BQ623592

Overview
NameBQ623592
Unique NameBQ623592
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length588
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8865 contig Csv1_Contig8865:76..662. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYCB_TAKRU (Cytochrome c-b OS=Takifugu rubripes GN=cyc-B PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 5.367e-28
Identity = 57/88 (64.77%), Postives = 69/88 (78.41%), Query Frame = 2
Query:   86 QCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 349
            QCHTVE+G  HK GPNL GLFGR++G   G+SY+ ANK+  + W E+TL  YL NPKKYIPGTKM+F G+KK  +RADLIAYLK ST+
Sbjct:   18 QCHTVEQGGKHKTGPNLWGLFGRKTGQAEGFSYTDANKSKGIIWSEETLMVYLENPKKYIPGTKMIFAGIKKKTERADLIAYLKSSTS 105          
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC_SQUSU (Cytochrome c OS=Squalus sucklii GN=cyc PE=1 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 6.562e-28
Identity = 55/88 (62.50%), Postives = 69/88 (78.41%), Query Frame = 2
Query:   86 QCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 349
            QCHTVE G  HK GPNL+GLFGR++G   G+SY+ ANK+  + W+++TL  YL NPKKYIPGTKM+F GLKK  +R DLIAYLK++ A
Sbjct:   17 QCHTVENGGKHKTGPNLSGLFGRKTGQAQGFSYTDANKSKGITWQQETLRIYLENPKKYIPGTKMIFAGLKKKSERQDLIAYLKKTAA 104          

HSP 2 Score: 21.1718 bits (43), Expect = 6.562e-28
Identity = 7/15 (46.67%), Postives = 11/15 (73.33%), Query Frame = 1
Query:   40 GNAKAGEKIFKTKCA 84
            G+ + G+K+F  KCA
Sbjct:    2 GDVEKGKKVFVQKCA 16          
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC_PICPA (Cytochrome c OS=Pichia pastoris GN=CYC1 PE=3 SV=3)

HSP 1 Score: 123.635 bits (309), Expect = 6.562e-28
Identity = 57/87 (65.52%), Postives = 65/87 (74.71%), Query Frame = 2
Query:   86 QCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 346
            QCHTVE G  HK GPNL+G+FGR+SG   GYSY+ ANK   V W E+T+ DYL NPKKYIPGTKM F GLKK +DR DLI YL  +T
Sbjct:   23 QCHTVEAGGPHKVGPNLHGVFGRKSGLAEGYSYTDANKRKGVEWSEQTMSDYLENPKKYIPGTKMAFGGLKKAKDRNDLITYLASAT 109          

HSP 2 Score: 21.1718 bits (43), Expect = 6.562e-28
Identity = 7/14 (50.00%), Postives = 10/14 (71.43%), Query Frame = 1
Query:   40 GNAKAGEKIFKTKC 81
            G+ K G  +FKT+C
Sbjct:    8 GSEKKGATLFKTRC 21          
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC_CANGA (Cytochrome c OS=Candida glabrata GN=CYC1 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 7.010e-28
Identity = 57/88 (64.77%), Postives = 68/88 (77.27%), Query Frame = 2
Query:   86 QCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 349
            QCHTVEKG  +K GPNL+G+FGR+SG   GYSY+ AN    V W+E  + DYL NPKKYIPGTKM F GLKK +DR DLIAYLK++T+
Sbjct:   16 QCHTVEKGGPNKVGPNLHGIFGRKSGQAAGYSYTDANIKKNVTWDEDNMSDYLTNPKKYIPGTKMAFGGLKKEKDRKDLIAYLKKATS 103          
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC_HELAS (Cytochrome c OS=Helix aspersa PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 8.544e-28
Identity = 53/87 (60.92%), Postives = 67/87 (77.01%), Query Frame = 2
Query:   86 QCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 346
            QCHTVE G  HK GPNL+GLFGR+ G  PG++Y+ ANK   + W+ +TL++YL NPKKYIPGTKMVF GLK   +R  LIAYL+++T
Sbjct:   16 QCHTVEAGGKHKTGPNLSGLFGRKQGQAPGFAYTDANKGKGITWKNQTLFEYLENPKKYIPGTKMVFAGLKBZTERVHLIAYLZZAT 102          

HSP 2 Score: 21.557 bits (44), Expect = 8.544e-28
Identity = 8/14 (57.14%), Postives = 10/14 (71.43%), Query Frame = 1
Query:   40 GNAKAGEKIFKTKC 81
            G A+ G+KIF  KC
Sbjct:    1 GZAZKGKKIFTQKC 14          
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC_TETNG (Cytochrome c OS=Tetraodon nigroviridis GN=cyc PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 9.155e-28
Identity = 56/88 (63.64%), Postives = 68/88 (77.27%), Query Frame = 2
Query:   86 QCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 349
            QCHTVE+G  HK GPNL GLFGR++G   G+SY+ ANK+  + W E TL +YL NPKKYIPGTKM+F G+KK  +R DLIAYLK ST+
Sbjct:   17 QCHTVEEGGKHKTGPNLWGLFGRKTGQAEGFSYTDANKSKGIIWNEDTLLEYLENPKKYIPGTKMIFAGIKKKAERQDLIAYLKSSTS 104          
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC_PACTA (Cytochrome c OS=Pachysolen tannophilus GN=CYC1 PE=3 SV=3)

HSP 1 Score: 120.553 bits (301), Expect = 1.448e-27
Identity = 55/87 (63.22%), Postives = 62/87 (71.26%), Query Frame = 2
Query:   86 QCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQST 346
            QCHT E G  HK GPNLNG+FGR SG   GYSY+ ANK     WE +T+ DYL NPKKYIPGTKM F GLKK +DR DL+ YL  +T
Sbjct:   23 QCHTTEAGGAHKVGPNLNGVFGRHSGQAEGYSYTDANKQKGALWEAQTMSDYLENPKKYIPGTKMAFGGLKKAKDRNDLVTYLLSAT 109          

HSP 2 Score: 23.0978 bits (48), Expect = 1.448e-27
Identity = 8/14 (57.14%), Postives = 11/14 (78.57%), Query Frame = 1
Query:   40 GNAKAGEKIFKTKC 81
            G+AK G  +FKT+C
Sbjct:    8 GSAKKGATLFKTRC 21          
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC_KATPE (Cytochrome c OS=Katsuwonus pelamis GN=cyc PE=1 SV=2)

HSP 1 Score: 122.479 bits (306), Expect = 1.562e-27
Identity = 55/88 (62.50%), Postives = 67/88 (76.14%), Query Frame = 2
Query:   86 QCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 349
            QCHTVE G  HK GPNL GLFGR++G   GYSY+ ANK+  + W E TL +YL NPKKYIPGTKM+F G+KK  +R DL+AYLK +T+
Sbjct:   17 QCHTVENGGKHKVGPNLWGLFGRKTGQAEGYSYTDANKSKGIVWNENTLMEYLENPKKYIPGTKMIFAGIKKKGERQDLVAYLKSATS 104          
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC_DANRE (Cytochrome c OS=Danio rerio GN=cyc PE=2 SV=3)

HSP 1 Score: 122.094 bits (305), Expect = 1.886e-27
Identity = 56/88 (63.64%), Postives = 68/88 (77.27%), Query Frame = 2
Query:   86 QCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 349
            QCHTVE G  HK GPNL GLFGR++G   G+SY+ ANK+  + W E TL +YL NPKKYIPGTKM+F G+KK  +RADLIAYLK +T+
Sbjct:   17 QCHTVENGGKHKVGPNLWGLFGRKTGQAEGFSYTDANKSKGIVWGEDTLMEYLENPKKYIPGTKMIFAGIKKKGERADLIAYLKSATS 104          

HSP 2 Score: 21.1718 bits (43), Expect = 1.886e-27
Identity = 7/15 (46.67%), Postives = 11/15 (73.33%), Query Frame = 1
Query:   40 GNAKAGEKIFKTKCA 84
            G+ + G+K+F  KCA
Sbjct:    2 GDVEKGKKVFVQKCA 16          
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC1_YEAST (Cytochrome c iso-1 OS=Saccharomyces cerevisiae GN=CYC1 PE=1 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 2.455e-27
Identity = 55/86 (63.95%), Postives = 64/86 (74.42%), Query Frame = 2
Query:   86 QCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQS 343
            QCHTVEKG  HK GPNL+G+FGR SG   GYSY+ AN    V W+E  + +YL NPKKYIPGTKM F GLKK +DR DLI YLK++
Sbjct:   22 QCHTVEKGGPHKVGPNLHGIFGRHSGQAEGYSYTDANIKKNVLWDENNMSEYLTNPKKYIPGTKMAFGGLKKEKDRNDLITYLKKA 107          

HSP 2 Score: 23.483 bits (49), Expect = 2.455e-27
Identity = 9/18 (50.00%), Postives = 12/18 (66.67%), Query Frame = 1
Query:   28 EAPPGNAKAGEKIFKTKC 81
            E   G+AK G  +FKT+C
Sbjct:    3 EFKAGSAKKGATLFKTRC 20          
The following BLAST results are available for this feature:
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
CYCB_TAKRU5.367e-2864.77Cytochrome c-b OS=Takifugu rubripes GN=cyc-B PE=3 ... [more]
CYC_SQUSU6.562e-2862.50Cytochrome c OS=Squalus sucklii GN=cyc PE=1 SV=2[more]
CYC_PICPA6.562e-2865.52Cytochrome c OS=Pichia pastoris GN=CYC1 PE=3 SV=3[more]
CYC_CANGA7.010e-2864.77Cytochrome c OS=Candida glabrata GN=CYC1 PE=3 SV=1[more]
CYC_HELAS8.544e-2860.92Cytochrome c OS=Helix aspersa PE=1 SV=1[more]
CYC_TETNG9.155e-2863.64Cytochrome c OS=Tetraodon nigroviridis GN=cyc PE=3... [more]
CYC_PACTA1.448e-2763.22Cytochrome c OS=Pachysolen tannophilus GN=CYC1 PE=... [more]
CYC_KATPE1.562e-2762.50Cytochrome c OS=Katsuwonus pelamis GN=cyc PE=1 SV=... [more]
CYC_DANRE1.886e-2763.64Cytochrome c OS=Danio rerio GN=cyc PE=2 SV=3[more]
CYC1_YEAST2.455e-2763.95Cytochrome c iso-1 OS=Saccharomyces cerevisiae GN=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00683 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00683 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623592 ID=BQ623592; Name=BQ623592; organism=Citrus sinensis; type=EST; length=588bp
AACACCACAATAATGGCGTCGTTTGATGAGGCACCTCCCGGCAATGCAAA
GGCCGGAGAGAAGATCTTCAAGACCAAGTGCGCCTCAGTGCCACACCGTC
GAGAAAGGCGCCGGTCACAAACAAGGTCCTAATTTGAACGGATTGTTTGG
AAGGCAATCGGGGACTACACCTGGGTACTCATACTCTGCGGCTAACAAGA
ACATGGCTGTGAATTGGGAGGAAAAGACTTTGTATGATTACTTGCTCAAC
CCTAAGAAGTACATTCCTGGAACAAAGATGGTATTCCCTGGATTGAAGAA
GCCTCAGGATCGTGCCGACCTTATTGCATATTTGAAACAATCTACTGCAT
AAGAACTTGCCGATAGTCAGTTTACCTATTCCATTTTGCAGTTGTTGAAG
ATTGTTTTGCGGTGCGGATATAGTACTGTTTTTTACCAATAAATTTTAAA
CATTTAAGGTTCAGCAATGTTCTTTGTAACTTGAGCATTGCTAATTTGAG
AAAAGGTTGCTGTCATTGGCAAACATAATATTCAATTGAATTTCCTGGTT
ATAATCATATTTCATGAATTTTGGGTGAAAAAAAAAAA
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