BQ623590

Overview
NameBQ623590
Unique NameBQ623590
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length637
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10901 contig Csv1_Contig10901:708..1345. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623590 vs. ExPASy Swiss-Prot
Match: E4PD_ENT38 (D-erythrose-4-phosphate dehydrogenase OS=Enterobacter sp. (strain 638) GN=epd PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 1.016e-25
Identity = 70/189 (37.04%), Postives = 91/189 (48.15%), Query Frame = 2
Query:    8 TGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 571
            TGV+ +RE    H+ AGAKKVL + PG  D+  T V GVN    + +  I+SNASCTTNC+ P +K+LD  +GI  GT+TT HS   DQ                  +I+P  T                   IA+RVPT N           K   A EVN   +++A     GI+   + PLVSVDF
Sbjct:  100 TGVYGNREHGEAHLAAGAKKVLFSHPGGHDLDATVVYGVNHHELQAEHRIVSNASCTTNCIIPVIKLLDDAYGIESGTVTTIHSAMHDQQVIDAYHPDLRRTRAASQSIIPVDTKLAAGITRIFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKASEVNLLLQKAAQGSFHGIVDYTELPLVSVDF 288          
BLAST of BQ623590 vs. ExPASy Swiss-Prot
Match: G3P_ONCMY (Glyceraldehyde-3-phosphate dehydrogenase OS=Oncorhynchus mykiss GN=gapdh PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.956e-25
Identity = 68/192 (35.42%), Postives = 94/192 (48.96%), Query Frame = 2
Query:    2 EGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDE-PIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ-XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 571
            E TGVF+  + A  HIQ GAK+V+++AP   D P +V+GVN D + P    I+SNASCTTNCLAP  KV+   FGI +  MTT H+YT  Q                   NI+P ST                  G+A RVP  +          S+     E+  A +++A+  +KG +   +  +VS DF
Sbjct:   96 ESTGVFLSIDKASSHIQGGAKRVVVSAPSP-DAPMFVMGVNEDKFDPSSMTIVSNASCTTNCLAPLAKVIHDNFGIEEALMTTVHAYTATQKTVDGPSAKAWRDGRGAHQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPVADVSVVELTCRLSRPGSYAEIKGAVKKAAEGPMKGYVGYTEYSVVSSDF 286          
BLAST of BQ623590 vs. ExPASy Swiss-Prot
Match: E4PD_VIBVY (D-erythrose-4-phosphate dehydrogenase OS=Vibrio vulnificus (strain YJ016) GN=epd PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.860e-25
Identity = 65/189 (34.39%), Postives = 91/189 (48.15%), Query Frame = 2
Query:    8 TGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 571
            TGVF  +    +HI+AGAKKVL + PG  D+  T + GVN +  K +  ++SN SCTTNC+ P +KVLD+ FGI  GT+TT HS   DQ                  +I+P  T                   I++RVPT N          +      +VN     ++   L+GI+   + PLVS+DF
Sbjct:  109 TGVFGCQADGLEHIKAGAKKVLFSHPGASDLDNTIIYGVNHETLKAEHNVVSNGSCTTNCIVPIIKVLDEAFGIESGTITTIHSSMNDQQVIDAYHSDLRRTRAASQSIIPVDTKLHKGIERIFPKFSNKFEAISVRVPTVNVTAMDLSVTINTNVKVNDVNQTIVNASQCTLRGIVDYTEAPLVSIDF 297          
BLAST of BQ623590 vs. ExPASy Swiss-Prot
Match: E4PD_VIBVU (D-erythrose-4-phosphate dehydrogenase OS=Vibrio vulnificus GN=epd PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.860e-25
Identity = 65/189 (34.39%), Postives = 91/189 (48.15%), Query Frame = 2
Query:    8 TGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 571
            TGVF  +    +HI+AGAKKVL + PG  D+  T + GVN +  K +  ++SN SCTTNC+ P +KVLD+ FGI  GT+TT HS   DQ                  +I+P  T                   I++RVPT N          +      +VN     ++   L+GI+   + PLVS+DF
Sbjct:  109 TGVFGCQADGLEHIKAGAKKVLFSHPGASDLDNTIIYGVNHETLKAEHNVVSNGSCTTNCIVPIIKVLDEAFGIESGTITTIHSSMNDQQVIDAYHSDLRRTRAASQSIIPVDTKLHKGIERIFPKFSNKFEAISVRVPTVNVTAMDLSVTINTNVKVNDVNQTIVNASQCTLRGIVDYTEAPLVSIDF 297          
BLAST of BQ623590 vs. ExPASy Swiss-Prot
Match: E4PD_ENTS8 (D-erythrose-4-phosphate dehydrogenase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=epd PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 5.042e-25
Identity = 67/189 (35.45%), Postives = 90/189 (47.62%), Query Frame = 2
Query:    8 TGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 571
            TGV+  R     H++AGA+KVL + PG  D+  T V GVN +  + +  I+SNASCTTNC+ P +K++D  FGI  GT+TT HS   DQ                  +I+P  T                   IA+RVPT N           K   A EVN   +++A     GI+   + PLVS DF
Sbjct:  100 TGVYGSRADGIAHLEAGARKVLFSHPGGNDLDATVVYGVNEEELRAEHRIVSNASCTTNCIIPIIKLMDDAFGIESGTVTTIHSAMHDQQVIDAYHPDLRRTRAASQSIIPVDTRLAAGITRIFPKFHDRFEAIAVRVPTINVTAIDLSVTVQKPVKAYEVNLLLQKAAQGAFHGIVDYTELPLVSTDF 288          
BLAST of BQ623590 vs. ExPASy Swiss-Prot
Match: E4PD_VIBHB (D-erythrose-4-phosphate dehydrogenase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=epd PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 8.600e-25
Identity = 64/189 (33.86%), Postives = 89/189 (47.09%), Query Frame = 2
Query:    8 TGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 571
            TGVF  +     HI+AGA+KVL + PG  D+  T + GVN +  K +  ++SN SCTTNC+ P +KVLD+ FGI  GT+TT HS   DQ                  +I+P  T                   I++RVPT N          S      +VN     ++   L+ I+   + PLVS+DF
Sbjct:  104 TGVFGSQADGQAHIEAGAQKVLFSHPGASDLDNTIIYGVNHETLKDEHRVVSNGSCTTNCIVPIIKVLDEAFGIESGTITTIHSSMNDQQVIDAYHNDLRRTRAASQSIIPVDTKLHKGIERIFPKFSNKFEAISVRVPTVNVTAMDLSVTISTNVKVNDVNQTIVNASQCTLRDIVDYTESPLVSIDF 292          
BLAST of BQ623590 vs. ExPASy Swiss-Prot
Match: G3P1_STAES (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=gapA1 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.467e-24
Identity = 66/174 (37.93%), Postives = 87/174 (50.00%), Query Frame = 2
Query:    2 EGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ--XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKK-TFAEEVNAAFRESAD 514
            E TG + D+E A  HI AGAKKVLI+AP KGD+ T V   N D     E ++S ASCTTN LAP  KVL  +FG+++G MTT H+YTGDQ                    NI+P ST                 +G A RVP              K+    ++VN+A ++++D
Sbjct:   95 ECTGFYTDKEKAQAHIDAGAKKVLISAPAKGDVKTIVFNTNHDTLDGSETVVSGASCTTNSLAPVAKVLSDEFGLVEGFMTTIHAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVATGSLTELTVVLDKQDVTVDQVNSAMKQASD 268          
BLAST of BQ623590 vs. ExPASy Swiss-Prot
Match: G3P1_STAEQ (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=gapA1 PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.467e-24
Identity = 66/174 (37.93%), Postives = 87/174 (50.00%), Query Frame = 2
Query:    2 EGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQ--XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKK-TFAEEVNAAFRESAD 514
            E TG + D+E A  HI AGAKKVLI+AP KGD+ T V   N D     E ++S ASCTTN LAP  KVL  +FG+++G MTT H+YTGDQ                    NI+P ST                 +G A RVP              K+    ++VN+A ++++D
Sbjct:   95 ECTGFYTDKEKAQAHIDAGAKKVLISAPAKGDVKTIVFNTNHDTLDGSETVVSGASCTTNSLAPVAKVLSDEFGLVEGFMTTIHAYTGDQNTQDAPHRKGDKRRARAAAENIIPNSTGAAKAIGKVIPEIDGKLDGGAQRVPVATGSLTELTVVLDKQDVTVDQVNSAMKQASD 268          
BLAST of BQ623590 vs. ExPASy Swiss-Prot
Match: E4PD_VIBPA (D-erythrose-4-phosphate dehydrogenase OS=Vibrio parahaemolyticus GN=epd PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.467e-24
Identity = 63/189 (33.33%), Postives = 89/189 (47.09%), Query Frame = 2
Query:    8 TGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDF 571
            TGV+  +     HI+AGAKKVL + PG  D+  T + GVN +  K +  ++SN SCTTNC+ P +KVLD+ FGI  GT+TT HS   DQ                  +I+P  T                   I++RVPT N          +      +VN     ++   L+ I+   + PLVS+DF
Sbjct:  104 TGVYGSKADGLAHIEAGAKKVLFSHPGANDLDNTIIYGVNHETLKDEHRVVSNGSCTTNCIVPIIKVLDEAFGIESGTITTIHSSMNDQQVIDAYHNDLRRTRAASQSIIPVDTKLHKGIERIFPKFSNKFEAISVRVPTVNVTAMDLSVTINTNVKVNDVNQTIVNASQCTLRNIVDYTESPLVSIDF 292          
BLAST of BQ623590 vs. ExPASy Swiss-Prot
Match: E4PD_SHEDO (D-erythrose-4-phosphate dehydrogenase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=epd PE=3 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 1.467e-24
Identity = 66/198 (33.33%), Postives = 90/198 (45.45%), Query Frame = 2
Query:    2 EGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIP-TYVVGVNADAYKPDEPIISNASCTTNCLAPFVKVLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCSDVSS 592
            E +G  ++RE    HI +GAK+VLI+ P   D+  T V GVN      +  ++SNASCTTNC+ P + VLD  FG+I G +TT HS   DQ                  +I+P  T                   I++RVPT N            +     +N+  +++A     GIL   DEPLVS DF     SS
Sbjct:   97 EASGSLIEREACEAHIISGAKQVLISHPSSQDVDATIVYGVNHHLLAAEHTVVSNASCTTNCIVPVIDVLDSHFGVISGAITTIHSAMNDQQVIDAYHDDLRRTRAAGQSIIPVDTKLARGIERILPKMKDKFEAISVRVPTINVTAIDVSVTLRDRVDISIINSVLQQAAKGRFDGILGYTDEPLVSCDFNHDPRSS 294          
The following BLAST results are available for this feature:
BLAST of BQ623590 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 348
Match NameE-valueIdentityDescription
E4PD_ENT381.016e-2537.04D-erythrose-4-phosphate dehydrogenase OS=Enterobac... [more]
G3P_ONCMY2.956e-2535.42Glyceraldehyde-3-phosphate dehydrogenase OS=Oncorh... [more]
E4PD_VIBVY3.860e-2534.39D-erythrose-4-phosphate dehydrogenase OS=Vibrio vu... [more]
E4PD_VIBVU3.860e-2534.39D-erythrose-4-phosphate dehydrogenase OS=Vibrio vu... [more]
E4PD_ENTS85.042e-2535.45D-erythrose-4-phosphate dehydrogenase OS=Enterobac... [more]
E4PD_VIBHB8.600e-2533.86D-erythrose-4-phosphate dehydrogenase OS=Vibrio ha... [more]
G3P1_STAES1.467e-2437.93Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
G3P1_STAEQ1.467e-2437.93Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Stap... [more]
E4PD_VIBPA1.467e-2433.33D-erythrose-4-phosphate dehydrogenase OS=Vibrio pa... [more]
E4PD_SHEDO1.467e-2433.33D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00681 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00681 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623590 ID=BQ623590; Name=BQ623590; organism=Citrus sinensis; type=EST; length=637bp
TGAAGGGACAGGAGTGTTTGTAGACAGAGAGGGTGCGGGCAAGCACATTC
AGGCTGGTGCCAAGAAAGTACTTATTACAGCCCCCGGCAAGGGTGACATC
CCAACCTACGTTGTTGGTGTCAATGCGGATGCTTACAAACCAGATGAGCC
CATCATCAGCAATGCTTCTTGCACAACCAACTGCCTTGCCCCATTCGTCA
AGGTTCTTGACCAGAAGTTTGGCATTATCAAGGGAACCATGACCACCACA
CACTCGTACACTGGCGACCAAAGACTACTCGATGCTAGCCACCGTGACCT
CAGGCGTGCAAGAGCAGCTGCACTCAACATTGTCCCAACATCAACTGGTG
CGGCAAAAGCTGTGGCCCTTGTCCTCCCAGCACTCAAAGGCAAACTAAAC
GGCATTGCCCTTCGTGTGCCAACACCAAACGTCTCGGTTGTTGATCTTGT
CGTTCAGGTGTCCAAGAAAACCTTCGCAGAAGAGGTGAACGCCGCCTTCA
GAGAAAGCGCTGACAATGAGCTGAAAGGCATCCTCTCCGTGTGCGACGAG
CCCCTTGTTTCGGTCGACTTCAGGTGCTCTGATGTATCCTCACCGTTGAT
TCATCTCTCACACTTGTCATGGGAGACGACATGGTTA
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