BQ623590

Overview
NameBQ623590
Unique NameBQ623590
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length637
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623590 vs. ExPASy Swiss-Prot
Match: E4PD_SALPA (D-erythrose-4-phosphate dehydrogenase OS=Salmonella paratyphi A GN=epd PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.492e-26
Identity = 68/189 (35.98%), Postives = 91/189 (48.15%), Query Frame = 2
Query:    8 TGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 571
            TGV+ ++E    HI AGAKKVL + PG  D+  T V GVN +  + +  I+SNASCTTNC+ P +K+LD  +GI  GT+T  HS   DQ                  +I+P  T                   IA+RVPT N           K   A EVN   +++A     GI+   + PLVS+DF
Sbjct:  100 TGVYGNQEHGEAHIAAGAKKVLFSHPGSNDLDATVVFGVNQNQLRAEHRIVSNASCTTNCIIPVIKLLDDAYGIESGTVTAIHSAMNDQQVIDAYHSDLRRTRAASQSIIPVDTKLAAGITRIFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKASEVNQLLQKAAQGAFHGIVDYTESPLVSIDF 288          
BLAST of BQ623590 vs. ExPASy Swiss-Prot
Match: E4PD_CITK8 (D-erythrose-4-phosphate dehydrogenase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=epd PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.492e-26
Identity = 69/189 (36.51%), Postives = 92/189 (48.68%), Query Frame = 2
Query:    8 TGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 571
            TGV+ +RE    H+ AGAKKVL + PG  D+  T V GVN +  + +  I+SNASCTTNC+ P +K+LD  +GI  GT+TT HS   DQ                  +I+P  T                   IA+RVPT N           K   A EVN   +++A     GI+   + PLVS+DF
Sbjct:  100 TGVYGNREHGEAHLAAGAKKVLFSHPGSHDLDATVVFGVNQEQLRAEHRIVSNASCTTNCIIPVIKLLDDAYGIESGTVTTIHSAMHDQQVIDAYHSDLRRTRAASQSIIPVDTKLAAGITRIFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKANEVNQLLQKAAHGAFHGIVDYTELPLVSIDF 288          
BLAST of BQ623590 vs. ExPASy Swiss-Prot
Match: G3P_DICDI (Glyceraldehyde-3-phosphate dehydrogenase OS=Dictyostelium discoideum GN=gpdA PE=1 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 4.560e-26
Identity = 66/192 (34.38%), Postives = 97/192 (50.52%), Query Frame = 2
Query:    2 EGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNE-LKGILSVCDEPLVSVDF 571
            E TG+F+  E AG H++ GAKKV+I+AP   D P YV+GVN + Y+    +ISNASCTTNCLAP  K++ + FGI++G MTT H+ T  Q                   NI+P ST                  G++ RVP  +           KK   EE+    + +++++  K  +   ++ +VS DF
Sbjct:   96 ESTGLFLSTEKAGVHLKGGAKKVVISAPST-DAPMYVMGVNEETYESSHDVISNASCTTNCLAPLAKIIHENFGIVEGLMTTVHAITATQKTVDGPSGKDWRAGRSALSNIIPASTGAAKAVGKVLPALNGKLTGMSFRVPNCDVSVVDLTVRLEKKATYEEIKKVMKAASESDKYKRYIGYTEDEVVSTDF 286          
BLAST of BQ623590 vs. ExPASy Swiss-Prot
Match: G3P_CLOPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Clostridium pasteurianum GN=gap PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.560e-26
Identity = 72/191 (37.70%), Postives = 92/191 (48.17%), Query Frame = 2
Query:    2 EGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ--XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVD 568
            E TG F  +E A  H++AGAKKV+I+AP   D+ T V  VN +     E +IS ASCTTNCLAP  KVL+ KFGI KG MTT H+YT DQ                    +I+P ST                 +G A RVP P            K    EE+NAA +E+A+          ++ +VS D
Sbjct:   94 ECTGFFTKKEKAEAHVRAGAKKVVISAPAGNDLKTIVFNVNNEDLDGTETVISGASCTTNCLAPMAKVLNDKFGIEKGFMTTIHAYTNDQNTLDGPHRKGDFRRARAAAVSIIPNSTGAAKAIAQVIPELKGKLDGNAQRVPVPTGSVTELISVLKKNVTVEEINAAMKEAANES----FGYTEDEIVSAD 280          
BLAST of BQ623590 vs. ExPASy Swiss-Prot
Match: E4PD_ERWCT (D-erythrose-4-phosphate dehydrogenase OS=Erwinia carotovora subsp. atroseptica GN=epd PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 4.560e-26
Identity = 69/189 (36.51%), Postives = 90/189 (47.62%), Query Frame = 2
Query:    8 TGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 571
            +GV+  RE    H+ AGAKKVL + PG  D+  T V GVN D  +    I+SNASCTTNC+ P +K+LD  FGI  GT+TT HS   DQ                  +I+P  T                   I++RVPT N           K     E+NA  ++SA    +GI+   + PLVS DF
Sbjct:  100 SGVYGSREDGEAHLAAGAKKVLFSHPGTTDLDATVVFGVNHDRLESGHRIVSNASCTTNCIIPVIKLLDDAFGIENGTVTTIHSSMNDQPVIDAYHHDLRRTRAASQSIIPVDTKLSAGITRIFPQFVDRFEAISVRVPTINVTAIDLSVSVRKAVNVNEINALLQKSAHESFRGIVDYTELPLVSADF 288          
BLAST of BQ623590 vs. ExPASy Swiss-Prot
Match: G3P_TREPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Treponema pallidum GN=gap PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 5.956e-26
Identity = 73/205 (35.61%), Postives = 104/205 (50.73%), Query Frame = 2
Query:    2 EGTGVFVDREGAGKHIQAGAKKVLITAPGKGD-----IPTYVVGVNADAYKPDE-PIISNASCTTNCLAPFVKV-LDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXX-NIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSS 592
            E TG++ +    G H++AGAK+V+I+AP K       + T V+GVN   + P E  ++SNASCTTNCLAP V V L +  GI  G MTT HSYT  Q                   NI+P++T                  G+A RVPTP            K+T   ++NA  ++++++ L+G+L  CDE +VS D   +  SS
Sbjct:  101 EATGIYANESSYG-HLEAGAKRVIISAPAKSSDASKPVKTIVMGVNEHEFDPAEHKVVSNASCTTNCLAPVVHVFLKEGVGIETGLMTTIHSYTATQKTVDGVSLKDWRGGRAAAVNIIPSTTGAAKAVGEVLPSTRGKLTGMAFRVPTPTGSVVDLTFRTEKETSVADLNAMLKKASESYLRGVLQYCDEDIVSADVIHNQYSS 304          
BLAST of BQ623590 vs. ExPASy Swiss-Prot
Match: G3PT_DANRE (Glyceraldehyde 3-phosphate dehydrogenase, testis-specific OS=Danio rerio GN=gapdhs PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 7.779e-26
Identity = 69/192 (35.94%), Postives = 94/192 (48.96%), Query Frame = 2
Query:    2 EGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDE-PIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 571
            E TGVF+  E A  HIQ GAK+V+++AP   D P +V+GVN D Y P    I+SNASCTTNCLAP  KV+   FGI +  MTT H+YT  Q                   NI+P ST                  G+A RVP  +          ++      +  + +++A   +KGIL   ++ +VS DF
Sbjct:   96 ESTGVFLSIEKASAHIQGGAKRVVVSAPSP-DAPMFVMGVNQDKYDPSSMTIVSNASCTTNCLAPLAKVIHDNFGIEEALMTTVHAYTATQKTVDGPSAKAWRDGRGAHQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPVADVSVVDLTCRLTRPASYANIKESVKKAAHGPMKGILGYTEDSVVSSDF 286          
BLAST of BQ623590 vs. ExPASy Swiss-Prot
Match: G3P1_GIALA (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Giardia lamblia GN=GAP1 PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 7.779e-26
Identity = 69/192 (35.94%), Postives = 96/192 (50.00%), Query Frame = 2
Query:    2 EGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDE-PIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 571
            E TG F  ++ A  HI  G K+V+I+AP   D P +V G N + Y P    +ISNASCTTNCLAP   V+++KFGI +G MTT H+ T  Q                   N++P+ST                  G+A RVP P+           K    +E+ A  +  ++NELKGI++  +E +VS DF
Sbjct:   96 ECTGRFTTKKDAELHITGGCKRVIISAPS-ADAPMFVCGCNLETYDPSTMKVISNASCTTNCLAPLAMVVNKKFGIKEGLMTTVHAVTATQLPVDGPSKKDWRGGRSCGANVIPSSTGAAKAVGKVLPALNGKLTGMAFRVPVPDVSVVDLTCTLEKDATYDEICAEIKRGSENELKGIMTYTNEDVVSSDF 286          
BLAST of BQ623590 vs. ExPASy Swiss-Prot
Match: E4PD_SHEHH (D-erythrose-4-phosphate dehydrogenase OS=Shewanella halifaxensis (strain HAW-EB4) GN=epd PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 7.779e-26
Identity = 66/198 (33.33%), Postives = 94/198 (47.47%), Query Frame = 2
Query:    2 EGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSS 592
            E TGV  DR+    H++AGAK+VLI+ P   D+  T V GVN D  + +  ++SNASCTTNC+ P + VLD+ F +  G +TT HS   DQ                  +I+P  T                   I++RVPT N          +K+   E VN   +++ +    G++   +EPLVS DF     SS
Sbjct:   97 EATGVINDRQECEAHLKAGAKQVLISHPSSNDVDATIVYGVNQDLLRAEHTVVSNASCTTNCIVPVIDVLDRHFEVKSGAITTIHSAMNDQQVIDAYHDDLRRTRAAGQSIIPVDTKLARGIERILPHMKNKFEAISVRVPTINVTAIDLSVTLNKRVDIELVNRVLKQATEGSFSGVVGFTNEPLVSCDFNHDPRSS 294          
BLAST of BQ623590 vs. ExPASy Swiss-Prot
Match: E4PD_PECCP (D-erythrose-4-phosphate dehydrogenase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=epd PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 7.779e-26
Identity = 68/189 (35.98%), Postives = 90/189 (47.62%), Query Frame = 2
Query:    8 TGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 571
            +GV+  RE    H+ AGAKKVL + PG  D+  T V GVN    + +  I+SNASCTTNC+ P +K+LD  FGI  GT+TT HS   DQ                  +I+P  T                   I++RVPT N           K     E+NA  ++SA    +GI+   + PLVS DF
Sbjct:  100 SGVYGSREDGEAHLAAGAKKVLFSHPGTADLDATVVFGVNHQQLEREHRIVSNASCTTNCIIPVIKLLDDAFGIENGTVTTIHSSMNDQPVIDAYHHDLRRTRAASQSIIPVDTKLSAGITRIFPQFVDRFEAISVRVPTINVTAIDLSVSVRKAVNVNEINALLQKSAHESFRGIVDYTELPLVSADF 288          
The following BLAST results are available for this feature:
BLAST of BQ623590 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
E4PD_SALPA3.492e-2635.98D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_CITK83.492e-2636.51D-erythrose-4-phosphate dehydrogenase OS=Citrobact... [more]
G3P_DICDI4.560e-2634.38Glyceraldehyde-3-phosphate dehydrogenase OS=Dictyo... [more]
G3P_CLOPA4.560e-2637.70Glyceraldehyde-3-phosphate dehydrogenase OS=Clostr... [more]
E4PD_ERWCT4.560e-2636.51D-erythrose-4-phosphate dehydrogenase OS=Erwinia c... [more]
G3P_TREPA5.956e-2635.61Glyceraldehyde-3-phosphate dehydrogenase OS=Trepon... [more]
G3PT_DANRE7.779e-2635.94Glyceraldehyde 3-phosphate dehydrogenase, testis-s... [more]
G3P1_GIALA7.779e-2635.94Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Giar... [more]
E4PD_SHEHH7.779e-2633.33D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
E4PD_PECCP7.779e-2635.98D-erythrose-4-phosphate dehydrogenase OS=Pectobact... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00681 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00681 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623590 ID=BQ623590; Name=BQ623590; organism=Citrus sinensis; type=EST; length=637bp
TGAAGGGACAGGAGTGTTTGTAGACAGAGAGGGTGCGGGCAAGCACATTC
AGGCTGGTGCCAAGAAAGTACTTATTACAGCCCCCGGCAAGGGTGACATC
CCAACCTACGTTGTTGGTGTCAATGCGGATGCTTACAAACCAGATGAGCC
CATCATCAGCAATGCTTCTTGCACAACCAACTGCCTTGCCCCATTCGTCA
AGGTTCTTGACCAGAAGTTTGGCATTATCAAGGGAACCATGACCACCACA
CACTCGTACACTGGCGACCAAAGACTACTCGATGCTAGCCACCGTGACCT
CAGGCGTGCAAGAGCAGCTGCACTCAACATTGTCCCAACATCAACTGGTG
CGGCAAAAGCTGTGGCCCTTGTCCTCCCAGCACTCAAAGGCAAACTAAAC
GGCATTGCCCTTCGTGTGCCAACACCAAACGTCTCGGTTGTTGATCTTGT
CGTTCAGGTGTCCAAGAAAACCTTCGCAGAAGAGGTGAACGCCGCCTTCA
GAGAAAGCGCTGACAATGAGCTGAAAGGCATCCTCTCCGTGTGCGACGAG
CCCCTTGTTTCGGTCGACTTCAGGTGCTCTGATGTATCCTCACCGTTGAT
TCATCTCTCACACTTGTCATGGGAGACGACATGGTTA
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