BQ623580

Overview
NameBQ623580
Unique NameBQ623580
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length301
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2384 contig Csv1_Contig2384:538..837. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623580 vs. ExPASy Swiss-Prot
Match: MDH_COLP3 (Malate dehydrogenase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=mdh PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.484e-16
Identity = 46/100 (46.00%), Postives = 57/100 (57.00%), Query Frame = 2
Query:    2 TYNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVETKAGKGSATFVNGLCRSHFC 301
            TY+  +LFGVTTLDV+R++ F                   H+G TILPL SQ    A  +DE++ ALT R Q+ GTEVVE KAG GSAT   G   + FC
Sbjct:  137 TYDAARLFGVTTLDVIRSEAFVAELKGLDVATVKVPVIGGHSGTTILPLLSQVEG-ATFSDEEVAALTPRIQNAGTEVVEAKAGGGSATLSMGAAAARFC 235          
BLAST of BQ623580 vs. ExPASy Swiss-Prot
Match: MDHM_RAT (Malate dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Mdh2 PE=1 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 3.484e-16
Identity = 43/88 (48.86%), Postives = 51/88 (57.95%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVETKAGKGSAT 268
            YN  K+FGVTTLD+VRA TF                   HAG TI+PL SQ TPK +   + +  LT R Q+ GTEVV+ KAG GSAT
Sbjct:  161 YNPNKIFGVTTLDIVRANTFVAELKGLDPARVNVPVIGGHAGKTIIPLISQCTPKVDFPQDQLATLTGRIQEAGTEVVKAKAGAGSAT 248          
BLAST of BQ623580 vs. ExPASy Swiss-Prot
Match: MDHM_MOUSE (Malate dehydrogenase, mitochondrial OS=Mus musculus GN=Mdh2 PE=1 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 3.484e-16
Identity = 43/88 (48.86%), Postives = 51/88 (57.95%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVETKAGKGSAT 268
            YN  K+FGVTTLD+VRA TF                   HAG TI+PL SQ TPK +   + +  LT R Q+ GTEVV+ KAG GSAT
Sbjct:  161 YNPNKIFGVTTLDIVRANTFVAELKGLDPARVNVPVIGGHAGKTIIPLISQCTPKVDFPQDQLATLTGRIQEAGTEVVKAKAGAGSAT 248          
BLAST of BQ623580 vs. ExPASy Swiss-Prot
Match: MDH_KLEVA (Malate dehydrogenase (Fragment) OS=Klebsiella variicola GN=mdh PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.550e-16
Identity = 44/98 (44.90%), Postives = 58/98 (59.18%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVETKAGKGSATFVNGLCRSHF 298
            Y++ KLFGVTTLD++R+ TF                   H+G+TILPL SQ  P  + +D+++  LTKR Q+ GTEVVE KAG GSAT   G   + F
Sbjct:  108 YDKNKLFGVTTLDIIRSNTFVAELKGKSATEVEVPVIGGHSGVTILPLLSQI-PGVSFSDQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARF 204          
BLAST of BQ623580 vs. ExPASy Swiss-Prot
Match: MDH_KLEP3 (Malate dehydrogenase OS=Klebsiella pneumoniae (strain 342) GN=mdh PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.550e-16
Identity = 44/98 (44.90%), Postives = 58/98 (59.18%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVETKAGKGSATFVNGLCRSHF 298
            Y++ KLFGVTTLD++R+ TF                   H+G+TILPL SQ  P  + +D+++  LTKR Q+ GTEVVE KAG GSAT   G   + F
Sbjct:  138 YDKNKLFGVTTLDIIRSNTFVAELKGKSATEVEVPVIGGHSGVTILPLLSQI-PGVSFSDQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARF 234          
BLAST of BQ623580 vs. ExPASy Swiss-Prot
Match: MDH_PHOLL (Malate dehydrogenase OS=Photorhabdus luminescens subsp. laumondii GN=mdh PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.943e-16
Identity = 45/92 (48.91%), Postives = 55/92 (59.78%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVETKAGKGSATFVNG 280
            Y++ +LFGVTTLDV+R+ TF                   H+G+TILPL SQ  P  N  D ++ ALTKR Q+ GTEVVE KAG GSAT   G
Sbjct:  138 YDKNRLFGVTTLDVIRSNTFVAELKGKKPQEIEVPVIGGHSGVTILPLLSQI-PGVNFTDGELAALTKRIQNAGTEVVEAKAGGGSATLSMG 228          
BLAST of BQ623580 vs. ExPASy Swiss-Prot
Match: MDH_SHEDO (Malate dehydrogenase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=mdh PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.762e-16
Identity = 45/98 (45.92%), Postives = 57/98 (58.16%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVETKAGKGSATFVNGLCRSHF 298
            Y++ +LFGVTTLDV+R++TF                   H+G+TILPL SQ     +  DE++ ALTKR Q+ GTEVVE KAG GSAT   G     F
Sbjct:  138 YDKNRLFGVTTLDVIRSETFIAELKGLNVADVNINVIGGHSGVTILPLLSQVKG-VSFTDEEVAALTKRIQNAGTEVVEAKAGGGSATLSMGQAACRF 234          
BLAST of BQ623580 vs. ExPASy Swiss-Prot
Match: MDH_PHOPR (Malate dehydrogenase OS=Photobacterium profundum GN=mdh PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 7.762e-16
Identity = 44/98 (44.90%), Postives = 58/98 (59.18%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVETKAGKGSATFVNGLCRSHF 298
            Y++++LFG+TTLD++R++TF                   H+G+TILPL SQ       +DE+IKALT R Q+ GTEVVE KAG GSAT   G     F
Sbjct:  138 YDKRRLFGITTLDIIRSETFVAELKGKTPSDIQVPVIGGHSGVTILPLLSQVEG-VEFSDEEIKALTPRIQNAGTEVVEAKAGGGSATLSMGQAAYRF 234          
BLAST of BQ623580 vs. ExPASy Swiss-Prot
Match: MDH_AERS4 (Malate dehydrogenase OS=Aeromonas salmonicida (strain A449) GN=mdh PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.014e-15
Identity = 45/98 (45.92%), Postives = 59/98 (60.20%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVETKAGKGSATFVNGLCRSHF 298
            Y++++LFGVTTLDV+RA+TF                   H+G+TILPL SQ    A+ + E++ A+TKR Q+ GTEVVE KAG GSAT   G     F
Sbjct:  138 YDKRRLFGVTTLDVIRAETFVADAKGLNVDKVRVNVIGGHSGVTILPLLSQIEG-ASFSAEEVAAMTKRIQNAGTEVVEAKAGGGSATLSMGQAACRF 234          
BLAST of BQ623580 vs. ExPASy Swiss-Prot
Match: MDH_AERHH (Malate dehydrogenase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=mdh PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.014e-15
Identity = 46/98 (46.94%), Postives = 58/98 (59.18%), Query Frame = 2
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVETKAGKGSATFVNGLCRSHF 298
            Y++++LFGVTTLDV+RA+TF                   H+G+TILPL SQ    +  ADE + A+TKR Q+ GTEVVE KAG GSAT   G     F
Sbjct:  138 YDKRRLFGVTTLDVIRAETFVAEAKGLNVDKVRVNVIGGHSGVTILPLLSQIEGASFTADE-VAAMTKRIQNAGTEVVEAKAGGGSATLSMGQAACRF 234          
The following BLAST results are available for this feature:
BLAST of BQ623580 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 151
Match NameE-valueIdentityDescription
MDH_COLP33.484e-1646.00Malate dehydrogenase OS=Colwellia psychrerythraea ... [more]
MDHM_RAT3.484e-1648.86Malate dehydrogenase, mitochondrial OS=Rattus norv... [more]
MDHM_MOUSE3.484e-1648.86Malate dehydrogenase, mitochondrial OS=Mus musculu... [more]
MDH_KLEVA4.550e-1644.90Malate dehydrogenase (Fragment) OS=Klebsiella vari... [more]
MDH_KLEP34.550e-1644.90Malate dehydrogenase OS=Klebsiella pneumoniae (str... [more]
MDH_PHOLL5.943e-1648.91Malate dehydrogenase OS=Photorhabdus luminescens s... [more]
MDH_SHEDO7.762e-1645.92Malate dehydrogenase OS=Shewanella denitrificans (... [more]
MDH_PHOPR7.762e-1644.90Malate dehydrogenase OS=Photobacterium profundum G... [more]
MDH_AERS41.014e-1545.92Malate dehydrogenase OS=Aeromonas salmonicida (str... [more]
MDH_AERHH1.014e-1546.94Malate dehydrogenase OS=Aeromonas hydrophila subsp... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00671 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00671 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623580 ID=BQ623580; Name=BQ623580; organism=Citrus sinensis; type=EST; length=301bp
GACATACAATGAGAAGAAGCTGTTTGGTGTGACCACTCTTGATGTGGTTA
GGGCTAAGACTTTCTATGCTGGAAAGGCCAATGTTAATGTTGCAGAGGTT
AATGTGCCTGTTGTTGGTGGTCATGCTGGTATAACAATTCTCCCGCTATT
TTCTCAGGCCACACCAAAGGCCAATTTGGCAGATGAAGATATTAAGGCTC
TTACAAAGAGAACCCAAGATGGTGGGACAGAAGTTGTGGAAACAAAGGCT
GGAAAGGGTTCTGCAACATTTGTCAATGGCTTATGCAGGAGCCATTTTTG
C
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