BQ623573

Overview
NameBQ623573
Unique NameBQ623573
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length364
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7096 contig Csv1_Contig7096:646..1008. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623573 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.785e-25
Identity = 50/63 (79.37%), Postives = 55/63 (87.30%), Query Frame = 3
Query:   39 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVP 227
            DDP+ FAELKVKEIKNGRLAMF+  GFFVQAIVTGKGP+ENL DHLA+P  NNA+AYAT F P
Sbjct:  210 DDPDTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANPAENNAFAYATKFTP 272          

HSP 2 Score: 26.9498 bits (58), Expect = 3.785e-25
Identity = 12/18 (66.67%), Postives = 13/18 (72.22%), Query Frame = 2
Query:    2 YPGGSFDPLGLA**PGGF 55
            YPG +FDPLGLA  P  F
Sbjct:  198 YPGEAFDPLGLADDPDTF 215          
BLAST of BQ623573 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 4.935e-25
Identity = 50/63 (79.37%), Postives = 56/63 (88.89%), Query Frame = 3
Query:   39 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVP 227
            DDP+ FAELKVKEIKNGRLA FSMFGFFVQAIVTGKGP++NL DHLA+P  NNA+A+AT F P
Sbjct:  189 DDPDTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNNAFAFATKFTP 251          

HSP 2 Score: 28.1054 bits (61), Expect = 4.935e-25
Identity = 13/18 (72.22%), Postives = 13/18 (72.22%), Query Frame = 2
Query:    2 YPGGSFDPLGLA**PGGF 55
            YPG SFDPLGLA  P  F
Sbjct:  177 YPGESFDPLGLADDPDTF 194          
BLAST of BQ623573 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 6.422e-25
Identity = 50/64 (78.12%), Postives = 54/64 (84.38%), Query Frame = 3
Query:   39 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 230
            DDP+ FAELKVKEIKNGRLAMFS  GFFVQAIVTGKGP++NL DHLADP  N A+A AT F PG
Sbjct:  189 DDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNKAFASATKFTPG 252          

HSP 2 Score: 29.261 bits (64), Expect = 6.422e-25
Identity = 13/18 (72.22%), Postives = 13/18 (72.22%), Query Frame = 2
Query:    2 YPGGSFDPLGLA**PGGF 55
            YPGG FDPLGLA  P  F
Sbjct:  177 YPGGPFDPLGLADDPDTF 194          
BLAST of BQ623573 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.988e-21
Identity = 50/64 (78.12%), Postives = 54/64 (84.38%), Query Frame = 3
Query:   39 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 230
            +D EAFAELKVKE+KNGRLAMFSMFGFFVQAIV+ K  LENLADHL   VNNNA +  TNFVPG
Sbjct:  204 EDTEAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHLGWTVNNNALSNVTNFVPG 267          
BLAST of BQ623573 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.706e-17
Identity = 39/52 (75.00%), Postives = 44/52 (84.62%), Query Frame = 3
Query:   42 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 197
            DPE  A LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  214 DPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNN 265          

HSP 2 Score: 26.5646 bits (57), Expect = 1.706e-17
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 2
Query:    2 YPGGSFDPLGLA 37
            +PGG FDPLGLA
Sbjct:  201 HPGGPFDPLGLA 212          
BLAST of BQ623573 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.776e-17
Identity = 40/64 (62.50%), Postives = 45/64 (70.31%), Query Frame = 3
Query:   39 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP-VNNNAWAYATNFVP 227
            DDP+ F ELKVKEIKNGRLAM  M GF+ QAIVTG+GP+EN   HL DP  +N   A  T F P
Sbjct:   58 DDPDTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLTALVTQFAP 121          

HSP 2 Score: 29.261 bits (64), Expect = 1.776e-17
Identity = 13/18 (72.22%), Postives = 13/18 (72.22%), Query Frame = 2
Query:    2 YPGGSFDPLGLA**PGGF 55
            YPGG FDPLGLA  P  F
Sbjct:   46 YPGGPFDPLGLADDPDTF 63          
BLAST of BQ623573 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.550e-15
Identity = 35/52 (67.31%), Postives = 44/52 (84.62%), Query Frame = 3
Query:   42 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 197
            D ++  ELK+KEIKNGRLAM ++ G+F+QA+VTG GP +NL DHLADPVNNN
Sbjct:  214 DEKSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNN 265          
BLAST of BQ623573 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.545e-14
Identity = 32/52 (61.54%), Postives = 43/52 (82.69%), Query Frame = 3
Query:   42 DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 197
            D ++  ELK+KE+KNGRLAM ++ G+F+Q +VTG GP +NL DH+ADPVNNN
Sbjct:  216 DEKSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNN 267          
BLAST of BQ623573 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 2.143e-13
Identity = 35/53 (66.04%), Postives = 40/53 (75.47%), Query Frame = 3
Query:   42 DPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 197
            DP  F ELKVKEIKNGRLA+ ++ GF V Q+   G GPLENLA HLADP +NN
Sbjct:  181 DPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLATHLADPWHNN 233          

HSP 2 Score: 27.335 bits (59), Expect = 2.143e-13
Identity = 11/18 (61.11%), Postives = 13/18 (72.22%), Query Frame = 2
Query:    2 YPGGSFDPLGLA**PGGF 55
            YPGG+FDPLG +  P  F
Sbjct:  168 YPGGAFDPLGYSKDPAKF 185          
BLAST of BQ623573 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.143e-13
Identity = 35/53 (66.04%), Postives = 39/53 (73.58%), Query Frame = 3
Query:   42 DPEAFAELKVKEIKNGRLAMFSMFGFFV-QAIVTGKGPLENLADHLADPVNNN 197
            DP  F ELK+KEIKNGRLAM +  GF V Q+   G GPLENLA HLADP +NN
Sbjct:  180 DPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLATHLADPWHNN 232          

HSP 2 Score: 27.7202 bits (60), Expect = 2.143e-13
Identity = 11/18 (61.11%), Postives = 13/18 (72.22%), Query Frame = 2
Query:    2 YPGGSFDPLGLA**PGGF 55
            YPGG+FDPLG +  P  F
Sbjct:  167 YPGGAFDPLGFSKDPAKF 184          
The following BLAST results are available for this feature:
BLAST of BQ623573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
CB2_DUNSA3.785e-2579.37Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_CHLRE4.935e-2579.37Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNTE6.422e-2578.13Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_MALDO7.988e-2178.13Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB26_ARATH1.706e-1775.00Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB21_EUGGR1.776e-1762.50Chlorophyll a-b binding protein of LHCII type 1 (F... [more]
CB13_SOLLC6.550e-1567.31Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA5.545e-1461.54Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB11_SOLLC2.143e-1366.04Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB121_HORVU2.143e-1366.04Chlorophyll a-b binding protein 1B-21, chloroplast... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00664 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00664 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623573 ID=BQ623573; Name=BQ623573; organism=Citrus sinensis; type=EST; length=364bp
GTACCCAGGTGGCAGCTTTGATCCATTGGGTTTGGCGTGATGACCCGGAG
GCTTTTGCTGAGCTCAAGGTTAAGGAAATCAAGAATGGAAGGTTGGCTAT
GTTCTCCATGTTTGGTTTCTTCGTTCAGGCCATTGTCACCGGCAAGGGAC
CGTTAGAGAACTTGGCCGACCACTTGGCCGACCCTGTCAACAACAATGCC
TGGGCCTACGCCACCAACTTTGTCCCCGGAAAGTGAGCTTCGGTTGATAA
CATTAGTAGCGTGGAAATTGGAATTGAGAGTGATTGGTTATTGATGTGAC
TCTATTTCAACTTGCAAAACATGTGAATTATGTAATGTACTGCTACTACC
AGTTTGAGGGGATT
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