BQ623580

Overview
NameBQ623580
Unique NameBQ623580
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length301
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2384 contig Csv1_Contig2384:538..837. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623580 vs. ExPASy Swiss-Prot
Match: MDHG2_BRANA (Malate dehydrogenase 2, glyoxysomal OS=Brassica napus GN=MDH2 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.116e-17
Identity = 46/89 (51.69%), Postives = 53/89 (59.55%), Query Frame = 2
Query:    2 TYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVETKAGKGSAT 268
            TY+ KKL GVTTLDV RA TF                   HAG+TILPL SQ  P ++    +I+ LT R Q+GGTEVVE KAG GSAT
Sbjct:  182 TYDPKKLLGVTTLDVARANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPPSSFTPSEIEYLTNRIQNGGTEVVEAKAGAGSAT 270          
BLAST of BQ623580 vs. ExPASy Swiss-Prot
Match: MDHG1_BRANA (Malate dehydrogenase 1, glyoxysomal OS=Brassica napus GN=MDH1 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 4.116e-17
Identity = 46/89 (51.69%), Postives = 53/89 (59.55%), Query Frame = 2
Query:    2 TYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVETKAGKGSAT 268
            TY+ KKL GVTTLDV RA TF                   HAG+TILPL SQ  P ++    +I+ LT R Q+GGTEVVE KAG GSAT
Sbjct:  182 TYDPKKLLGVTTLDVARANTFVAEVLGLDPREVDVPVVGGHAGVTILPLLSQVKPPSSFTPSEIEYLTNRIQNGGTEVVEAKAGAGSAT 270          
BLAST of BQ623580 vs. ExPASy Swiss-Prot
Match: MDHG_CUCSA (Malate dehydrogenase, glyoxysomal OS=Cucumis sativus GN=MDHG PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.375e-17
Identity = 46/89 (51.69%), Postives = 53/89 (59.55%), Query Frame = 2
Query:    2 TYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVETKAGKGSAT 268
            TY+ K+L GVT LDVVRA TF                   HAG+TILPL SQ  P ++   E+I  LT R Q+GGTEVVE KAG GSAT
Sbjct:  180 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVNVPVVGGHAGVTILPLLSQVKPPSSFTQEEINYLTDRIQNGGTEVVEAKAGAGSAT 268          
BLAST of BQ623580 vs. ExPASy Swiss-Prot
Match: MDHG_CITLA (Malate dehydrogenase, glyoxysomal OS=Citrullus lanatus PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.375e-17
Identity = 46/89 (51.69%), Postives = 53/89 (59.55%), Query Frame = 2
Query:    2 TYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVETKAGKGSAT 268
            TY+ K+L GVT LDVVRA TF                   HAG+TILPL SQ  P ++   E+I  LT R Q+GGTEVVE KAG GSAT
Sbjct:  180 TYDPKRLLGVTMLDVVRANTFVAEVLGLDPRDVDVPVVGGHAGVTILPLLSQVKPPSSFTQEEISYLTDRIQNGGTEVVEAKAGAGSAT 268          
BLAST of BQ623580 vs. ExPASy Swiss-Prot
Match: MDH_PROMH (Malate dehydrogenase OS=Proteus mirabilis (strain HI4320) GN=mdh PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 7.020e-17
Identity = 46/98 (46.94%), Postives = 58/98 (59.18%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVETKAGKGSATFVNGLCRSHF 298
            Y++K+LFGVTTLD++RA TF                   H+G+TILPL SQ     +  DE++ ALTKR Q+ GTEVVE KAG GSAT   G   + F
Sbjct:  138 YDKKRLFGVTTLDIIRANTFVAELKGKDPQTTNVPVIGGHSGVTILPLLSQVAG-VSFTDEEVAALTKRIQNAGTEVVEAKAGGGSATLSMGQAAARF 234          
BLAST of BQ623580 vs. ExPASy Swiss-Prot
Match: MDH_VIBMI (Malate dehydrogenase (Fragment) OS=Vibrio mimicus GN=mdh PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.169e-17
Identity = 46/92 (50.00%), Postives = 57/92 (61.96%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVETKAGKGSATFVNG 280
            Y+++KLFGVTTLDV+R++TF                   H+G+TILPL SQ        DE++ ALTKR Q+ GTEVVE KAG GSATF  G
Sbjct:  131 YDKRKLFGVTTLDVIRSETFVAALKDKDPGQVRVPVIGGHSGVTILPLLSQVEG-VTFTDEEVAALTKRIQNAGTEVVEAKAGGGSATFSMG 221          
BLAST of BQ623580 vs. ExPASy Swiss-Prot
Match: MDH_PSEA6 (Malate dehydrogenase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=mdh PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.169e-17
Identity = 47/99 (47.47%), Postives = 56/99 (56.57%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVETKAGKGSATFVNGLCRSHFC 301
            YN+ KLFGVTTLDV+RA+TF                   H+G TILPL SQ        DE++ +LT R Q+ GTEVVE KAG GSAT   G   + FC
Sbjct:  138 YNKNKLFGVTTLDVIRAETFVGNLRDLNPANVHVPVIGGHSGTTILPLLSQVEG-VEFTDEEVASLTTRIQNAGTEVVEAKAGGGSATLSMGQAAARFC 235          
BLAST of BQ623580 vs. ExPASy Swiss-Prot
Match: MDHM_CAEEL (Probable malate dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=mdh-1 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.169e-17
Identity = 45/98 (45.92%), Postives = 55/98 (56.12%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVETKAGKGSATFVNGLCRSHF 298
            Y+ K++FGVTTLDVVR++ F                   HAGITI+PL SQ  P    ++E+I  LT R QD GTEVV  KAG GSAT    L  + F
Sbjct:  165 YDPKRVFGVTTLDVVRSQAFVSELKGHDASKTVVPVVGGHAGITIIPLLSQVKPSTKFSEEEISKLTPRIQDAGTEVVNAKAGAGSATLSMALAGARF 262          
BLAST of BQ623580 vs. ExPASy Swiss-Prot
Match: MDH_SHEAM (Malate dehydrogenase OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=mdh PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.197e-16
Identity = 47/98 (47.96%), Postives = 58/98 (59.18%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVETKAGKGSATFVNGLCRSHF 298
            Y++ +LFGVTTLDV+RA+TF                   H+G+TILPL SQ     N +DE++ ALTKR Q+ GTEVVE KAG GSAT   G     F
Sbjct:  138 YDKNRLFGVTTLDVIRAETFVAEAKGVDVASVKVNVIGGHSGVTILPLLSQIEG-VNFSDEEVAALTKRIQNAGTEVVEAKAGGGSATLSMGQAAFRF 234          
BLAST of BQ623580 vs. ExPASy Swiss-Prot
Match: MDHM_PONAB (Malate dehydrogenase, mitochondrial OS=Pongo abelii GN=MDH2 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.197e-16
Identity = 44/88 (50.00%), Postives = 52/88 (59.09%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVETKAGKGSAT 268
            YN  K+FGVTTLD+VRA TF                   HAG TI+PL SQ TPK +   + + ALT R Q+ GTEVV+ KAG GSAT
Sbjct:  161 YNPNKIFGVTTLDIVRANTFVAELKGLDPARVNVPVIGGHAGKTIIPLISQCTPKVDFPQDQLTALTGRIQEAGTEVVKAKAGAGSAT 248          
The following BLAST results are available for this feature:
BLAST of BQ623580 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 151
Match NameE-valueIdentityDescription
MDHG2_BRANA4.116e-1751.69Malate dehydrogenase 2, glyoxysomal OS=Brassica na... [more]
MDHG1_BRANA4.116e-1751.69Malate dehydrogenase 1, glyoxysomal OS=Brassica na... [more]
MDHG_CUCSA5.375e-1751.69Malate dehydrogenase, glyoxysomal OS=Cucumis sativ... [more]
MDHG_CITLA5.375e-1751.69Malate dehydrogenase, glyoxysomal OS=Citrullus lan... [more]
MDH_PROMH7.020e-1746.94Malate dehydrogenase OS=Proteus mirabilis (strain ... [more]
MDH_VIBMI9.169e-1750.00Malate dehydrogenase (Fragment) OS=Vibrio mimicus ... [more]
MDH_PSEA69.169e-1747.47Malate dehydrogenase OS=Pseudoalteromonas atlantic... [more]
MDHM_CAEEL9.169e-1745.92Probable malate dehydrogenase, mitochondrial OS=Ca... [more]
MDH_SHEAM1.197e-1647.96Malate dehydrogenase OS=Shewanella amazonensis (st... [more]
MDHM_PONAB1.197e-1650.00Malate dehydrogenase, mitochondrial OS=Pongo abeli... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00671 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00671 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623580 ID=BQ623580; Name=BQ623580; organism=Citrus sinensis; type=EST; length=301bp
GACATACAATGAGAAGAAGCTGTTTGGTGTGACCACTCTTGATGTGGTTA
GGGCTAAGACTTTCTATGCTGGAAAGGCCAATGTTAATGTTGCAGAGGTT
AATGTGCCTGTTGTTGGTGGTCATGCTGGTATAACAATTCTCCCGCTATT
TTCTCAGGCCACACCAAAGGCCAATTTGGCAGATGAAGATATTAAGGCTC
TTACAAAGAGAACCCAAGATGGTGGGACAGAAGTTGTGGAAACAAAGGCT
GGAAAGGGTTCTGCAACATTTGTCAATGGCTTATGCAGGAGCCATTTTTG
C
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