BQ623590

Overview
NameBQ623590
Unique NameBQ623590
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length637
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10901 contig Csv1_Contig10901:708..1345. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623590 vs. ExPASy Swiss-Prot
Match: G3P_COLGL (Glyceraldehyde-3-phosphate dehydrogenase OS=Colletotrichum gloeosporioides GN=GPDA PE=2 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 8.879e-30
Identity = 73/190 (38.42%), Postives = 99/190 (52.11%), Query Frame = 2
Query:    2 EGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVD 568
            E TGVF   + A  H+Q GAKKV+I+AP   D P YV+ VN  +Y     +ISNASCTTNCLAP  KV++ KFGI++G MTT HSYT  Q                   NI+P+ST                   +++RVPT N           K    +E+  A +E+A+  LKG+L+  ++ +VS D
Sbjct:   97 ESTGVFTTTDKAKAHLQGGAKKVIISAPS-ADAPMYVMVVNEKSYDGSADVISNASCTTNCLAPLAKVINDKFGIVEGLMTTVHSYTATQKTVHGPSAKDWRGGRTAAQNIIPSSTGAAKAVGKVIPELNGKLTDMSMRVPTTNVSVVDLTARIEKGASYDEIKQAIKEAAEGPLKGVLAYTEDDVVSTD 285          
BLAST of BQ623590 vs. ExPASy Swiss-Prot
Match: G3P_BOVIN (Glyceraldehyde-3-phosphate dehydrogenase OS=Bos taurus GN=GAPDH PE=1 SV=4)

HSP 1 Score: 130.183 bits (326), Expect = 8.879e-30
Identity = 74/198 (37.37%), Postives = 99/198 (50.00%), Query Frame = 2
Query:    2 EGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSS 592
            E TGVF   E AG H++ GAK+V+I+AP   D P +V+GVN + Y     I+SNASCTTNCLAP  KV+   FGI++G MTT H+ T  Q                   NI+P ST                  G+A RVPTPN           K    +E+    +++++  LKGIL   ++ +VS DF     SS
Sbjct:   95 ESTGVFTTMEKAGAHLKGGAKRVIISAPS-ADAPMFVMGVNHEKYNNTLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKPAKYDEIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSS 291          
BLAST of BQ623590 vs. ExPASy Swiss-Prot
Match: G3P_BORBU (Glyceraldehyde-3-phosphate dehydrogenase OS=Borrelia burgdorferi GN=gap PE=1 SV=3)

HSP 1 Score: 130.183 bits (326), Expect = 8.879e-30
Identity = 80/204 (39.22%), Postives = 105/204 (51.47%), Query Frame = 2
Query:    2 EGTGVFV----DREGAGKHIQ-AGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFA-EEVNAAFRESADN-ELKGILSVCDEPLVSVDFRCSDVSS 592
            E TGVF     D+ G   H+  AGAKKV++T P K +I T V+GVN      D   +SNASCTTNCLAP  KVL + FGI +G MTT H+YT DQ                  +I+PTST                 NG ++RVP P            KK    EE+N+  R++++  ELKGIL   ++P+VS D + +  SS
Sbjct:   92 ESTGVFSSATSDKGGYLDHVNHAGAKKVILTVPAKDEIKTIVLGVNDHDINSDLKAVSNASCTTNCLAPLAKVLHESFGIEQGLMTTVHAYTNDQRILDLPHSDLRRARAAALSIIPTSTGAAKAVGLVLPELKGKLNGTSMRVPVPTGSIVDLTVQLKKKDVTKEEINSVLRKASETPELKGILGYTEDPIVSSDIKGNSHSS 295          
BLAST of BQ623590 vs. ExPASy Swiss-Prot
Match: G3P_PHACH (Glyceraldehyde-3-phosphate dehydrogenase OS=Phanerochaete chrysosporium GN=GPD PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.160e-29
Identity = 76/198 (38.38%), Postives = 100/198 (50.51%), Query Frame = 2
Query:    2 EGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSS 592
            E TGVF   E A  H++   KKV+I+AP   D P +V GVN DAY     +ISNASCTTNCLAP  KV+  KFGI++G MT+ H+ T  Q                   NI+P+ST                 NG+A RVPT +           K    +E+  A +E+++   KGIL   +E +VS DF  +D SS
Sbjct:   96 ESTGVFTTTEKASAHLKGVCKKVIISAPS-ADAPMFVCGVNLDAYDSKYKVISNASCTTNCLAPLAKVIHDKFGIVQGLMTSVHATTATQKTVDGPSNKDWLGGRSVGNNIIPSSTGAAKAVGKVIPSLNGKLNGLAFRVPTVDVSVVDLVVRLEKPASYDEIKQAIKEASETTHKGILGYTEEKVVSTDFTGNDNSS 292          
BLAST of BQ623590 vs. ExPASy Swiss-Prot
Match: G3P_ENTAE (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Enterobacter aerogenes GN=gap PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.160e-29
Identity = 72/191 (37.70%), Postives = 98/191 (51.31%), Query Frame = 2
Query:    2 EGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 571
            E TG+F+  E A KHI AGAKKV++T P K + P +V G N + Y   + I+SN SCTTNCLAP  KV++  FGII+G MTT H+ T  Q                   NI+P+ST                  G+A RVPTPN           K    EE+  A + +++  +KG+L   ++ +VS DF
Sbjct:   80 EATGIFLTDETARKHITAGAKKVVLTGPSKDNTPMFVRGANFETYAGQD-IVSNRSCTTNCLAPLAKVINDNFGIIEGLMTTVHATTATQKTVDGPSHKDWRGGRGAAQNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTPNVSVVDLTVRLEKAASYEEIKKAIKAASEGPMKGVLGYTEDDVVSTDF 269          
BLAST of BQ623590 vs. ExPASy Swiss-Prot
Match: G3P_CURLU (Glyceraldehyde-3-phosphate dehydrogenase OS=Curvularia lunata GN=GPD PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.160e-29
Identity = 74/198 (37.37%), Postives = 102/198 (51.52%), Query Frame = 2
Query:    2 EGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSS 592
            E TGVF   E A  H++ GAKKV+I+AP   D P +V+GVN + YK D  ++SN+SCTTNCLAP  KV+  K+ II+G MTT HSYT  Q                   NI+P+ST                  G+A+RVPT N           K    +E+  A +E+++  L GIL   ++ +V+ D    + SS
Sbjct:   96 ESTGVFTTTEKAKAHLKGGAKKVVISAPS-ADAPMFVMGVNHETYKSDIEVLSNSSCTTNCLAPLAKVIHDKYTIIEGLMTTIHSYTATQKVVDGPSAKDWRGGRTAAQNIIPSSTGAAKAVGKVIPELNGKLTGMAMRVPTANVSVVDLTVRIEKGASYDEIKQAVKEASEGPLSGILGYTEDDIVTTDLNGDNRSS 292          
BLAST of BQ623590 vs. ExPASy Swiss-Prot
Match: G3P1_YEAST (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Saccharomyces cerevisiae GN=TDH1 PE=1 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 1.160e-29
Identity = 74/191 (38.74%), Postives = 100/191 (52.36%), Query Frame = 2
Query:    2 EGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 571
            + TGVF + + A KHI AGAKKV+ITAP     P +VVGVN   Y PD+ I+SNASCTTNCLAP  KV++  FGI +G MTT HS T  Q                   NI+P+ST                  G+A RVPT +           K+   +++  A + +A+  +KG+L   ++ +VS DF
Sbjct:   95 DSTGVFKELDTAQKHIDAGAKKVVITAPSSS-APMFVVGVNHTKYTPDKKIVSNASCTTNCLAPLAKVINDAFGIEEGLMTTVHSMTATQKTVDGPSHKDWRGGRTASGNIIPSSTGAAKAVGKVLPELQGKLTGMAFRVPTVDVSVVDLTVKLEKEATYDQIKKAVKAAAEGPMKGVLGYTEDAVVSSDF 284          
BLAST of BQ623590 vs. ExPASy Swiss-Prot
Match: G3P_SPECI (Glyceraldehyde-3-phosphate dehydrogenase OS=Spermophilus citellus GN=GAPDH PE=2 SV=3)

HSP 1 Score: 129.413 bits (324), Expect = 1.515e-29
Identity = 73/198 (36.87%), Postives = 99/198 (50.00%), Query Frame = 2
Query:    2 EGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSS 592
            E TGVF   E AG H++ GAK+V+I+AP   D P +V+GVN + Y     I+SNASCTTNCLAP  KV+   FGI++G MTT H+ T  Q                   NI+P ST                  G+A RVPTPN           K    +++    +++++  LKGIL   ++ +VS DF     SS
Sbjct:   95 ESTGVFTTMEKAGAHLKGGAKRVIISAPS-ADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSS 291          
BLAST of BQ623590 vs. ExPASy Swiss-Prot
Match: G3P_RABIT (Glyceraldehyde-3-phosphate dehydrogenase OS=Oryctolagus cuniculus GN=GAPDH PE=1 SV=3)

HSP 1 Score: 129.413 bits (324), Expect = 1.515e-29
Identity = 73/198 (36.87%), Postives = 100/198 (50.51%), Query Frame = 2
Query:    2 EGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSS 592
            E TGVF   E AG H++ GAK+V+I+AP   D P +V+GVN + Y     I+SNASCTTNCLAP  KV+   FGI++G MTT H+ T  Q                   NI+P ST                  G+A RVPTPN           K    +++    +++++  LKGIL   ++ +VS DF  +  SS
Sbjct:   95 ESTGVFTTMEKAGAHLKGGAKRVIISAPS-ADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDHFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSATHSS 291          
BLAST of BQ623590 vs. ExPASy Swiss-Prot
Match: G3P_MUSPF (Glyceraldehyde-3-phosphate dehydrogenase OS=Mustela putorius furo GN=GAPDH PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.515e-29
Identity = 73/198 (36.87%), Postives = 99/198 (50.00%), Query Frame = 2
Query:    2 EGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSS 592
            E TGVF   E AG H++ GAK+V+I+AP   D P +V+GVN + Y     I+SNASCTTNCLAP  KV+   FGI++G MTT H+ T  Q                   NI+P ST                  G+A RVPTPN           K    +++    +++++  LKGIL   ++ +VS DF     SS
Sbjct:   95 ESTGVFTTMEKAGAHLKGGAKRVIISAPS-ADAPMFVMGVNHEKYDNSLKIVSNASCTTNCLAPLAKVIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKAAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDTHSS 291          
The following BLAST results are available for this feature:
BLAST of BQ623590 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
G3P_COLGL8.879e-3038.42Glyceraldehyde-3-phosphate dehydrogenase OS=Collet... [more]
G3P_BOVIN8.879e-3037.37Glyceraldehyde-3-phosphate dehydrogenase OS=Bos ta... [more]
G3P_BORBU8.879e-3039.22Glyceraldehyde-3-phosphate dehydrogenase OS=Borrel... [more]
G3P_PHACH1.160e-2938.38Glyceraldehyde-3-phosphate dehydrogenase OS=Phaner... [more]
G3P_ENTAE1.160e-2937.70Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P_CURLU1.160e-2937.37Glyceraldehyde-3-phosphate dehydrogenase OS=Curvul... [more]
G3P1_YEAST1.160e-2938.74Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Sacc... [more]
G3P_SPECI1.515e-2936.87Glyceraldehyde-3-phosphate dehydrogenase OS=Spermo... [more]
G3P_RABIT1.515e-2936.87Glyceraldehyde-3-phosphate dehydrogenase OS=Orycto... [more]
G3P_MUSPF1.515e-2936.87Glyceraldehyde-3-phosphate dehydrogenase OS=Mustel... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_00681 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00681 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623590 ID=BQ623590; Name=BQ623590; organism=Citrus sinensis; type=EST; length=637bp
TGAAGGGACAGGAGTGTTTGTAGACAGAGAGGGTGCGGGCAAGCACATTC
AGGCTGGTGCCAAGAAAGTACTTATTACAGCCCCCGGCAAGGGTGACATC
CCAACCTACGTTGTTGGTGTCAATGCGGATGCTTACAAACCAGATGAGCC
CATCATCAGCAATGCTTCTTGCACAACCAACTGCCTTGCCCCATTCGTCA
AGGTTCTTGACCAGAAGTTTGGCATTATCAAGGGAACCATGACCACCACA
CACTCGTACACTGGCGACCAAAGACTACTCGATGCTAGCCACCGTGACCT
CAGGCGTGCAAGAGCAGCTGCACTCAACATTGTCCCAACATCAACTGGTG
CGGCAAAAGCTGTGGCCCTTGTCCTCCCAGCACTCAAAGGCAAACTAAAC
GGCATTGCCCTTCGTGTGCCAACACCAAACGTCTCGGTTGTTGATCTTGT
CGTTCAGGTGTCCAAGAAAACCTTCGCAGAAGAGGTGAACGCCGCCTTCA
GAGAAAGCGCTGACAATGAGCTGAAAGGCATCCTCTCCGTGTGCGACGAG
CCCCTTGTTTCGGTCGACTTCAGGTGCTCTGATGTATCCTCACCGTTGAT
TCATCTCTCACACTTGTCATGGGAGACGACATGGTTA
back to top