BQ623592

Overview
NameBQ623592
Unique NameBQ623592
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length588
Libraries
Library NameType
Ridge pineapple sweet orange entire seedlingcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC_CRIFA (Cytochrome c OS=Crithidia fasciculata PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 1.478e-23
Identity = 49/84 (58.33%), Postives = 58/84 (69.05%), Query Frame = 2
Query:   86 QCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 337
            QCHT  +G  +  GPNL GL GR SGT  GY+YS AN    V W    L  YL NPKK++PGTKM F G+KKPQ+RAD+IAYL+
Sbjct:   27 QCHTANQGGANGVGPNLYGLVGRHSGTIEGYAYSKANAESGVVWTPDVLDVYLENPKKFMPGTKMSFAGMKKPQERADVIAYLE 110          

HSP 2 Score: 26.1794 bits (56), Expect = 1.478e-23
Identity = 10/17 (58.82%), Postives = 13/17 (76.47%), Query Frame = 1
Query:   34 PPGNAKAGEKIFKTKCA 84
            PPG+A  GEK+FK + A
Sbjct:   10 PPGDAARGEKLFKGRAA 26          
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC_CRION (Cytochrome c OS=Crithidia oncopelti PE=1 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 4.242e-23
Identity = 48/84 (57.14%), Postives = 59/84 (70.24%), Query Frame = 2
Query:   86 QCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 337
            QCHT  KG  +  GPNL G+  R SGT  G++YS AN +  V W  + L  YL NPKK++PGTKM F G+KKPQ+RADLIAYL+
Sbjct:   27 QCHTGAKGGANGVGPNLFGIVNRHSGTVEGFAYSKANADSGVVWTPEVLDVYLENPKKFMPGTKMSFAGIKKPQERADLIAYLE 110          

HSP 2 Score: 26.9498 bits (58), Expect = 4.242e-23
Identity = 11/17 (64.71%), Postives = 13/17 (76.47%), Query Frame = 1
Query:   34 PPGNAKAGEKIFKTKCA 84
            PPG+A  GEKIFK + A
Sbjct:   10 PPGDAAKGEKIFKGRAA 26          
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC_EUGVI (Cytochrome c OS=Euglena viridis PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 5.199e-23
Identity = 48/84 (57.14%), Postives = 64/84 (76.19%), Query Frame = 2
Query:   86 QCHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 337
            QCH+ +KG  +  GP L G++GR SGT PGY+YS ANKN A+ WE+++L  +L NPKKY+PGTKM F G+K  +DR D+IAY+K
Sbjct:   16 QCHSSQKGV-NSTGPALYGVYGRTSGTVPGYAYSNANKNAAIVWEDESLNKFLENPKKYVPGTKMAFAGIKAKKDRLDIIAYMK 98          
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC2_RHOVI (Cytochrome c2 OS=Rhodopseudomonas viridis GN=cycA PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 9.804e-22
Identity = 47/87 (54.02%), Postives = 61/87 (70.11%), Query Frame = 2
Query:   89 CHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQSTA 349
            CH++  GA +K GP LNGLFGR SGT  G++YS ANKN  + W E+   +Y+ +PK  IPGTKM+F G+K  Q  +DLIAY+KQ  A
Sbjct:   36 CHSIGPGAKNKVGPVLNGLFGRHSGTIEGFAYSDANKNSGITWTEEVFREYIRDPKAKIPGTKMIFAGVKDEQKVSDLIAYIKQFNA 122          
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC2_RHOVA (Cytochrome c2 OS=Rhodomicrobium vannielii PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.184e-21
Identity = 48/84 (57.14%), Postives = 59/84 (70.24%), Query Frame = 2
Query:   89 CHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQ 340
            CH V   A +  GP  N +FG+++G  PG++YS A KN  + W+E TL  YL NPK  +PGTKMVF GLK PQDRAD+IAYLKQ
Sbjct:   17 CHQVGPTAKNGVGPEQNDVFGQKAGARPGFNYSDAMKNSGLTWDEATLDKYLENPKAVVPGTKMVFVGLKNPQDRADVIAYLKQ 100          
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC21_RHOCR (Cytochrome c2 OS=Rhodoplanes cryptolactis PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 9.177e-20
Identity = 44/84 (52.38%), Postives = 59/84 (70.24%), Query Frame = 2
Query:   89 CHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQ 340
            CH V +GA +K GP LNGL GR+SGT  G++YS ANKN  + W++ T   Y+ +P+  IPGTKMVF G+K  +++ DL AYL Q
Sbjct:   16 CHAVGEGAANKVGPVLNGLPGRKSGTIAGFNYSDANKNSGITWDKATFKTYITDPRAKIPGTKMVFAGIKNDKEQDDLWAYLSQ 99          
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC_TRYBB (Cytochrome c (Fragments) OS=Trypanosoma brucei brucei PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.199e-19
Identity = 45/78 (57.69%), Postives = 58/78 (74.36%), Query Frame = 2
Query:  104 KGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 337
            +G  +  GPNL G+ GR+SGT  G++YS AN++  V W  + L  YL NPKK++PGTKM F GLKKPQ+RADLIAYL+
Sbjct:   12 QGGSNGVGPNLYGIVGRKSGTVEGFTYSKANQDSGVMWTPQVLDVYLENPKKFMPGTKMSFAGLKKPQERADLIAYLE 89          
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CY550_BRAJA (Cytochrome c-550 OS=Bradyrhizobium japonicum GN=cycA PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.948e-19
Identity = 42/84 (50.00%), Postives = 56/84 (66.67%), Query Frame = 2
Query:   89 CHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQ 340
            CH + +GA +K GP LNGL GR+SGT P YSYS ANKN  + W+E T  +Y+ +PK  IPGTKM F G+K   +  +L  ++ Q
Sbjct:   44 CHAIGEGAKNKVGPELNGLNGRKSGTAPDYSYSDANKNSGITWDEATFKEYIKDPKAKIPGTKMAFAGIKNETEINNLWTFVSQ 127          
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC2_RHOMA (Cytochrome c2 OS=Rhodopseudomonas marina PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.260e-18
Identity = 42/86 (48.84%), Postives = 60/86 (69.77%), Query Frame = 2
Query:   89 CHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVN---WEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLK 337
            CH+V +GA ++ GP  N LFGR +G+ P + YS A K+   N   W +K+L++YL NP+ Y+P TKM+F GLKKP+D   ++AYLK
Sbjct:   19 CHSVGEGAKNRVGPEQNNLFGRVAGSLPDFRYSKAMKSAGENGLVWTDKSLHEYLKNPRAYVPKTKMIFAGLKKPEDIDAVVAYLK 104          
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Match: CYC22_RHOCR (Cytochrome c2 OS=Rhodoplanes cryptolactis PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 3.855e-18
Identity = 40/84 (47.62%), Postives = 58/84 (69.05%), Query Frame = 2
Query:   89 CHTVEKGAGHKQGPNLNGLFGRQSGTTPGYSYSAANKNMAVNWEEKTLYDYLLNPKKYIPGTKMVFPGLKKPQDRADLIAYLKQ 340
            CH + +GA +K GP L+GL GR SG+ PG++YS ANK   + W++ T   Y+ +P+  IPGTKMVF G+K  +++ DL A+L Q
Sbjct:   16 CHNIGEGATNKVGPVLDGLEGRHSGSIPGFNYSEANKKSGLTWDKATFKSYIADPRAKIPGTKMVFAGIKNEKEQEDLWAFLTQ 99          
The following BLAST results are available for this feature:
BLAST of BQ623592 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 171
Match NameE-valueIdentityDescription
CYC_CRIFA1.478e-2358.33Cytochrome c OS=Crithidia fasciculata PE=1 SV=2[more]
CYC_CRION4.242e-2357.14Cytochrome c OS=Crithidia oncopelti PE=1 SV=2[more]
CYC_EUGVI5.199e-2357.14Cytochrome c OS=Euglena viridis PE=1 SV=1[more]
CYC2_RHOVI9.804e-2254.02Cytochrome c2 OS=Rhodopseudomonas viridis GN=cycA ... [more]
CYC2_RHOVA2.184e-2157.14Cytochrome c2 OS=Rhodomicrobium vannielii PE=1 SV=... [more]
CYC21_RHOCR9.177e-2052.38Cytochrome c2 OS=Rhodoplanes cryptolactis PE=1 SV=... [more]
CYC_TRYBB1.199e-1957.69Cytochrome c (Fragments) OS=Trypanosoma brucei bru... [more]
CY550_BRAJA5.948e-1950.00Cytochrome c-550 OS=Bradyrhizobium japonicum GN=cy... [more]
CYC2_RHOMA2.260e-1848.84Cytochrome c2 OS=Rhodopseudomonas marina PE=1 SV=1[more]
CYC22_RHOCR3.855e-1847.62Cytochrome c2 OS=Rhodoplanes cryptolactis PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_00683 Ridge pineapple sweet orange entire seedling Citrus sinensis cDNA clone USDA-FP_00683 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>BQ623592 ID=BQ623592; Name=BQ623592; organism=Citrus sinensis; type=EST; length=588bp
AACACCACAATAATGGCGTCGTTTGATGAGGCACCTCCCGGCAATGCAAA
GGCCGGAGAGAAGATCTTCAAGACCAAGTGCGCCTCAGTGCCACACCGTC
GAGAAAGGCGCCGGTCACAAACAAGGTCCTAATTTGAACGGATTGTTTGG
AAGGCAATCGGGGACTACACCTGGGTACTCATACTCTGCGGCTAACAAGA
ACATGGCTGTGAATTGGGAGGAAAAGACTTTGTATGATTACTTGCTCAAC
CCTAAGAAGTACATTCCTGGAACAAAGATGGTATTCCCTGGATTGAAGAA
GCCTCAGGATCGTGCCGACCTTATTGCATATTTGAAACAATCTACTGCAT
AAGAACTTGCCGATAGTCAGTTTACCTATTCCATTTTGCAGTTGTTGAAG
ATTGTTTTGCGGTGCGGATATAGTACTGTTTTTTACCAATAAATTTTAAA
CATTTAAGGTTCAGCAATGTTCTTTGTAACTTGAGCATTGCTAATTTGAG
AAAAGGTTGCTGTCATTGGCAAACATAATATTCAATTGAATTTCCTGGTT
ATAATCATATTTCATGAATTTTGGGTGAAAAAAAAAAA
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