTTTGTCCCCGGAAAGTGAGCTTCGGTTGATAA
CATTAGTAGCGTGGAAATTGGAATTGAGAGTGATTGGTTATTGATGTGAC
TCTATTTCAACTTGCAAAACATGTGAATTATGTAATGTACTGCTACTACC
AGTTTGAGGGGATT
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