BQ623592

Overview
NameBQ623592
Unique NameBQ623592
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length588
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC_ASHGO (Cytochrome c OS=Ashbya gossypii GN=CYC1 PE=3 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.285e-25
Identity = 52/83 (62.65%), Postives = 61/83 (73.49%), Query Frame = 2
Query:   86 QCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYL 334
            QCHT EKG  HK GPNL+G+F RQSG   GYSY+ A  N  V W+ +++ DYL NPKKYIPGTKM F GLKK +DR DLI Y+
Sbjct:   23 QCHTTEKGGPHKVGPNLHGVFSRQSGQVSGYSYTDAMINRNVTWDAQSMSDYLENPKKYIPGTKMAFGGLKKEKDRNDLITYM 105          

HSP 2 Score: 23.8682 bits (50), Expect = 1.285e-25
Identity = 8/15 (53.33%), Postives = 11/15 (73.33%), Query Frame = 1
Query:   37 PGNAKAGEKIFKTKC 81
            PG+ K G  +FKT+C
Sbjct:    7 PGSEKKGATLFKTRC 21          
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC_YARLI (Cytochrome c OS=Yarrowia lipolytica GN=CYC1 PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.285e-25
Identity = 50/86 (58.14%), Postives = 61/86 (70.93%), Query Frame = 2
Query:   86 QCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQS 343
            QCHT E G  HK GPNL+G+  R SG   GYSYS ANK   + W  + L++YL NPKKYIPGTKM F GLKKP+DR DLI ++ ++
Sbjct:   21 QCHTTEAGGPHKVGPNLHGVINRHSGEAEGYSYSDANKRKGIEWTTEHLFEYLENPKKYIPGTKMAFGGLKKPKDRNDLITWMVEN 106          

HSP 2 Score: 24.6386 bits (52), Expect = 1.285e-25
Identity = 9/15 (60.00%), Postives = 12/15 (80.00%), Query Frame = 1
Query:   40 GNAKAGEKIFKTKCA 84
            G+AK G  +FKT+CA
Sbjct:    6 GSAKKGATLFKTRCA 20          
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC_KLULA (Cytochrome c OS=Kluyveromyces lactis GN=CYCK PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.177e-25
Identity = 52/83 (62.65%), Postives = 62/83 (74.70%), Query Frame = 2
Query:   86 QCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYL 334
            QCHTVE G  HK GPNL+G+FGR SG   GYSY+ AN    V W+E+T+ DYL NPKKYIPGTKM F GLKK +DR D++ Y+
Sbjct:   23 QCHTVEAGGPHKVGPNLHGVFGRHSGKASGYSYTDANIKKNVLWDEQTMSDYLENPKKYIPGTKMAFGGLKKEKDRNDIVTYM 105          

HSP 2 Score: 21.1718 bits (43), Expect = 2.177e-25
Identity = 7/14 (50.00%), Postives = 10/14 (71.43%), Query Frame = 1
Query:   40 GNAKAGEKIFKTKC 81
            G+ K G  +FKT+C
Sbjct:    8 GSEKKGATLFKTRC 21          
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC_CAEEL (Cytochrome c OS=Caenorhabditis elegans GN=cyc-2.1 PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 4.802e-25
Identity = 54/88 (61.36%), Postives = 66/88 (75.00%), Query Frame = 2
Query:   86 QCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 349
            QCH V+  A  K GP L+G+ GR SGT  G+ YSAANKN  V W ++TL++YLLNPKKYIPGTKMVF GLKK  +RADLI Y++  +A
Sbjct:   22 QCHVVDSTAT-KTGPTLHGVIGRTSGTVSGFDYSAANKNKGVVWTKETLFEYLLNPKKYIPGTKMVFAGLKKADERADLIKYIEVESA 108          

HSP 2 Score: 21.9422 bits (45), Expect = 4.802e-25
Identity = 6/18 (33.33%), Postives = 13/18 (72.22%), Query Frame = 1
Query:   28 EAPPGNAKAGEKIFKTKC 81
            + P G+ + G+K++K +C
Sbjct:    3 DIPAGDYEKGKKVYKQRC 20          
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYCA_TAKRU (Cytochrome c-a OS=Takifugu rubripes GN=cyc-a PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 7.254e-25
Identity = 51/88 (57.95%), Postives = 66/88 (75.00%), Query Frame = 2
Query:   86 QCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 349
            QCHTV K   HK GPNL GLFGR++G   GYSY+ AN    + W+E+TL  YL NPKKYIPGTKM F G++K ++R D+IAY+K++T+
Sbjct:   17 QCHTVTKEGRHKVGPNLWGLFGRKTGQAEGYSYTQANIEKGITWDEETLNVYLQNPKKYIPGTKMNFAGIRKKRERLDIIAYIKEATS 104          
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC2_ASCSU (Cytochrome c type-2 OS=Ascaris suum PE=2 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 8.137e-25
Identity = 47/83 (56.63%), Postives = 63/83 (75.90%), Query Frame = 2
Query:   89 CHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 337
            CH V+     K GP+LNG+FG  +GT  GY YS ANKN  + W ++T++DYL NPKKY+PG+KM+F GLKK +DRADLI+Y++
Sbjct:   23 CHVVDSDKA-KSGPSLNGIFGSSAGTVKGYDYSNANKNANIVWTKETMFDYLANPKKYMPGSKMIFAGLKKVEDRADLISYIE 104          

HSP 2 Score: 26.1794 bits (56), Expect = 8.137e-25
Identity = 9/18 (50.00%), Postives = 15/18 (83.33%), Query Frame = 1
Query:   28 EAPPGNAKAGEKIFKTKC 81
            E P G+ ++G++IFKT+C
Sbjct:    3 EIPEGDYESGKQIFKTRC 20          
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC1_DROME (Cytochrome c-1 OS=Drosophila melanogaster GN=Cyt-c-d PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 1.059e-24
Identity = 52/86 (60.47%), Postives = 61/86 (70.93%), Query Frame = 2
Query:   86 QCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQS 343
            QCHT E G  HK GPNL G+ GR+ GT  GY Y+ AN    V W E  L +YL +PKKYIPGTKMVF GLKK ++RADLIA+LK +
Sbjct:   19 QCHTYEVGGKHKVGPNLGGVVGRKCGTAAGYKYTDANIKKGVTWTEGNLDEYLKDPKKYIPGTKMVFAGLKKAEERADLIAFLKSN 104          

HSP 2 Score: 22.7126 bits (47), Expect = 1.059e-24
Identity = 9/15 (60.00%), Postives = 12/15 (80.00%), Query Frame = 1
Query:   40 GNAKAGEKIFKTKCA 84
            G+A+ G+KIF  KCA
Sbjct:    4 GDAENGKKIFVQKCA 18          
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC2_CAEEL (Probable cytochrome c OS=Caenorhabditis elegans GN=ZC116.2 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.295e-24
Identity = 52/88 (59.09%), Postives = 62/88 (70.45%), Query Frame = 2
Query:   86 QCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 349
            QCH V      K GP LNG+ GRQSG   G+ YSAANKN  V W+ +TL+DYL +PKKYIPGTKMVF GLKK  +RADLI +++   A
Sbjct:   32 QCHVVNS-LQTKTGPTLNGVIGRQSGQVAGFDYSAANKNKGVVWDRQTLFDYLADPKKYIPGTKMVFAGLKKADERADLIKFIEVEAA 118          

HSP 2 Score: 23.8682 bits (50), Expect = 2.295e-24
Identity = 10/22 (45.45%), Postives = 14/22 (63.64%), Query Frame = 1
Query:   16 ASFDEAPPGNAKAGEKIFKTKC 81
            AS    P G+ + G+KIFK +C
Sbjct:    9 ASGGAIPEGDNEKGKKIFKQRC 30          
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC_EUGGR (Cytochrome c OS=Euglena gracilis PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.600e-24
Identity = 49/84 (58.33%), Postives = 66/84 (78.57%), Query Frame = 2
Query:   86 QCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 337
            QCH+ +KG  +  GP+L G++GR SG+ PGY+YS ANKN A+ WEE+TL+ +L NPKKY+PGTKM F G+K  +DR D+IAY+K
Sbjct:   16 QCHSAQKGV-NSTGPSLWGVYGRTSGSVPGYAYSNANKNAAIVWEEETLHKFLENPKKYVPGTKMAFAGIKAKKDRQDIIAYMK 98          
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC_CAEBR (Cytochrome c OS=Caenorhabditis briggsae GN=cyc-2.1 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 8.727e-24
Identity = 54/92 (58.70%), Postives = 65/92 (70.65%), Query Frame = 2
Query:   86 QCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA*ELA 361
            QCH V+  A  K GP L G+ GR SGT  G+ YSAANK+  V W  +TL++YLLNPKKYIPGTKMVF GLKK  +RADLI Y++   +  LA
Sbjct:   22 QCHVVDSTAT-KTGPTLYGVIGRTSGTVAGFDYSAANKSKGVVWTRETLFEYLLNPKKYIPGTKMVFAGLKKADERADLIKYIEVECSKPLA 112          

HSP 2 Score: 21.9422 bits (45), Expect = 8.727e-24
Identity = 6/18 (33.33%), Postives = 13/18 (72.22%), Query Frame = 1
Query:   28 EAPPGNAKAGEKIFKTKC 81
            + P G+ + G+K++K +C
Sbjct:    3 DIPAGDYEKGKKVYKQRC 20          
The following BLAST results are available for this feature:
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
CYC_ASHGO1.285e-2562.65Cytochrome c OS=Ashbya gossypii GN=CYC1 PE=3 SV=2[more]
CYC_YARLI1.285e-2558.14Cytochrome c OS=Yarrowia lipolytica GN=CYC1 PE=3 S... [more]
CYC_KLULA2.177e-2562.65Cytochrome c OS=Kluyveromyces lactis GN=CYCK PE=3 ... [more]
CYC_CAEEL4.802e-2561.36Cytochrome c OS=Caenorhabditis elegans GN=cyc-2.1 ... [more]
CYCA_TAKRU7.254e-2557.95Cytochrome c-a OS=Takifugu rubripes GN=cyc-a PE=3 ... [more]
CYC2_ASCSU8.137e-2556.63Cytochrome c type-2 OS=Ascaris suum PE=2 SV=3[more]
CYC1_DROME1.059e-2460.47Cytochrome c-1 OS=Drosophila melanogaster GN=Cyt-c... [more]
CYC2_CAEEL2.295e-2459.09Probable cytochrome c OS=Caenorhabditis elegans GN... [more]
CYC_EUGGR3.600e-2458.33Cytochrome c OS=Euglena gracilis PE=1 SV=1[more]
CYC_CAEBR8.727e-2458.70Cytochrome c OS=Caenorhabditis briggsae GN=cyc-2.1... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00683 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00683 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623592 ID=BQ623592; Name=BQ623592; organism=Citrus sinensis; type=EST; length=588bp
AACACCACAATAATGGCGTCGTTTGATGAGGCACCTCCCGGCAATGCAAA
GGCCGGAGAGAAGATCTTCAAGACCAAGTGCGCCTCAGTGCCACACCGTC
GAGAAAGGCGCCGGTCACAAACAAGGTCCTAATTTGAACGGATTGTTTGG
AAGGCAATCGGGGACTACACCTGGGTACTCATACTCTGCGGCTAACAAGA
ACATGGCTGTGAATTGGGAGGAAAAGACTTTGTATGATTACTTGCTCAAC
CCTAAGAAGTACATTCCTGGAACAAAGATGGTATTCCCTGGATTGAAGAA
GCCTCAGGATCGTGCCGACCTTATTGCATATTTGAAACAATCTACTGCAT
AAGAACTTGCCGATAGTCAGTTTACCTATTCCATTTTGCAGTTGTTGAAG
ATTGTTTTGCGGTGCGGATATAGTACTGTTTTTTACCAATAAATTTTAAA
CATTTAAGGTTCAGCAATGTTCTTTGTAACTTGAGCATTGCTAATTTGAG
AAAAGGTTGCTGTCATTGGCAAACATAATATTCAATTGAATTTCCTGGTT
ATAATCATATTTCATGAATTTTGGGTGAAAAAAAAAAA
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