BQ623581

Overview
NameBQ623581
Unique NameBQ623581
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length527
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623581 vs. ExPASy Swiss-Prot
Match: U497H_ARATH (UPF0497 membrane protein At3g14380 OS=Arabidopsis thaliana GN=At3g14380 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 5.747e-25
Identity = 59/122 (48.36%), Postives = 80/122 (65.57%), Query Frame = 2
Query:  164 NAALRTAEPIARXXXXXXXXXXXXXXXKNSETSDFGSLSYSDLGAFRYLVHANGICAGYSLLSAI-IAAMPRPSTMSQAWTFFFLDQLLTYLILAAGAVSTEVLYLERKGDLAITWSAVCGS 526
            N   ++AE + R               KNS +++FGS+SYS++GAF YLV ANG+CA YSLLSA+ I A+P P +  Q  T F LDQ++TY++LAAGAVS E +YL   G++ ITWS+ C S
Sbjct:   17 NRTEKSAEAVLRVASMALSITGLVIMIKNSISNEFGSVSYSNIGAFMYLVSANGVCAAYSLLSALAILALPCPISKVQVRTLFLLDQVVTYVVLAAGAVSAETVYLAYYGNIPITWSSACDS 138          
BLAST of BQ623581 vs. ExPASy Swiss-Prot
Match: U4972_PICSI (UPF0497 membrane protein 2 OS=Picea sitchensis PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.952e-21
Identity = 47/94 (50.00%), Postives = 66/94 (70.21%), Query Frame = 2
Query:  245 KNSETSDFGSLSYSDLGAFRYLVHANGICAGYSLLSAIIAAMPRPSTMSQAWTFFFLDQLLTYLILAAGAVSTEVLYLERKGDLAITWSAVCGS 526
            K+ ++  +  L YS++ AFR L +ANGICAGYSL+SA  + +P    +S++W  F LDQ +TYL+LA GAV+T+VLY+  KGD   TW  +CGS
Sbjct:   48 KSEQSDQYMQLDYSNVDAFRCLAYANGICAGYSLISAFDSMVPVSHHISRSWILFLLDQGITYLMLAGGAVATQVLYVAYKGDEKATWEQICGS 141          
BLAST of BQ623581 vs. ExPASy Swiss-Prot
Match: U4974_PICSI (UPF0497 membrane protein 4 OS=Picea sitchensis PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 2.339e-18
Identity = 44/96 (45.83%), Postives = 65/96 (67.71%), Query Frame = 2
Query:  245 KNSETSDFGSLSYSDLGAFRYLVHANGICAGYSLLSAI--IAAMPRPSTMSQAWTFFFLDQLLTYLILAAGAVSTEVLYLERKGDLAITWSAVCGS 526
            KN +++ +G+L YSD+G F+YLV+ANGICA YS+LS +  + +     + ++AW  F LDQ LTYLIL AG    E++ L  +G+  ++WS VC S
Sbjct:   37 KNKQSNQYGALHYSDVGGFKYLVYANGICAIYSILSLLGSVLSTGIDYSWTRAWIMFILDQALTYLILTAGVCGVEIMDLAYQGNEQVSWSRVCVS 132          
BLAST of BQ623581 vs. ExPASy Swiss-Prot
Match: U497G_VITVI (UPF0497 membrane protein 16 OS=Vitis vinifera GN=GSVIVT00027310001 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 4.564e-14
Identity = 37/91 (40.66%), Postives = 60/91 (65.93%), Query Frame = 2
Query:  254 ETSDFGSLSYSDLGAFRYLVHANGICAGYSLLSAIIAAMPRPSTMSQAWTFFFLDQLLTYLILAAGAVSTEVLYLERKGDLAITWSAVCGS 526
            + S +G L +S+L   +Y+V  +GI AGY+L+ A++A+  R   +++AW FF  DQ++ YL++ +GA   E+LYL  KGD  ++WS  C S
Sbjct:   46 DNSIYGKLEFSNLTGLKYMVCISGISAGYALV-AVVASWVR-CLVNKAWLFFVSDQIMAYLMVTSGAAVLEILYLAYKGDRGVSWSEACSS 134          
BLAST of BQ623581 vs. ExPASy Swiss-Prot
Match: U49C7_ARATH (UPF0497 membrane protein At5g54980 OS=Arabidopsis thaliana GN=At5g54980 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 3.271e-12
Identity = 34/88 (38.64%), Postives = 56/88 (63.64%), Query Frame = 2
Query:  263 DFGSLSYSDLGAFRYLVHANGICAGYSLLSAIIAAMPRPSTMSQAWTFFFLDQLLTYLILAAGAVSTEVLYLERKGDLAITWSAVCGS 526
            D+G+L Y+ +   +Y+V  + I A Y+LLS + + +     +S+AW FF  DQ+L Y++  + A +TE++YL  KGD  +TWS +C S
Sbjct:   60 DYGNLEYNSIMGLKYMVGVSAISAIYALLSTVSSWVT--CLVSKAWLFFIPDQVLAYVMTTSVAGATEIVYLLNKGDKIVTWSEMCSS 145          
BLAST of BQ623581 vs. ExPASy Swiss-Prot
Match: U497B_ORYSJ (UPF0497 membrane protein Os02g02199000 OS=Oryza sativa subsp. japonica GN=Os02g0219900 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.287e-12
Identity = 33/85 (38.82%), Postives = 50/85 (58.82%), Query Frame = 2
Query:  266 FGSLSYSDLGAFRYLVHANGICAGYSLLSAIIAAMPRPSTMSQAWTFFFLDQLLTYLILAAGAVSTEVLYLERKGDLAITWSAVC 520
            +G + +SDL  FRYLV  N I A YS+ S ++++    +     W  F LDQ   YL+L + + + EV+YL R+GD  ++W  VC
Sbjct:   57 YGEVRFSDLSGFRYLVWINAITAAYSVASILLSSCRFITRFD--WLIFLLDQASAYLLLTSASAAAEVVYLAREGDREVSWGEVC 139          
BLAST of BQ623581 vs. ExPASy Swiss-Prot
Match: U497A_RICCO (UPF0497 membrane protein 10 OS=Ricinus communis GN=RCOM_1302390 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 9.517e-12
Identity = 30/93 (32.26%), Postives = 56/93 (60.22%), Query Frame = 2
Query:  248 NSETSDFGSLSYSDLGAFRYLVHANGICAGYSLLSAIIAAMPRPSTMSQAWTFFFLDQLLTYLILAAGAVSTEVLYLERKGDLAITWSAVCGS 526
            + + S +G+L YS++   +Y+V  + ICA Y+ ++A+   +     +++ W FF  DQ++ YL++ + A + E+LY+   GD  +TWS  C S
Sbjct:   31 HQDNSSYGNLKYSNIMGLKYMVCISAICASYAFVAAVSIWIK--CLVNKVWLFFVSDQIIAYLMVTSVAAAMEILYIAYNGDQKVTWSEACTS 121          
BLAST of BQ623581 vs. ExPASy Swiss-Prot
Match: U497D_MAIZE (UPF0497 membrane protein 13 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.243e-11
Identity = 34/121 (28.10%), Postives = 55/121 (45.45%), Query Frame = 2
Query:  161 GNAALRTAEPIARXXXXXXXXXXXXXXXKNSETSD-FGSLSYSDLGAFRYLVHANGICAGYSLLSAIIAAMPRPSTMSQAWTFFFLDQLLTYLILAAGAVSTEVLYLERKGDLAITWSAVC 520
            G A L+  E   R                N++  D +G + +SDL  F YLV  N + A Y++ S + ++  RP      W    +DQ   YL++ + + + E+L L R GD  ++W   C
Sbjct:    2 GAAGLKVPEMALRLCVVPLSLASLWEMASNAQADDTYGEVKFSDLSGFSYLVGVNAVTAAYAVASVLASSFKRPLAARYDWVVLVMDQASAYLLVTSASAAAELLQLARHGDRGVSWGEAC 122          
The following BLAST results are available for this feature:
BLAST of BQ623581 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
U497H_ARATH5.747e-2548.36UPF0497 membrane protein At3g14380 OS=Arabidopsis ... [more]
U4972_PICSI2.952e-2150.00UPF0497 membrane protein 2 OS=Picea sitchensis PE=... [more]
U4974_PICSI2.339e-1845.83UPF0497 membrane protein 4 OS=Picea sitchensis PE=... [more]
U497G_VITVI4.564e-1440.66UPF0497 membrane protein 16 OS=Vitis vinifera GN=G... [more]
U49C7_ARATH3.271e-1238.64UPF0497 membrane protein At5g54980 OS=Arabidopsis ... [more]
U497B_ORYSJ7.287e-1238.82UPF0497 membrane protein Os02g02199000 OS=Oryza sa... [more]
U497A_RICCO9.517e-1232.26UPF0497 membrane protein 10 OS=Ricinus communis GN... [more]
U497D_MAIZE1.243e-1128.10UPF0497 membrane protein 13 OS=Zea mays PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00672 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00672 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623581 ID=BQ623581; Name=BQ623581; organism=Citrus sinensis; type=EST; length=527bp
CAATTGGCTGAGCTAGCTCGATTGAGACAACAATAACAACAACAACAAAC
AGCAGTAGTTGGTGCACATGGAGAAGAGTAATAATATTGGTGGTGCAGTT
GCTGCAAGCTCTCCTCTGCCAATGATGGGATCGAGGGCTCATCAAGAGAT
CAATGAGGATGGCAACGCTGCCTTGCGCACAGCTGAGCCCATTGCACGTT
TGGTGCCAATGGCTCTCTGTGTTGCTGCACTTGTGCTCATGCTTAAGAAC
TCTGAGACTAGTGACTTTGGCTCTCTTTCTTACTCCGACCTTGGAGCCTT
CAGGTATTTAGTGCATGCCAATGGCATTTGTGCAGGCTATTCGCTTCTTT
CAGCAATTATTGCAGCCATGCCTCGTCCCTCCACCATGTCTCAAGCCTGG
ACTTTCTTTTTCCTTGATCAGTTGCTCACTTACTTGATTCTGGCGGCTGG
AGCCGTGTCGACGGAGGTGCTGTACCTGGAACGCAAGGGAGATTTAGCCA
TCACTTGGAGCGCAGTCTGTGGTTCAT
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