BQ623578

Overview
NameBQ623578
Unique NameBQ623578
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length429
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623578 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 6.343e-24
Identity = 50/54 (92.59%), Postives = 53/54 (98.15%), Query Frame = 1
Query:    1 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 162
            KEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL+DH+ADPV NNAWAYATNFVPGK
Sbjct:  184 KEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADPVANNAWAYATNFVPGK 237          
BLAST of BQ623578 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 8.284e-24
Identity = 51/54 (94.44%), Postives = 52/54 (96.30%), Query Frame = 1
Query:    1 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 162
            KEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHLADPV NNAWAYATNFVPGK
Sbjct:   97 KEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 150          
BLAST of BQ623578 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 8.284e-24
Identity = 50/54 (92.59%), Postives = 52/54 (96.30%), Query Frame = 1
Query:    1 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 162
            KE+K GRLAM SMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWAYATNFVPGK
Sbjct:  212 KELKKGRLAMLSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYATNFVPGK 265          
BLAST of BQ623578 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 8.284e-24
Identity = 51/54 (94.44%), Postives = 52/54 (96.30%), Query Frame = 1
Query:    1 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 162
            KEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHLADPV NNAWAYATNFVPGK
Sbjct:  213 KEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 266          
BLAST of BQ623578 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 8.284e-24
Identity = 50/54 (92.59%), Postives = 53/54 (98.15%), Query Frame = 1
Query:    1 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 162
            KEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADH+ADPV NNAWA+ATNFVPGK
Sbjct:  211 KEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADPVANNAWAFATNFVPGK 264          
BLAST of BQ623578 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 108.997 bits (271), Expect = 8.284e-24
Identity = 51/54 (94.44%), Postives = 52/54 (96.30%), Query Frame = 1
Query:    1 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 162
            KEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHLADPV NNAWAYATNFVPGK
Sbjct:  212 KEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWAYATNFVPGK 265          
BLAST of BQ623578 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.846e-23
Identity = 50/54 (92.59%), Postives = 52/54 (96.30%), Query Frame = 1
Query:    1 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 162
            KEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  212 KEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 265          
BLAST of BQ623578 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.846e-23
Identity = 50/54 (92.59%), Postives = 51/54 (94.44%), Query Frame = 1
Query:    1 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 162
            KE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT   PGK
Sbjct:  203 KELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATKLCPGK 256          
BLAST of BQ623578 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.410e-23
Identity = 50/54 (92.59%), Postives = 52/54 (96.30%), Query Frame = 1
Query:    1 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 162
            KEIKNGRLAMFSMFGFFVQAIVTGKGPLE+LADH+ADPVNNNAW  ATNFVPGK
Sbjct:  213 KEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVNNNAWLIATNFVPGK 266          
BLAST of BQ623578 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 3.148e-23
Identity = 49/54 (90.74%), Postives = 52/54 (96.30%), Query Frame = 1
Query:    1 KEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 162
            KEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL+DH+ DPV NNAWAYATNFVPGK
Sbjct:  212 KEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDPVANNAWAYATNFVPGK 265          
The following BLAST results are available for this feature:
BLAST of BQ623578 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
CB25_SOLLC6.343e-2492.59Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB22_PINSY8.284e-2494.44Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB22_MAIZE8.284e-2492.59Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_PINTH8.284e-2494.44Chlorophyll a-b binding protein type I, chloroplas... [more]
CB21_LEMGI8.284e-2492.59Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_GOSHI8.284e-2494.44Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB23_TOBAC1.846e-2392.59Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB22_SOYBN1.846e-2392.59Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_WHEAT2.410e-2392.59Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB24_SOLLC3.148e-2390.74Chlorophyll a-b binding protein 4, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00669 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00669 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623578 ID=BQ623578; Name=BQ623578; organism=Citrus sinensis; type=EST; length=429bp
AAGGAAATCAAGAATGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTCTT
CGTTCAGGCCATTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCCGACC
ACTTGGCCGACCCTGTCAACAACAATGCCTGGGCCTACGCCACCAACTTT
GTCCCCGGAAAGTGAGCTTCGGTTGATAACATTAGTAGCGTGGAAATTGG
AATTGAGAGTGATTGGTTATTGATGTGACTCTATTTCAACTTGCAAAACA
TGTGAATTATGTAATGTACTGCTACTACTAGTTTGAGGGGATTGTATTTT
CATTCAATCTCTTGTCGCACGGTTCTAGTTCTAGTTCCTCCTCCTTACAG
GTTGTGCCAGAATCTAGTTACAAGTTTACATCAACAAAATCTCCAATATG
TTCCCTTTTAAAAAAAAAAAAAAAAAAAA
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