BQ623580

Overview
NameBQ623580
Unique NameBQ623580
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length301
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2384 contig Csv1_Contig2384:538..837. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of BQ623580 vs. ExPASy Swiss-Prot
Match: MDH_ECOUT (Malate dehydrogenase OS=Escherichia coli (strain UTI89 / UPEC) GN=mdh PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.324e-15
Identity = 43/98 (43.88%), Postives = 57/98 (58.16%), Query Frame = 2 
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVETKAGKGSATFVNGLCRSHF 298
            Y++ KLFGVTTLD++R+ TF                   H+G+TILPL SQ  P  +  ++++  LTKR Q+ GTEVVE KAG GSAT   G   + F
Sbjct:  138 YDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARF 234
[Close]
BLAST of BQ623580 vs. ExPASy Swiss-Prot
Match: MDH_ECOSM (Malate dehydrogenase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=mdh PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.324e-15
Identity = 43/98 (43.88%), Postives = 57/98 (58.16%), Query Frame = 2 
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVETKAGKGSATFVNGLCRSHF 298
            Y++ KLFGVTTLD++R+ TF                   H+G+TILPL SQ  P  +  ++++  LTKR Q+ GTEVVE KAG GSAT   G   + F
Sbjct:  138 YDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARF 234
[Close]
BLAST of BQ623580 vs. ExPASy Swiss-Prot
Match: MDH_ECOSE (Malate dehydrogenase OS=Escherichia coli (strain SE11) GN=mdh PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.324e-15
Identity = 43/98 (43.88%), Postives = 57/98 (58.16%), Query Frame = 2 
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVETKAGKGSATFVNGLCRSHF 298
            Y++ KLFGVTTLD++R+ TF                   H+G+TILPL SQ  P  +  ++++  LTKR Q+ GTEVVE KAG GSAT   G   + F
Sbjct:  138 YDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARF 234
[Close]
BLAST of BQ623580 vs. ExPASy Swiss-Prot
Match: MDH_ECOLU (Malate dehydrogenase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=mdh PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.324e-15
Identity = 43/98 (43.88%), Postives = 57/98 (58.16%), Query Frame = 2 
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVETKAGKGSATFVNGLCRSHF 298
            Y++ KLFGVTTLD++R+ TF                   H+G+TILPL SQ  P  +  ++++  LTKR Q+ GTEVVE KAG GSAT   G   + F
Sbjct:  138 YDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARF 234
[Close]
BLAST of BQ623580 vs. ExPASy Swiss-Prot
Match: MDH_ECOLI (Malate dehydrogenase OS=Escherichia coli (strain K12) GN=mdh PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.324e-15
Identity = 43/98 (43.88%), Postives = 57/98 (58.16%), Query Frame = 2 
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVETKAGKGSATFVNGLCRSHF 298
            Y++ KLFGVTTLD++R+ TF                   H+G+TILPL SQ  P  +  ++++  LTKR Q+ GTEVVE KAG GSAT   G   + F
Sbjct:  138 YDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARF 234
[Close]
BLAST of BQ623580 vs. ExPASy Swiss-Prot
Match: MDH_ECOLC (Malate dehydrogenase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=mdh PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.324e-15
Identity = 43/98 (43.88%), Postives = 57/98 (58.16%), Query Frame = 2 
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVETKAGKGSATFVNGLCRSHF 298
            Y++ KLFGVTTLD++R+ TF                   H+G+TILPL SQ  P  +  ++++  LTKR Q+ GTEVVE KAG GSAT   G   + F
Sbjct:  138 YDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARF 234
[Close]
BLAST of BQ623580 vs. ExPASy Swiss-Prot
Match: MDH_ECOL6 (Malate dehydrogenase OS=Escherichia coli O6 GN=mdh PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.324e-15
Identity = 43/98 (43.88%), Postives = 57/98 (58.16%), Query Frame = 2 
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVETKAGKGSATFVNGLCRSHF 298
            Y++ KLFGVTTLD++R+ TF                   H+G+TILPL SQ  P  +  ++++  LTKR Q+ GTEVVE KAG GSAT   G   + F
Sbjct:  138 YDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARF 234
[Close]
BLAST of BQ623580 vs. ExPASy Swiss-Prot
Match: MDH_ECOL5 (Malate dehydrogenase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=mdh PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.324e-15
Identity = 43/98 (43.88%), Postives = 57/98 (58.16%), Query Frame = 2 
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVETKAGKGSATFVNGLCRSHF 298
            Y++ KLFGVTTLD++R+ TF                   H+G+TILPL SQ  P  +  ++++  LTKR Q+ GTEVVE KAG GSAT   G   + F
Sbjct:  138 YDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARF 234
[Close]
BLAST of BQ623580 vs. ExPASy Swiss-Prot
Match: MDH_ECOK1 (Malate dehydrogenase OS=Escherichia coli O1:K1 / APEC GN=mdh PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.324e-15
Identity = 43/98 (43.88%), Postives = 57/98 (58.16%), Query Frame = 2 
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVETKAGKGSATFVNGLCRSHF 298
            Y++ KLFGVTTLD++R+ TF                   H+G+TILPL SQ  P  +  ++++  LTKR Q+ GTEVVE KAG GSAT   G   + F
Sbjct:  138 YDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARF 234
[Close]
BLAST of BQ623580 vs. ExPASy Swiss-Prot
Match: MDH_ECOHS (Malate dehydrogenase OS=Escherichia coli O9:H4 (strain HS) GN=mdh PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.324e-15
Identity = 43/98 (43.88%), Postives = 57/98 (58.16%), Query Frame = 2 
Query:    5 YNEKKLFGVTTLDVVRAKTFYXXXXXXXXXXXXXXXXXXHAGITILPLFSQATPKANLADEDIKALTKRTQDGGTEVVETKAGKGSATFVNGLCRSHF 298
            Y++ KLFGVTTLD++R+ TF                   H+G+TILPL SQ  P  +  ++++  LTKR Q+ GTEVVE KAG GSAT   G   + F
Sbjct:  138 YDKNKLFGVTTLDIIRSNTFVAELKGKQPGEVEVPVIGGHSGVTILPLLSQV-PGVSFTEQEVADLTKRIQNAGTEVVEAKAGGGSATLSMGQAAARF 234
The following BLAST results are available for this feature:
BLAST of BQ623580 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 151
Match NameE-valueIdentityDescription
MDH_ECOUT1.324e-1543.88Malate dehydrogenase OS=Escherichia coli (strain U... [more]
MDH_ECOSM1.324e-1543.88Malate dehydrogenase OS=Escherichia coli (strain S... [more]
MDH_ECOSE1.324e-1543.88Malate dehydrogenase OS=Escherichia coli (strain S... [more]
MDH_ECOLU1.324e-1543.88Malate dehydrogenase OS=Escherichia coli O17:K52:H... [more]
MDH_ECOLI1.324e-1543.88Malate dehydrogenase OS=Escherichia coli (strain K... [more]
MDH_ECOLC1.324e-1543.88Malate dehydrogenase OS=Escherichia coli (strain A... [more]
MDH_ECOL61.324e-1543.88Malate dehydrogenase OS=Escherichia coli O6 GN=mdh... [more]
MDH_ECOL51.324e-1543.88Malate dehydrogenase OS=Escherichia coli O6:K15:H3... [more]
MDH_ECOK11.324e-1543.88Malate dehydrogenase OS=Escherichia coli O1:K1 / A... [more]
MDH_ECOHS1.324e-1543.88Malate dehydrogenase OS=Escherichia coli O9:H4 (st... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00671 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00671 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623580 ID=BQ623580; Name=BQ623580; organism=Citrus sinensis; type=EST; length=301bp
GACATACAATGAGAAGAAGCTGTTTGGTGTGACCACTCTTGATGTGGTTA
GGGCTAAGACTTTCTATGCTGGAAAGGCCAATGTTAATGTTGCAGAGGTT
AATGTGCCTGTTGTTGGTGGTCATGCTGGTATAACAATTCTCCCGCTATT
TTCTCAGGCCACACCAAAGGCCAATTTGGCAGATGAAGATATTAAGGCTC
TTACAAAGAGAACCCAAGATGGTGGGACAGAAGTTGTGGAAACAAAGGCT
GGAAAGGGTTCTGCAACATTTGTCAATGGCTTATGCAGGAGCCATTTTTG
C
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